Wall clock time and date at job start Sat Mar 6 2021 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34963 * 125.63683 * 2 1 4 4 C 1.35482 * 108.98527 * 180.26735 * 3 2 1 5 5 C 1.50701 * 126.07909 * 179.70952 * 4 3 2 6 6 O 1.42898 * 109.47484 * 300.00463 * 5 4 3 7 7 Si 1.86303 * 109.47117 * 180.02562 * 5 4 3 8 8 C 1.39803 * 107.84431 * 359.73831 * 4 3 2 9 9 C 1.37699 * 125.63788 * 179.80904 * 2 1 3 10 10 C 1.46496 * 126.25662 * 359.97438 * 9 2 1 11 11 O 1.21627 * 119.99805 * 179.71512 * 10 9 2 12 12 O 1.34886 * 120.00360 * 359.72045 * 10 9 2 13 13 C 1.45200 * 117.00268 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47432 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.47210 * 180.02562 * 14 13 12 16 16 O 1.42968 * 109.46737 * 299.99822 * 14 13 12 17 17 C 1.43091 * 113.77035 * 178.79414 * 16 14 13 18 18 C 1.53255 * 108.94329 * 302.03139 * 17 16 14 19 19 H 1.09001 * 109.67936 * 294.65045 * 18 17 16 20 20 N 1.46500 * 109.57547 * 174.33102 * 18 17 16 21 21 C 1.34532 * 124.46187 * 120.63894 * 20 18 17 22 22 O 1.21444 * 125.70665 * 0.22677 * 21 20 18 23 23 C 1.47816 * 108.57928 * 179.97438 * 21 20 18 24 24 C 1.40943 * 105.87967 * 0.02562 * 23 21 20 25 25 C 1.38567 * 119.81285 * 179.97438 * 24 23 21 26 26 C 1.38614 * 119.72393 * 359.97438 * 25 24 23 27 27 C 1.38231 * 120.46047 * 359.97438 * 26 25 24 28 28 C 1.38572 * 134.29157 * 179.97438 * 23 21 20 29 29 C 1.34529 * 124.46147 * 300.59893 * 20 18 17 30 30 O 1.21439 * 125.70507 * 0.03486 * 29 20 18 31 31 C 1.53259 * 108.84856 * 54.52240 * 18 17 16 32 32 O 1.42967 * 109.47570 * 59.99431 * 14 13 12 33 33 H 1.09000 * 109.46757 * 270.19424 * 1 2 3 34 34 H 1.09004 * 109.46940 * 30.19414 * 1 2 3 35 35 H 1.08998 * 109.47308 * 150.19219 * 1 2 3 36 36 H 1.07999 * 125.50816 * 0.02562 * 3 2 1 37 37 H 1.09002 * 109.47143 * 60.00528 * 5 4 3 38 38 H 0.96704 * 114.00048 * 300.00216 * 6 5 4 39 39 H 1.48506 * 109.99960 * 180.02562 * 7 5 4 40 40 H 1.48498 * 109.99897 * 301.31767 * 7 5 4 41 41 H 1.08003 * 126.51555 * 179.97438 * 8 4 3 42 42 H 1.08996 * 109.47369 * 59.99399 * 13 12 10 43 43 H 1.09005 * 109.46986 * 299.99814 * 13 12 10 44 44 H 1.09001 * 109.56372 * 182.18954 * 17 16 14 45 45 H 1.09000 * 109.55839 * 61.86906 * 17 16 14 46 46 H 1.08007 * 120.14183 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.77214 * 180.02562 * 26 25 24 48 48 H 1.07997 * 119.77548 * 180.02562 * 27 26 25 49 49 H 1.08002 * 120.14186 * 0.02562 * 28 23 21 50 50 H 1.08998 * 109.55588 * 65.31325 * 31 18 17 51 51 H 1.08995 * 109.56292 * 185.63856 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5493 0.7087 -0.0060 5 6 4.7486 1.6213 -0.0142 6 8 4.7136 2.4434 -1.1825 7 14 6.3064 0.5995 -0.0210 8 6 3.5784 -0.6891 -0.0038 9 6 2.2673 -1.1191 0.0037 10 6 1.8120 -2.5115 0.0089 11 8 2.6242 -3.4169 0.0066 12 8 0.4922 -2.7896 0.0161 13 6 0.1138 -4.1914 0.0203 14 6 -1.4117 -4.3080 0.0276 15 1 -1.6957 -5.3603 0.0312 16 8 -1.9327 -3.6702 1.1963 17 6 -3.3607 -3.7014 1.2823 18 6 -3.9489 -3.0283 0.0374 19 1 -3.6859 -1.9705 0.0332 20 7 -5.4068 -3.1716 0.0446 21 6 -6.2729 -2.1422 0.0407 22 8 -5.9747 -0.9651 0.0270 23 6 -7.6483 -2.6839 0.0497 24 6 -7.5103 -4.0865 0.0596 25 6 -8.6393 -4.8897 0.0703 26 6 -9.8972 -4.3073 0.0716 27 6 -10.0324 -2.9317 0.0630 28 6 -8.9121 -2.1156 0.0510 29 6 -6.0559 -4.3500 0.0551 30 8 -5.5340 -5.4465 0.0607 31 6 -3.3725 -3.7057 -1.2107 32 8 -1.9438 -3.6742 -1.1383 33 1 -0.3633 0.0035 1.0277 34 1 -0.3633 0.8883 -0.5169 35 1 -0.3634 -0.8917 -0.5108 36 1 1.9023 2.1189 0.0004 37 1 4.7313 2.2520 0.8746 38 1 4.7265 1.9478 -2.0128 39 1 7.4964 1.4879 -0.0285 40 1 6.3399 -0.2834 1.1725 41 1 4.4596 -1.3135 -0.0077 42 1 0.5198 -4.6747 0.9089 43 1 0.5107 -4.6776 -0.8710 44 1 -3.6844 -3.1652 2.1744 45 1 -3.7007 -4.7358 1.3329 46 1 -8.5398 -5.9652 0.0783 47 1 -10.7777 -4.9326 0.0803 48 1 -11.0178 -2.4896 0.0646 49 1 -9.0237 -1.0414 0.0440 50 1 -3.7129 -4.7402 -1.2545 51 1 -3.7045 -3.1726 -2.1015 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_13594054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:49:31 Heat of formation + Delta-G solvation = -138.312022 kcal Electronic energy + Delta-G solvation = -41977.577175 eV Core-core repulsion = 36391.193371 eV Total energy + Delta-G solvation = -5586.383804 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.144 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.72168 -42.70564 -41.49850 -40.85385 -39.96301 -39.48538 -37.73031 -37.70276 -37.19036 -37.12233 -34.58751 -34.07784 -32.17367 -31.96428 -30.97689 -29.81717 -28.53200 -27.51831 -26.36348 -26.10030 -25.40167 -24.63483 -23.56185 -23.49058 -22.35387 -21.22375 -21.14645 -20.97282 -19.18734 -19.15403 -18.98742 -18.86928 -18.29078 -17.75589 -17.70518 -17.42385 -17.28475 -17.25932 -16.90375 -16.52513 -16.38395 -16.19390 -16.12243 -15.88202 -15.64330 -15.49871 -15.33977 -15.27890 -15.07637 -14.86054 -14.80556 -14.73461 -14.54210 -14.41238 -14.02905 -13.84050 -13.81461 -13.49728 -13.29512 -13.19572 -12.97871 -12.86268 -12.70504 -12.49973 -12.26564 -12.22693 -12.05326 -11.91896 -11.85637 -11.71451 -11.63479 -10.99900 -10.87847 -10.40253 -10.27041 -10.25775 -9.82882 -9.40403 -4.92997 -1.12454 -0.07335 0.07019 0.85801 0.87615 1.32708 1.38498 1.46608 1.60289 1.67321 1.78612 1.93429 2.02615 2.15559 2.20435 2.43124 2.56045 3.05878 3.13328 3.20492 3.39207 3.45472 3.52440 3.62221 3.66474 3.80414 3.84901 3.90690 4.01740 4.03375 4.03742 4.06016 4.13564 4.14849 4.16371 4.19709 4.24502 4.35516 4.36429 4.40816 4.44178 4.52529 4.63758 4.68788 4.78757 4.79588 4.86412 4.97836 5.09823 5.17120 5.24036 5.32136 5.39002 5.53023 5.64027 5.68464 5.77223 5.90747 6.09105 6.33454 6.54595 6.87504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.411 5.411 3 C 0.075 3.925 4 C -0.225 4.225 5 C -0.025 4.025 6 O -0.556 6.556 7 Si 0.761 3.239 8 C -0.098 4.098 9 C -0.070 4.070 10 C 0.539 3.461 11 O -0.529 6.529 12 O -0.341 6.341 13 C 0.081 3.919 14 C 0.243 3.757 15 H 0.107 0.893 16 O -0.383 6.383 17 C 0.051 3.949 18 C 0.077 3.923 19 H 0.124 0.876 20 N -0.569 5.569 21 C 0.578 3.422 22 O -0.486 6.486 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.043 4.043 26 C -0.085 4.085 27 C -0.084 4.084 28 C -0.045 4.045 29 C 0.576 3.424 30 O -0.481 6.481 31 C 0.051 3.949 32 O -0.381 6.381 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.111 0.889 38 H 0.394 0.606 39 H -0.295 1.295 40 H -0.297 1.297 41 H 0.156 0.844 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.155 0.845 47 H 0.175 0.825 48 H 0.175 0.825 49 H 0.154 0.846 50 H 0.073 0.927 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 -1.135 -1.963 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.084 5.084 3 C -0.065 4.065 4 C -0.231 4.231 5 C -0.137 4.137 6 O -0.364 6.364 7 Si 0.669 3.331 8 C -0.124 4.124 9 C -0.179 4.179 10 C 0.387 3.613 11 O -0.419 6.419 12 O -0.258 6.258 13 C 0.007 3.993 14 C 0.149 3.851 15 H 0.124 0.876 16 O -0.302 6.302 17 C -0.027 4.027 18 C -0.025 4.025 19 H 0.142 0.858 20 N -0.313 5.313 21 C 0.369 3.631 22 O -0.359 6.359 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.062 4.062 26 C -0.102 4.102 27 C -0.102 4.102 28 C -0.063 4.063 29 C 0.367 3.633 30 O -0.354 6.354 31 C -0.026 4.026 32 O -0.301 6.301 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.217 0.783 37 H 0.128 0.872 38 H 0.244 0.756 39 H -0.222 1.222 40 H -0.224 1.224 41 H 0.174 0.826 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.091 0.909 46 H 0.173 0.827 47 H 0.193 0.807 48 H 0.193 0.807 49 H 0.171 0.829 50 H 0.091 0.909 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.895 -1.028 -1.122 11.001 hybrid contribution -0.306 -0.186 0.527 0.637 sum -11.202 -1.214 -0.595 11.283 Atomic orbital electron populations 1.22501 0.74175 1.06258 1.04841 1.44160 1.07923 1.04821 1.51457 1.22268 0.89678 0.92590 1.01915 1.19885 0.95436 0.93084 1.14702 1.24244 1.02187 0.96457 0.90831 1.86432 1.97095 1.36525 1.16329 0.93731 0.73878 0.78652 0.86832 1.21367 0.94453 0.94838 1.01745 1.19298 0.91103 0.84083 1.23451 1.19946 0.80724 0.88205 0.72457 1.90902 1.55459 1.47150 1.48394 1.86686 1.24827 1.30079 1.84175 1.23296 0.90671 0.79841 1.05450 1.23809 0.90827 0.94617 0.75882 0.87604 1.88233 1.19996 1.79630 1.42350 1.23028 0.80325 1.01768 0.97530 1.22586 0.76605 1.04651 0.98622 0.85850 1.46456 1.07763 1.08882 1.68240 1.18728 0.86600 0.84290 0.73509 1.90821 1.83555 1.16472 1.45024 1.20446 0.93606 0.94220 1.08035 1.20454 0.92963 0.94911 1.08014 1.21161 0.90076 1.01270 0.93689 1.21963 0.97616 0.95810 0.94850 1.21956 0.99803 0.93599 0.94844 1.21162 0.89111 1.02280 0.93757 1.18720 0.88116 0.82829 0.73586 1.90797 1.74853 1.24813 1.44906 1.23033 0.80335 1.01727 0.97522 1.88226 1.19820 1.79784 1.42248 0.89769 0.86972 0.88812 0.78346 0.87212 0.75622 1.22237 1.22394 0.82619 0.87783 0.87493 0.86736 0.90857 0.82731 0.80722 0.80738 0.82852 0.90882 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.11 10.55 127.77 1.35 1.24 16 2 N -0.41 -1.08 3.15 -534.85 -1.68 -2.76 16 3 C 0.07 0.05 11.25 83.57 0.94 0.99 16 4 C -0.23 -0.58 5.41 -20.12 -0.11 -0.69 16 5 C -0.03 -0.03 3.00 71.24 0.21 0.18 16 6 O -0.56 -0.48 12.87 -148.98 -1.92 -2.39 16 7 Si 0.76 1.36 30.64 68.60 2.10 3.46 16 8 C -0.10 -0.56 9.15 22.59 0.21 -0.35 16 9 C -0.07 -0.51 6.88 40.32 0.28 -0.23 16 10 C 0.54 5.11 7.92 69.97 0.55 5.67 16 11 O -0.53 -7.35 16.68 19.42 0.32 -7.03 16 12 O -0.34 -2.16 7.46 -51.70 -0.39 -2.54 16 13 C 0.08 0.21 5.56 71.98 0.40 0.61 16 14 C 0.24 0.36 3.59 71.98 0.26 0.62 16 15 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 16 O -0.38 -1.31 10.44 -122.14 -1.27 -2.58 16 17 C 0.05 0.05 6.32 72.07 0.46 0.50 16 18 C 0.08 0.07 3.08 45.16 0.14 0.21 16 19 H 0.12 0.23 7.59 -2.39 -0.02 0.21 16 20 N -0.57 -0.82 2.53 -739.57 -1.87 -2.69 16 21 C 0.58 1.67 8.02 86.82 0.70 2.37 16 22 O -0.49 -3.86 17.44 -3.54 -0.06 -3.92 16 23 C -0.16 0.20 6.40 -20.00 -0.13 0.07 16 24 C -0.16 0.26 6.40 -20.00 -0.13 0.13 16 25 C -0.04 0.29 10.09 22.44 0.23 0.52 16 26 C -0.08 0.95 10.04 22.36 0.22 1.17 16 27 C -0.08 0.93 10.04 22.36 0.22 1.16 16 28 C -0.04 0.28 10.09 22.44 0.23 0.51 16 29 C 0.58 1.05 7.35 86.81 0.64 1.69 16 30 O -0.48 -2.55 15.16 -3.52 -0.05 -2.61 16 31 C 0.05 0.03 6.33 72.07 0.46 0.49 16 32 O -0.38 -1.14 10.44 -122.14 -1.27 -2.41 16 33 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.11 -0.74 8.14 -2.38 -0.02 -0.76 16 35 H 0.09 0.09 6.16 -2.39 -0.01 0.08 16 36 H 0.20 -0.93 8.06 -2.91 -0.02 -0.96 16 37 H 0.11 0.15 7.96 -2.39 -0.02 0.13 16 38 H 0.39 -2.51 8.70 -74.05 -0.64 -3.15 16 39 H -0.29 -2.37 7.11 99.48 0.71 -1.66 16 40 H -0.30 -2.46 7.11 99.48 0.71 -1.75 16 41 H 0.16 0.73 6.38 -2.91 -0.02 0.72 16 42 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 44 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.07 0.11 6.65 -2.39 -0.02 0.10 16 46 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 47 H 0.18 -2.98 8.06 -2.91 -0.02 -3.00 16 48 H 0.18 -2.95 8.06 -2.91 -0.02 -2.98 16 49 H 0.15 -1.32 8.06 -2.91 -0.02 -1.34 16 50 H 0.07 0.09 6.69 -2.39 -0.02 0.07 16 51 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: 0.00 -26.28 435.90 1.44 -24.84 By element: Atomic # 1 Polarization: -16.62 SS G_CDS: 0.41 Total: -16.20 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.12 Total: 16.85 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -3.56 Total: -5.45 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -4.64 Total: -23.49 kcal Atomic # 14 Polarization: 1.36 SS G_CDS: 2.10 Total: 3.46 kcal Total: -26.28 1.44 -24.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_13594054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.472 kcal (2) G-P(sol) polarization free energy of solvation -26.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds