Wall clock time and date at job start Sat Mar 6 2021 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 O 1.45202 * 109.47391 * 270.28656 * 9 8 7 11 11 C 1.34888 * 116.99958 * 180.02562 * 10 9 8 12 12 O 1.21626 * 120.00476 * 359.97438 * 11 10 9 13 13 C 1.46498 * 119.99847 * 179.97438 * 11 10 9 14 14 C 1.37987 * 126.26218 * 179.71148 * 13 11 10 15 15 C 1.39804 * 106.96975 * 179.84347 * 14 13 11 16 16 C 1.50695 * 126.08197 * 180.15385 * 15 14 13 17 17 O 1.42900 * 109.47001 * 65.28627 * 16 15 14 18 18 Si 1.86295 * 109.47197 * 185.28273 * 16 15 14 19 19 H 1.48503 * 109.47324 * 60.00376 * 18 16 15 20 20 H 1.48503 * 109.47246 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47374 * 300.00499 * 18 16 15 22 22 C 1.35490 * 107.83936 * 0.41713 * 15 14 13 23 23 N 1.34961 * 108.98426 * 359.74020 * 22 15 14 24 24 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 38 38 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 39 39 H 1.08004 * 126.51753 * 359.96325 * 14 13 11 40 40 H 1.09000 * 109.47437 * 305.28847 * 16 15 14 41 41 H 0.96702 * 114.00447 * 59.99504 * 17 16 15 42 42 H 1.07991 * 125.50704 * 179.75855 * 22 15 14 43 43 H 0.96998 * 125.63249 * 180.02562 * 23 22 15 44 44 H 1.08001 * 120.00310 * 179.72161 * 24 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 8 2.7776 -3.3509 5.8032 11 6 3.0558 -4.0104 6.9465 12 8 4.2118 -4.1989 7.2740 13 6 1.9654 -4.4996 7.7938 14 6 2.1010 -5.1906 8.9805 15 6 0.8104 -5.4543 9.4488 16 6 0.4594 -6.1865 10.7183 17 8 0.9020 -5.4263 11.8445 18 14 -1.3869 -6.4172 10.8118 19 1 -1.8470 -7.2072 9.6415 20 1 -1.7329 -7.1382 12.0632 21 1 -2.0526 -5.0899 10.8056 22 6 -0.0686 -4.9397 8.5554 23 7 0.6177 -4.3591 7.5488 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5134 -3.7509 4.7175 38 1 4.5127 -2.2094 5.6076 39 1 3.0279 -5.4723 9.4578 40 1 0.9480 -7.1608 10.7229 41 1 0.5071 -4.5456 11.9044 42 1 -1.1445 -4.9864 8.6359 43 1 0.2262 -3.9157 6.7800 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10542844_9435856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:40:37 Heat of formation + Delta-G solvation = -88.882377 kcal Electronic energy + Delta-G solvation = -24901.489978 eV Core-core repulsion = 21201.177361 eV Total energy + Delta-G solvation = -3700.312617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64768 -41.25011 -39.97255 -37.66617 -37.63423 -33.23722 -32.61470 -31.93457 -31.05106 -29.45283 -28.30047 -28.27611 -27.75903 -26.42431 -24.56647 -23.53437 -22.15423 -21.51065 -21.03293 -19.99260 -18.42515 -17.81883 -17.71515 -17.39528 -16.65851 -16.25660 -15.97508 -15.93046 -15.54668 -14.98085 -14.85198 -14.62356 -14.39345 -14.23928 -14.15419 -14.04033 -14.02466 -13.86380 -13.72228 -13.59803 -13.47845 -13.12149 -13.11185 -12.97138 -12.75550 -12.34842 -12.15920 -12.10793 -11.97489 -11.80018 -11.69947 -10.93587 -10.81786 -10.76523 -10.34321 -10.06261 -9.85794 -9.74797 -9.50071 0.02770 0.04424 0.47095 1.27281 1.38514 1.47747 1.57213 1.63493 1.81955 1.92031 2.01567 2.02607 2.04891 2.14073 2.65285 2.90522 3.51496 3.70271 3.71736 3.75521 3.88709 4.01631 4.06920 4.16531 4.20103 4.32361 4.49223 4.66144 4.71111 4.81600 4.84209 4.84277 4.88208 4.88817 4.89251 4.90026 4.91272 4.93532 5.08571 5.11263 5.35537 5.47715 5.51992 5.54561 5.58970 5.63356 5.67615 5.70084 6.06534 6.30983 6.50337 6.85259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.130 2.870 3 C -0.464 4.464 4 C -0.464 4.464 5 C -0.370 4.370 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.105 4.105 9 C 0.111 3.889 10 O -0.354 6.354 11 C 0.538 3.462 12 O -0.532 6.532 13 C -0.067 4.067 14 C -0.076 4.076 15 C -0.226 4.226 16 C -0.054 4.054 17 O -0.561 6.561 18 Si 0.991 3.009 19 H -0.251 1.251 20 H -0.281 1.281 21 H -0.240 1.240 22 C 0.060 3.940 23 N -0.508 5.508 24 C -0.119 4.119 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.112 0.888 41 H 0.388 0.612 42 H 0.208 0.792 43 H 0.439 0.561 44 H 0.127 0.873 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 2.487 -4.222 7.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.317 2.683 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.409 4.409 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.105 4.105 9 C 0.038 3.962 10 O -0.271 6.271 11 C 0.385 3.615 12 O -0.422 6.422 13 C -0.177 4.177 14 C -0.103 4.103 15 C -0.232 4.232 16 C -0.164 4.164 17 O -0.368 6.368 18 Si 0.813 3.187 19 H -0.174 1.174 20 H -0.206 1.206 21 H -0.163 1.163 22 C -0.080 4.080 23 N -0.104 5.104 24 C -0.138 4.138 25 C -0.119 4.119 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.237 0.763 42 H 0.224 0.776 43 H 0.280 0.720 44 H 0.145 0.855 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.197 1.879 -4.128 7.679 hybrid contribution 0.746 0.474 -0.140 0.895 sum -5.451 2.353 -4.268 7.312 Atomic orbital electron populations 1.26280 1.21498 1.04501 1.04615 0.77128 0.65204 0.64509 0.61442 1.26295 1.06419 1.19449 1.04899 1.26296 1.06421 1.08526 1.15827 1.28107 1.01999 0.99586 1.11216 1.21402 0.97162 0.95212 0.98104 1.21373 0.98961 1.00224 0.93201 1.19527 1.03022 0.94331 0.93603 1.21939 0.86003 0.98933 0.89342 1.86609 1.40016 1.67267 1.33212 1.20030 0.87582 0.74704 0.79185 1.90914 1.22067 1.56429 1.72798 1.19193 0.82682 1.15538 1.00323 1.21350 0.99008 0.97414 0.92510 1.20040 0.92532 1.09762 1.00846 1.24533 1.13121 0.96524 0.82226 1.86483 1.72318 1.32706 1.45274 0.85154 0.72269 0.81280 0.79950 1.17432 1.20628 1.16339 1.22366 0.99242 0.97894 0.88535 1.41825 1.04465 1.43013 1.21057 1.21375 0.98949 0.93836 0.99596 1.21402 0.97137 1.00854 0.92481 0.91347 0.90659 0.91355 0.91328 0.90655 0.90883 0.90889 0.90654 0.91326 0.84045 0.85503 0.90063 0.90061 0.83945 0.86967 0.76348 0.77578 0.72043 0.85491 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.28 8.65 113.37 0.98 3.26 16 2 Si 1.13 -7.85 12.32 68.60 0.85 -7.00 16 3 C -0.46 2.46 8.53 113.37 0.97 3.43 16 4 C -0.46 2.45 8.53 113.37 0.97 3.42 16 5 C -0.37 0.68 4.59 22.27 0.10 0.78 16 6 C -0.10 0.05 9.29 22.27 0.21 0.26 16 7 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 8 C -0.10 -0.35 5.52 -19.87 -0.11 -0.46 16 9 C 0.11 0.49 5.60 71.24 0.40 0.89 16 10 O -0.35 -2.06 10.22 -58.03 -0.59 -2.65 16 11 C 0.54 4.71 7.93 69.97 0.55 5.26 16 12 O -0.53 -7.90 16.68 19.42 0.32 -7.58 16 13 C -0.07 -0.33 7.10 40.32 0.29 -0.05 16 14 C -0.08 -0.42 10.60 22.59 0.24 -0.18 16 15 C -0.23 -0.09 5.43 -20.12 -0.11 -0.20 16 16 C -0.05 0.06 3.02 71.23 0.22 0.28 16 17 O -0.56 -0.86 12.88 -148.98 -1.92 -2.78 16 18 Si 0.99 -4.21 25.88 68.60 1.78 -2.43 16 19 H -0.25 1.06 7.11 99.48 0.71 1.77 16 20 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 21 H -0.24 1.49 7.11 99.48 0.71 2.20 16 22 C 0.06 -0.24 10.43 83.58 0.87 0.63 16 23 N -0.51 1.04 6.07 -184.05 -1.12 -0.07 16 24 C -0.12 -0.23 9.70 22.27 0.22 -0.02 16 25 C -0.10 0.05 9.29 22.27 0.21 0.26 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 28 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.42 7.96 -2.39 -0.02 -0.43 16 31 H 0.07 -0.42 7.69 -2.38 -0.02 -0.44 16 32 H 0.07 -0.42 7.69 -2.38 -0.02 -0.43 16 33 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 34 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.14 -0.68 7.43 -2.91 -0.02 -0.70 16 36 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 37 H 0.08 0.34 8.08 -2.38 -0.02 0.32 16 38 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 39 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.11 -0.13 7.96 -2.39 -0.02 -0.15 16 41 H 0.39 -2.12 8.70 -74.06 -0.64 -2.77 16 42 H 0.21 -2.28 6.20 -2.92 -0.02 -2.30 16 43 H 0.44 -3.00 8.96 -92.71 -0.83 -3.83 16 44 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 45 H 0.14 -0.69 7.43 -2.91 -0.02 -0.71 16 Total: 0.00 -18.64 387.44 5.81 -12.83 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: 0.29 Total: -7.87 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.21 Total: 17.55 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -1.12 Total: -0.07 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -2.19 Total: -13.01 kcal Atomic # 14 Polarization: -12.06 SS G_CDS: 2.62 Total: -9.43 kcal Total: -18.64 5.81 -12.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10542844_9435856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.054 kcal (2) G-P(sol) polarization free energy of solvation -18.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds