Wall clock time and date at job start Sat Mar 6 2021 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86299 * 109.47206 * 2 1 4 4 C 1.86301 * 109.47343 * 239.99833 * 2 1 3 5 5 C 1.86300 * 109.46927 * 119.99629 * 2 1 3 6 6 O 1.45198 * 109.47507 * 300.00248 * 5 2 1 7 7 C 1.34886 * 117.00108 * 74.99671 * 6 5 2 8 8 O 1.21621 * 120.00017 * 0.02562 * 7 6 5 9 9 C 1.46492 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.37997 * 126.26755 * 179.71570 * 9 7 6 11 11 C 1.39792 * 106.96907 * 179.85078 * 10 9 7 12 12 C 1.50707 * 126.07711 * 180.15953 * 11 10 9 13 13 O 1.42898 * 109.47089 * 65.27953 * 12 11 10 14 14 Si 1.86293 * 109.46949 * 185.28117 * 12 11 10 15 15 H 1.48498 * 109.47692 * 59.99838 * 14 12 11 16 16 H 1.48507 * 109.47315 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47296 * 299.99673 * 14 12 11 18 18 C 1.35483 * 107.84561 * 0.41513 * 11 10 9 19 19 N 1.34962 * 108.98234 * 359.74362 * 18 11 10 20 20 H 1.09000 * 109.47314 * 300.00273 * 1 2 3 21 21 H 1.09002 * 109.47039 * 60.00283 * 1 2 3 22 22 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47367 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46890 * 299.99808 * 3 2 1 25 25 H 1.09000 * 109.47207 * 59.99662 * 3 2 1 26 26 H 1.09001 * 109.46900 * 300.00103 * 4 2 1 27 27 H 1.09002 * 109.47148 * 59.99951 * 4 2 1 28 28 H 1.08996 * 109.46889 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47076 * 60.00598 * 5 2 1 30 30 H 1.09004 * 109.47065 * 180.02562 * 5 2 1 31 31 H 1.07998 * 126.51042 * 359.97102 * 10 9 7 32 32 H 1.09003 * 109.46649 * 305.27904 * 12 11 10 33 33 H 0.96701 * 114.00133 * 60.00213 * 13 12 11 34 34 H 1.08002 * 125.51171 * 179.75858 * 18 11 10 35 35 H 0.97005 * 125.63324 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8781 1.5212 6 8 1.9999 -0.1937 2.7067 7 6 0.7012 -0.3678 3.0271 8 8 -0.0068 -1.0733 2.3341 9 6 0.1436 0.2927 4.2098 10 6 -1.1609 0.2096 4.6522 11 6 -1.2497 0.9890 5.8093 12 6 -2.4855 1.1973 6.6464 13 8 -2.8726 -0.0431 7.2410 14 14 -2.1263 2.4423 7.9848 15 1 -1.7240 3.7313 7.3670 16 1 -3.3438 2.6470 8.8102 17 1 -1.0246 1.9405 8.8449 18 6 -0.0288 1.5286 6.0411 19 7 0.8237 1.1149 5.0801 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.5739 1.7565 0.0005 24 1 2.1207 2.2702 -0.8900 25 1 2.1206 2.2703 0.8899 26 1 2.1207 -1.9059 -1.5211 27 1 2.1207 -0.3645 -2.4111 28 1 3.5740 -0.8786 -1.5208 29 1 2.1206 -1.9058 1.5212 30 1 3.5739 -0.8778 1.5215 31 1 -1.9606 -0.3525 4.1930 32 1 -3.2941 1.5656 6.0150 33 1 -2.1994 -0.4300 7.8174 34 1 0.2219 2.1836 6.8624 35 1 1.7608 1.3566 5.0136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_10542844_4858416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:42:21 Heat of formation + Delta-G solvation = -107.299283 kcal Electronic energy + Delta-G solvation = -17356.149697 eV Core-core repulsion = 14479.018264 eV Total energy + Delta-G solvation = -2877.131434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.58095 -40.91111 -37.66690 -37.30066 -32.68635 -31.11925 -29.71407 -28.52754 -28.36079 -28.20388 -26.41585 -24.22594 -21.33803 -20.96953 -19.92078 -18.01371 -17.64983 -17.43156 -16.83099 -16.14627 -15.71153 -15.07980 -14.91283 -14.67016 -14.39462 -14.14881 -14.07769 -13.99524 -13.82594 -13.58403 -13.43200 -13.28162 -13.07416 -13.01500 -12.52328 -12.40702 -12.15415 -11.82221 -11.59394 -10.94971 -10.78705 -10.44650 -10.37821 -10.01849 -9.43217 0.20322 1.17639 1.36622 1.42596 1.43518 1.48166 1.53739 1.80127 1.89415 1.95033 2.09117 2.16362 2.50556 3.59353 3.78990 3.87551 3.98576 4.15094 4.31439 4.59131 4.63553 4.65759 4.68310 4.69858 4.72021 4.83150 4.90212 4.95938 4.98049 5.30607 5.39489 5.46428 5.53951 5.72082 5.75750 6.21961 6.66805 6.79057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.437 4.437 2 Si 1.000 3.000 3 C -0.446 4.446 4 C -0.446 4.446 5 C -0.236 4.236 6 O -0.344 6.344 7 C 0.520 3.480 8 O -0.480 6.480 9 C -0.045 4.045 10 C -0.064 4.064 11 C -0.215 4.215 12 C -0.045 4.045 13 O -0.540 6.540 14 Si 0.946 3.054 15 H -0.251 1.251 16 H -0.251 1.251 17 H -0.253 1.253 18 C 0.037 3.963 19 N -0.520 5.520 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.375 0.625 34 H 0.173 0.827 35 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 2.413 1.126 4.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.545 4.545 2 Si 1.195 2.805 3 C -0.554 4.554 4 C -0.555 4.555 5 C -0.355 4.355 6 O -0.261 6.261 7 C 0.365 3.635 8 O -0.367 6.367 9 C -0.155 4.155 10 C -0.089 4.089 11 C -0.222 4.222 12 C -0.157 4.157 13 O -0.345 6.345 14 Si 0.768 3.232 15 H -0.174 1.174 16 H -0.175 1.175 17 H -0.177 1.177 18 C -0.102 4.102 19 N -0.115 5.115 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.174 0.826 32 H 0.134 0.866 33 H 0.222 0.778 34 H 0.190 0.810 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.047 2.892 1.175 4.363 hybrid contribution 1.049 -0.432 -0.121 1.140 sum 4.096 2.461 1.054 4.893 Atomic orbital electron populations 1.26245 1.19233 1.05289 1.03759 0.79699 0.68484 0.67307 0.64975 1.26067 1.06196 1.18515 1.04605 1.26041 1.06250 1.08286 1.14890 1.28371 1.04461 1.04122 0.98506 1.86462 1.26803 1.67041 1.45763 1.19794 0.80706 0.79506 0.83516 1.90924 1.60048 1.36284 1.49468 1.19396 0.93398 1.06595 0.96121 1.21257 0.93723 0.99023 0.94933 1.19890 0.95500 1.06078 1.00711 1.24295 0.96293 0.93904 1.01210 1.86520 1.44825 1.37262 1.65893 0.85797 0.81138 0.78085 0.78163 1.17445 1.17480 1.17662 1.21857 0.90216 1.02832 0.95253 1.41826 1.12359 1.36574 1.20754 0.91453 0.91851 0.90325 0.91119 0.90890 0.91251 0.90893 0.90597 0.91076 0.89929 0.87227 0.82641 0.86636 0.77837 0.80955 0.73430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.56 7.10 101.05 0.72 0.16 16 2 Si 1.00 -1.41 12.12 -169.99 -2.06 -3.47 16 3 C -0.45 0.44 8.65 101.05 0.87 1.31 16 4 C -0.45 0.61 8.65 101.05 0.87 1.48 16 5 C -0.24 0.10 5.40 101.05 0.55 0.65 16 6 O -0.34 -0.39 9.93 -41.00 -0.41 -0.80 16 7 C 0.52 1.34 6.70 34.06 0.23 1.57 16 8 O -0.48 -2.13 12.60 -19.36 -0.24 -2.38 16 9 C -0.04 -0.07 7.10 -82.00 -0.58 -0.65 16 10 C -0.06 -0.11 10.60 -39.09 -0.41 -0.52 16 11 C -0.21 -0.01 5.43 -105.02 -0.57 -0.58 16 12 C -0.05 0.03 3.02 36.01 0.11 0.14 16 13 O -0.54 -0.25 12.88 -35.23 -0.45 -0.71 16 14 Si 0.95 -1.52 25.88 -169.99 -4.40 -5.92 16 15 H -0.25 0.31 7.11 56.52 0.40 0.71 16 16 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 17 H -0.25 0.46 7.11 56.52 0.40 0.86 16 18 C 0.04 -0.05 10.43 -17.16 -0.18 -0.23 16 19 N -0.52 0.58 6.07 -9.53 -0.06 0.52 16 20 H 0.07 0.17 6.28 -51.93 -0.33 -0.15 16 21 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 22 H 0.08 0.19 7.42 -51.93 -0.39 -0.20 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.08 0.01 7.52 -51.93 -0.39 -0.38 16 30 H 0.11 -0.27 7.96 -51.93 -0.41 -0.68 16 31 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 32 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.37 -1.05 8.70 45.56 0.40 -0.65 16 34 H 0.17 -0.71 6.20 -52.49 -0.33 -1.04 16 35 H 0.43 -1.52 8.96 -40.82 -0.37 -1.89 16 LS Contribution 298.69 15.07 4.50 4.50 Total: 0.00 -6.21 298.69 -5.86 -12.07 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -4.34 Total: -7.14 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 1.60 Total: 3.32 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.06 Total: 0.52 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: -1.10 Total: -3.88 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: -6.46 Total: -9.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -6.21 -5.86 -12.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_4858416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.230 kcal (2) G-P(sol) polarization free energy of solvation -6.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds