Wall clock time and date at job start Sat Mar 6 2021 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 O 1.45202 * 109.47391 * 270.28656 * 9 8 7 11 11 C 1.34888 * 116.99958 * 180.02562 * 10 9 8 12 12 O 1.21626 * 120.00476 * 359.97438 * 11 10 9 13 13 C 1.46498 * 119.99847 * 179.97438 * 11 10 9 14 14 C 1.37987 * 126.26218 * 179.71148 * 13 11 10 15 15 C 1.39804 * 106.96975 * 179.84347 * 14 13 11 16 16 C 1.50695 * 126.08197 * 180.15385 * 15 14 13 17 17 O 1.42900 * 109.47001 * 65.28627 * 16 15 14 18 18 Si 1.86295 * 109.47197 * 185.28273 * 16 15 14 19 19 H 1.48503 * 109.47324 * 60.00376 * 18 16 15 20 20 H 1.48503 * 109.47246 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47374 * 300.00499 * 18 16 15 22 22 C 1.35490 * 107.83936 * 0.41713 * 15 14 13 23 23 N 1.34961 * 108.98426 * 359.74020 * 22 15 14 24 24 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 38 38 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 39 39 H 1.08004 * 126.51753 * 359.96325 * 14 13 11 40 40 H 1.09000 * 109.47437 * 305.28847 * 16 15 14 41 41 H 0.96702 * 114.00447 * 59.99504 * 17 16 15 42 42 H 1.07991 * 125.50704 * 179.75855 * 22 15 14 43 43 H 0.96998 * 125.63249 * 180.02562 * 23 22 15 44 44 H 1.08001 * 120.00310 * 179.72161 * 24 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 8 2.7776 -3.3509 5.8032 11 6 3.0558 -4.0104 6.9465 12 8 4.2118 -4.1989 7.2740 13 6 1.9654 -4.4996 7.7938 14 6 2.1010 -5.1906 8.9805 15 6 0.8104 -5.4543 9.4488 16 6 0.4594 -6.1865 10.7183 17 8 0.9020 -5.4263 11.8445 18 14 -1.3869 -6.4172 10.8118 19 1 -1.8470 -7.2072 9.6415 20 1 -1.7329 -7.1382 12.0632 21 1 -2.0526 -5.0899 10.8056 22 6 -0.0686 -4.9397 8.5554 23 7 0.6177 -4.3591 7.5488 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5134 -3.7509 4.7175 38 1 4.5127 -2.2094 5.6076 39 1 3.0279 -5.4723 9.4578 40 1 0.9480 -7.1608 10.7229 41 1 0.5071 -4.5456 11.9044 42 1 -1.1445 -4.9864 8.6359 43 1 0.2262 -3.9157 6.7800 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_10542844_9435856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:40:38 Heat of formation + Delta-G solvation = -95.697468 kcal Electronic energy + Delta-G solvation = -24901.785502 eV Core-core repulsion = 21201.177361 eV Total energy + Delta-G solvation = -3700.608141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.59226 -41.08482 -39.95220 -37.67177 -37.41006 -33.20844 -32.60363 -31.97134 -30.97956 -29.64633 -28.50696 -28.47879 -27.70613 -26.44055 -24.46568 -23.56528 -22.14718 -21.39552 -21.00614 -19.94396 -18.25562 -17.79983 -17.52906 -17.41034 -16.65263 -16.25836 -16.00087 -15.91086 -15.57763 -14.98162 -14.87097 -14.57720 -14.45260 -14.30226 -14.21322 -14.13405 -13.96986 -13.95419 -13.78798 -13.60727 -13.54122 -13.32289 -13.27195 -13.16599 -12.76842 -12.41061 -12.15860 -12.13564 -11.84952 -11.68511 -11.67923 -11.10740 -10.97102 -10.91496 -10.38529 -10.03100 -9.86952 -9.77680 -9.46325 0.04439 0.17279 0.45808 1.17541 1.36838 1.43807 1.51748 1.57242 1.63668 1.78084 1.90220 1.94143 2.04932 2.09513 2.47277 2.88537 3.56979 3.59700 3.75465 3.78913 3.85914 3.96679 4.04391 4.17883 4.24447 4.38273 4.42535 4.60040 4.63902 4.65229 4.69163 4.69462 4.70077 4.70158 4.70396 4.82335 4.91263 4.96390 5.06832 5.24307 5.35076 5.39905 5.43529 5.47398 5.52639 5.53707 5.54353 5.70763 6.02166 6.20640 6.66566 6.72345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.092 4.092 9 C 0.112 3.888 10 O -0.358 6.358 11 C 0.537 3.463 12 O -0.495 6.495 13 C -0.046 4.046 14 C -0.061 4.061 15 C -0.215 4.215 16 C -0.045 4.045 17 O -0.540 6.540 18 Si 0.946 3.054 19 H -0.251 1.251 20 H -0.251 1.251 21 H -0.253 1.253 22 C 0.039 3.961 23 N -0.519 5.519 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.375 0.625 42 H 0.174 0.826 43 H 0.427 0.573 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 1.880 -3.304 5.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.092 4.092 9 C 0.039 3.961 10 O -0.275 6.275 11 C 0.381 3.619 12 O -0.382 6.382 13 C -0.156 4.156 14 C -0.087 4.087 15 C -0.222 4.222 16 C -0.157 4.157 17 O -0.345 6.345 18 Si 0.768 3.232 19 H -0.174 1.174 20 H -0.175 1.175 21 H -0.176 1.176 22 C -0.100 4.100 23 N -0.114 5.114 24 C -0.124 4.124 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.174 0.826 40 H 0.134 0.866 41 H 0.222 0.778 42 H 0.191 0.809 43 H 0.266 0.734 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.351 1.246 -3.188 5.536 hybrid contribution 0.183 0.671 -0.443 0.825 sum -4.168 1.918 -3.631 5.850 Atomic orbital electron populations 1.26122 1.20428 1.04580 1.04531 0.78179 0.66867 0.66124 0.63625 1.26139 1.06502 1.18524 1.04608 1.26139 1.06504 1.08052 1.15083 1.27509 1.02820 0.99533 1.10275 1.21093 0.97456 0.94677 0.97724 1.21171 0.98609 0.99701 0.92906 1.19486 1.02066 0.93958 0.93670 1.21880 0.86121 0.98946 0.89175 1.86609 1.39732 1.67615 1.33578 1.19769 0.87637 0.75315 0.79132 1.90944 1.20598 1.54760 1.71906 1.19359 0.81819 1.14277 1.00188 1.21268 0.98414 0.96939 0.92111 1.19898 0.93101 1.09131 1.00070 1.24295 1.11588 0.96884 0.82927 1.86521 1.71563 1.31625 1.44781 0.85796 0.74300 0.81399 0.81684 1.17450 1.17457 1.17643 1.21868 0.98035 1.00173 0.89897 1.41822 1.05503 1.43450 1.20593 1.21173 0.98601 0.93828 0.98790 1.21092 0.97436 0.99811 0.92609 0.91176 0.90973 0.91178 0.91021 0.90892 0.91168 0.91168 0.90891 0.91019 0.85810 0.86062 0.89927 0.89924 0.82614 0.86620 0.77827 0.80916 0.73396 0.86060 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.90 8.65 101.05 0.87 1.78 16 2 Si 1.06 -3.20 12.32 -169.99 -2.09 -5.29 16 3 C -0.45 1.00 8.53 101.05 0.86 1.86 16 4 C -0.45 1.00 8.53 101.05 0.86 1.86 16 5 C -0.36 0.25 4.59 -39.58 -0.18 0.07 16 6 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 7 C -0.11 -0.07 9.70 -39.58 -0.38 -0.45 16 8 C -0.09 -0.10 5.52 -104.63 -0.58 -0.68 16 9 C 0.11 0.15 5.60 36.00 0.20 0.35 16 10 O -0.36 -0.78 10.22 -41.01 -0.42 -1.20 16 11 C 0.54 1.83 7.93 34.06 0.27 2.10 16 12 O -0.49 -3.00 16.68 -19.36 -0.32 -3.33 16 13 C -0.05 -0.09 7.10 -82.00 -0.58 -0.67 16 14 C -0.06 -0.12 10.60 -39.09 -0.41 -0.54 16 15 C -0.22 -0.05 5.43 -105.02 -0.57 -0.62 16 16 C -0.05 0.03 3.02 36.00 0.11 0.14 16 17 O -0.54 -0.28 12.88 -35.23 -0.45 -0.74 16 18 Si 0.95 -1.45 25.88 -169.99 -4.40 -5.85 16 19 H -0.25 0.28 7.11 56.52 0.40 0.68 16 20 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 21 H -0.25 0.44 7.11 56.52 0.40 0.84 16 22 C 0.04 -0.05 10.43 -17.16 -0.18 -0.23 16 23 N -0.52 0.40 6.07 -9.53 -0.06 0.34 16 24 C -0.11 -0.07 9.70 -39.58 -0.38 -0.45 16 25 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 35 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 36 H 0.12 -0.07 8.06 -52.48 -0.42 -0.49 16 37 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 38 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 39 H 0.16 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 41 H 0.37 -1.04 8.70 45.56 0.40 -0.64 16 42 H 0.17 -0.68 6.20 -52.49 -0.33 -1.01 16 43 H 0.43 -1.27 8.96 -40.82 -0.37 -1.64 16 44 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 45 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 LS Contribution 387.44 15.07 5.84 5.84 Total: 0.00 -7.62 387.44 -8.82 -16.44 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -6.08 Total: -10.04 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.83 Total: 3.82 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.06 Total: 0.34 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -1.20 Total: -5.26 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: -6.49 Total: -11.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -7.62 -8.82 -16.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_9435856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.257 kcal (2) G-P(sol) polarization free energy of solvation -7.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds