Wall clock time and date at job start Sat Mar 6 2021 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86299 * 109.47206 * 2 1 4 4 C 1.86301 * 109.47343 * 239.99833 * 2 1 3 5 5 C 1.86300 * 109.46927 * 119.99629 * 2 1 3 6 6 O 1.45198 * 109.47507 * 300.00248 * 5 2 1 7 7 C 1.34886 * 117.00108 * 74.99671 * 6 5 2 8 8 O 1.21621 * 120.00017 * 0.02562 * 7 6 5 9 9 C 1.46492 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.37997 * 126.26755 * 179.71570 * 9 7 6 11 11 C 1.39792 * 106.96907 * 179.85078 * 10 9 7 12 12 C 1.50707 * 126.07711 * 180.15953 * 11 10 9 13 13 O 1.42898 * 109.47089 * 65.27953 * 12 11 10 14 14 Si 1.86293 * 109.46949 * 185.28117 * 12 11 10 15 15 H 1.48498 * 109.47692 * 59.99838 * 14 12 11 16 16 H 1.48507 * 109.47315 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47296 * 299.99673 * 14 12 11 18 18 C 1.35483 * 107.84561 * 0.41513 * 11 10 9 19 19 N 1.34962 * 108.98234 * 359.74362 * 18 11 10 20 20 H 1.09000 * 109.47314 * 300.00273 * 1 2 3 21 21 H 1.09002 * 109.47039 * 60.00283 * 1 2 3 22 22 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47367 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46890 * 299.99808 * 3 2 1 25 25 H 1.09000 * 109.47207 * 59.99662 * 3 2 1 26 26 H 1.09001 * 109.46900 * 300.00103 * 4 2 1 27 27 H 1.09002 * 109.47148 * 59.99951 * 4 2 1 28 28 H 1.08996 * 109.46889 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47076 * 60.00598 * 5 2 1 30 30 H 1.09004 * 109.47065 * 180.02562 * 5 2 1 31 31 H 1.07998 * 126.51042 * 359.97102 * 10 9 7 32 32 H 1.09003 * 109.46649 * 305.27904 * 12 11 10 33 33 H 0.96701 * 114.00133 * 60.00213 * 13 12 11 34 34 H 1.08002 * 125.51171 * 179.75858 * 18 11 10 35 35 H 0.97005 * 125.63324 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8781 1.5212 6 8 1.9999 -0.1937 2.7067 7 6 0.7012 -0.3678 3.0271 8 8 -0.0068 -1.0733 2.3341 9 6 0.1436 0.2927 4.2098 10 6 -1.1609 0.2096 4.6522 11 6 -1.2497 0.9890 5.8093 12 6 -2.4855 1.1973 6.6464 13 8 -2.8726 -0.0431 7.2410 14 14 -2.1263 2.4423 7.9848 15 1 -1.7240 3.7313 7.3670 16 1 -3.3438 2.6470 8.8102 17 1 -1.0246 1.9405 8.8449 18 6 -0.0288 1.5286 6.0411 19 7 0.8237 1.1149 5.0801 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.5739 1.7565 0.0005 24 1 2.1207 2.2702 -0.8900 25 1 2.1206 2.2703 0.8899 26 1 2.1207 -1.9059 -1.5211 27 1 2.1207 -0.3645 -2.4111 28 1 3.5740 -0.8786 -1.5208 29 1 2.1206 -1.9058 1.5212 30 1 3.5739 -0.8778 1.5215 31 1 -1.9606 -0.3525 4.1930 32 1 -3.2941 1.5656 6.0150 33 1 -2.1994 -0.4300 7.8174 34 1 0.2219 2.1836 6.8624 35 1 1.7608 1.3566 5.0136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10542844_4858416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:42:21 Heat of formation + Delta-G solvation = -102.982058 kcal Electronic energy + Delta-G solvation = -17355.962488 eV Core-core repulsion = 14479.018264 eV Total energy + Delta-G solvation = -2876.944225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.59211 -41.02038 -37.64304 -37.44745 -32.67487 -31.15948 -29.66737 -28.45797 -28.39110 -28.17829 -26.37002 -24.27264 -21.40015 -20.96069 -19.93407 -18.12830 -17.63749 -17.54006 -16.80259 -16.11075 -15.66148 -15.05492 -14.87484 -14.67945 -14.42036 -14.16465 -14.03796 -13.94688 -13.81402 -13.58075 -13.40396 -13.26537 -13.09193 -13.00669 -12.58533 -12.34132 -12.05509 -11.83566 -11.66734 -10.88230 -10.79895 -10.44780 -10.32857 -10.02542 -9.43713 0.11990 1.27742 1.41113 1.44003 1.53052 1.57571 1.64498 1.85562 1.95612 2.04044 2.05591 2.17736 2.54137 3.70980 3.83731 3.93028 4.05230 4.21324 4.32720 4.66181 4.72258 4.73568 4.75655 4.78398 4.79490 4.80331 4.83396 4.85247 4.95639 5.20900 5.49463 5.51715 5.58328 5.61979 5.68164 6.36900 6.65934 6.85355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.060 2.940 3 C -0.452 4.452 4 C -0.451 4.451 5 C -0.254 4.254 6 O -0.341 6.341 7 C 0.518 3.482 8 O -0.510 6.510 9 C -0.065 4.065 10 C -0.083 4.083 11 C -0.227 4.227 12 C -0.055 4.055 13 O -0.561 6.561 14 Si 0.992 3.008 15 H -0.250 1.250 16 H -0.281 1.281 17 H -0.241 1.241 18 C 0.055 3.945 19 N -0.509 5.509 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.387 0.613 34 H 0.207 0.793 35 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 3.377 1.714 6.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.252 2.748 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.372 4.372 6 O -0.257 6.257 7 C 0.364 3.636 8 O -0.399 6.399 9 C -0.175 4.175 10 C -0.109 4.109 11 C -0.233 4.233 12 C -0.165 4.165 13 O -0.368 6.368 14 Si 0.814 3.186 15 H -0.174 1.174 16 H -0.207 1.207 17 H -0.164 1.164 18 C -0.084 4.084 19 N -0.105 5.105 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.129 0.871 33 H 0.236 0.764 34 H 0.223 0.777 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.844 3.846 1.763 6.431 hybrid contribution 0.432 -0.745 -0.297 0.911 sum 5.275 3.101 1.466 6.292 Atomic orbital electron populations 1.26582 1.22999 1.03859 1.02932 0.78790 0.64952 0.66813 0.64252 1.26124 1.07014 1.18414 1.04438 1.26077 1.07113 1.08086 1.14714 1.28708 1.06100 1.03819 0.98536 1.86452 1.25926 1.67009 1.46332 1.20015 0.80936 0.79095 0.83540 1.90907 1.60739 1.37739 1.50533 1.19301 0.93672 1.07878 0.96676 1.21319 0.93799 0.99768 0.96011 1.20024 0.96589 1.06319 1.00359 1.24537 0.95990 0.94026 1.01921 1.86480 1.45937 1.38029 1.66388 0.85148 0.79919 0.77014 0.76525 1.17382 1.20684 1.16352 1.22331 0.89302 1.01685 0.95128 1.41829 1.13000 1.35586 1.20038 0.93206 0.91646 0.92064 0.89949 0.90732 0.91801 0.91170 0.90446 0.89839 0.90723 0.84680 0.84183 0.87102 0.76382 0.77675 0.71908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -2.20 7.10 113.37 0.80 -1.39 16 2 Si 1.06 -2.75 12.12 68.60 0.83 -1.92 16 3 C -0.45 1.19 8.65 113.37 0.98 2.18 16 4 C -0.45 1.49 8.65 113.37 0.98 2.47 16 5 C -0.25 0.20 5.40 113.37 0.61 0.81 16 6 O -0.34 -0.94 9.93 -58.00 -0.58 -1.51 16 7 C 0.52 3.54 6.70 69.97 0.47 4.01 16 8 O -0.51 -5.93 12.60 19.44 0.24 -5.68 16 9 C -0.06 -0.28 7.10 40.32 0.29 0.01 16 10 C -0.08 -0.44 10.60 22.59 0.24 -0.21 16 11 C -0.23 -0.10 5.43 -20.12 -0.11 -0.21 16 12 C -0.05 0.05 3.02 71.24 0.22 0.26 16 13 O -0.56 -1.02 12.88 -148.98 -1.92 -2.94 16 14 Si 0.99 -4.09 25.88 68.60 1.78 -2.31 16 15 H -0.25 1.05 7.11 99.48 0.71 1.76 16 16 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 17 H -0.24 1.47 7.11 99.48 0.71 2.18 16 18 C 0.06 -0.23 10.43 83.57 0.87 0.64 16 19 N -0.51 1.40 6.07 -184.05 -1.12 0.28 16 20 H 0.05 0.40 6.28 -2.39 -0.01 0.39 16 21 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 22 H 0.06 0.48 7.42 -2.39 -0.02 0.46 16 23 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 24 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 25 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 26 H 0.07 -0.17 7.96 -2.39 -0.02 -0.18 16 27 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.07 0.09 7.52 -2.39 -0.02 0.07 16 30 H 0.14 -0.84 7.96 -2.38 -0.02 -0.86 16 31 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 33 H 0.39 -2.01 8.70 -74.06 -0.64 -2.65 16 34 H 0.21 -2.30 6.20 -2.91 -0.02 -2.32 16 35 H 0.44 -3.64 8.96 -92.70 -0.83 -4.47 16 Total: 0.00 -16.00 298.69 4.97 -11.03 By element: Atomic # 1 Polarization: -5.90 SS G_CDS: 0.38 Total: -5.52 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.35 Total: 8.58 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -1.12 Total: 0.28 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -2.25 Total: -10.14 kcal Atomic # 14 Polarization: -6.84 SS G_CDS: 2.61 Total: -4.23 kcal Total: -16.00 4.97 -11.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_4858416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.951 kcal (2) G-P(sol) polarization free energy of solvation -16.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds