Wall clock time and date at job start Sat Mar 6 2021 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34958 * 125.63362 * 2 1 4 4 C 1.35491 * 108.98577 * 180.26590 * 3 2 1 5 5 C 1.50701 * 126.07538 * 179.75013 * 4 3 2 6 6 O 1.42891 * 109.47095 * 65.00572 * 5 4 3 7 7 Si 1.86303 * 109.46576 * 185.00015 * 5 4 3 8 8 C 1.39794 * 107.83831 * 359.73072 * 4 3 2 9 9 C 1.37690 * 125.63937 * 179.79806 * 2 1 3 10 10 C 1.46501 * 126.26366 * 0.02562 * 9 2 1 11 11 O 1.21615 * 120.00180 * 179.71441 * 10 9 2 12 12 O 1.34897 * 119.99554 * 359.71306 * 10 9 2 13 13 C 1.45201 * 117.00013 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47257 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.85043 * 314.66653 * 14 13 12 16 16 C 1.53785 * 113.69093 * 85.93770 * 14 13 12 17 17 C 1.53779 * 87.08093 * 139.99088 * 16 14 13 18 18 H 1.09003 * 113.61186 * 89.11185 * 17 16 14 19 19 O 1.42898 * 113.68812 * 220.00737 * 17 16 14 20 20 C 1.42905 * 113.99838 * 247.53194 * 19 17 16 21 21 C 1.53005 * 109.46965 * 60.00406 * 20 19 17 22 22 C 1.52999 * 109.47295 * 180.02562 * 20 19 17 23 23 C 1.52998 * 109.47208 * 300.00335 * 20 19 17 24 24 C 1.53781 * 113.61293 * 183.47395 * 14 13 12 25 25 H 1.08997 * 109.46883 * 270.19232 * 1 2 3 26 26 H 1.08990 * 109.47036 * 30.20070 * 1 2 3 27 27 H 1.09004 * 109.46515 * 150.19592 * 1 2 3 28 28 H 1.07999 * 125.50792 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47590 * 304.99686 * 5 4 3 30 30 H 0.96701 * 114.00370 * 59.99501 * 6 5 4 31 31 H 1.48506 * 110.00071 * 58.68101 * 7 5 4 32 32 H 1.48501 * 109.99781 * 179.97438 * 7 5 4 33 33 H 1.07999 * 126.51254 * 180.02562 * 8 4 3 34 34 H 1.09005 * 109.46726 * 59.99828 * 13 12 10 35 35 H 1.09004 * 109.46998 * 300.00593 * 13 12 10 36 36 H 1.09003 * 113.60734 * 254.54208 * 16 14 13 37 37 H 1.08996 * 113.61146 * 25.43706 * 16 14 13 38 38 H 1.09001 * 109.47209 * 59.99449 * 21 20 19 39 39 H 1.08992 * 109.47242 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.46797 * 299.99999 * 21 20 19 41 41 H 1.09000 * 109.46904 * 60.00001 * 22 20 19 42 42 H 1.08992 * 109.47169 * 180.02562 * 22 20 19 43 43 H 1.09001 * 109.46790 * 300.00496 * 22 20 19 44 44 H 1.08996 * 109.47210 * 60.00130 * 23 20 19 45 45 H 1.09001 * 109.46843 * 179.97438 * 23 20 19 46 46 H 1.08994 * 109.47066 * 299.99565 * 23 20 19 47 47 H 1.09005 * 113.61302 * 334.47929 * 24 14 13 48 48 H 1.08996 * 113.61527 * 105.30092 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5494 0.7087 -0.0059 5 6 4.7486 1.6215 -0.0133 6 8 4.7889 2.3647 1.2064 7 14 6.3016 0.6049 -0.1727 8 6 3.5785 -0.6889 -0.0036 9 6 2.2674 -1.1190 0.0039 10 6 1.8123 -2.5115 0.0083 11 8 2.6245 -3.4167 0.0063 12 8 0.4923 -2.7896 0.0146 13 6 0.1140 -4.1915 0.0181 14 6 -1.4115 -4.3081 0.0244 15 1 -1.8844 -3.6353 0.7398 16 6 -2.0409 -4.2577 -1.3778 17 6 -3.0036 -5.3572 -0.8993 18 1 -3.9119 -4.9711 -0.4364 19 8 -3.2653 -6.3594 -1.8837 20 6 -4.6091 -6.3599 -2.3698 21 6 -4.9201 -5.0057 -3.0106 22 6 -4.7741 -7.4677 -3.4121 23 6 -5.5721 -6.6070 -1.2069 24 6 -1.9181 -5.7573 0.1139 25 1 -0.3633 0.0034 1.0276 26 1 -0.3633 0.8881 -0.5169 27 1 -0.3632 -0.8918 -0.5108 28 1 1.9022 2.1189 -0.0004 29 1 4.6765 2.3093 -0.8558 30 1 4.8532 1.8155 1.9998 31 1 6.2577 -0.1972 -1.4218 32 1 7.4915 1.4934 -0.1818 33 1 4.4597 -1.3133 -0.0066 34 1 0.5195 -4.6750 0.9069 35 1 0.5116 -4.6773 -0.8731 36 1 -2.5345 -3.3118 -1.6010 37 1 -1.3670 -4.5820 -2.1707 38 1 -4.2340 -4.8297 -3.8391 39 1 -5.9448 -5.0062 -3.3818 40 1 -4.8026 -4.2168 -2.2677 41 1 -4.5526 -8.4323 -2.9553 42 1 -5.7989 -7.4677 -3.7832 43 1 -4.0879 -7.2921 -4.2407 44 1 -5.4547 -5.8180 -0.4640 45 1 -6.5971 -6.6069 -1.5776 46 1 -5.3505 -7.5717 -0.7505 47 1 -1.2107 -6.4917 -0.2714 48 1 -2.3113 -6.0226 1.0952 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_14598394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:25:54 Heat of formation + Delta-G solvation = -85.256720 kcal Electronic energy + Delta-G solvation = -27741.889936 eV Core-core repulsion = 23765.787015 eV Total energy + Delta-G solvation = -3976.102921 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.182 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.68954 -41.30867 -40.66428 -38.56739 -37.71590 -37.34783 -34.08742 -33.90168 -31.25176 -29.65779 -28.51513 -28.35573 -28.27125 -26.66072 -25.91910 -24.51492 -23.34851 -21.26830 -21.14220 -20.84956 -20.49323 -19.02782 -18.25784 -17.73200 -17.63295 -17.28521 -16.78239 -16.52894 -16.27209 -15.91302 -15.79738 -15.51930 -15.27861 -14.82784 -14.76469 -14.56742 -14.45131 -14.05571 -14.02330 -13.67027 -13.48802 -13.33584 -13.33185 -13.14279 -13.00268 -12.95198 -12.80369 -12.66856 -12.43551 -12.25840 -12.19541 -12.06326 -11.96164 -11.84509 -11.60952 -11.35806 -11.19008 -10.38076 -10.37305 -9.82161 -9.40239 -4.93816 0.08269 1.37759 1.40252 1.46178 1.67895 1.80518 1.94736 2.01683 2.71696 3.35774 3.50291 3.56863 3.63995 3.75016 3.80291 3.86854 3.90436 3.96846 4.03547 4.08177 4.11399 4.17306 4.18005 4.31522 4.41155 4.41715 4.48313 4.62090 4.62836 4.66184 4.71573 4.75073 4.76222 4.77677 4.81053 4.85439 4.90713 4.93482 4.99344 5.00035 5.10786 5.14321 5.20654 5.30914 5.32659 5.38651 5.53339 5.78182 6.11509 6.41711 6.57933 6.87684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.411 5.411 3 C 0.076 3.924 4 C -0.227 4.227 5 C -0.023 4.023 6 O -0.556 6.556 7 Si 0.757 3.243 8 C -0.100 4.100 9 C -0.071 4.071 10 C 0.538 3.462 11 O -0.534 6.534 12 O -0.349 6.349 13 C 0.079 3.921 14 C -0.098 4.098 15 H 0.121 0.879 16 C -0.148 4.148 17 C 0.060 3.940 18 H 0.106 0.894 19 O -0.384 6.384 20 C 0.098 3.902 21 C -0.173 4.173 22 C -0.141 4.141 23 C -0.176 4.176 24 C -0.127 4.127 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.202 0.798 29 H 0.112 0.888 30 H 0.394 0.606 31 H -0.298 1.298 32 H -0.296 1.296 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 2.072 2.448 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.084 5.084 3 C -0.063 4.063 4 C -0.233 4.233 5 C -0.135 4.135 6 O -0.364 6.364 7 Si 0.665 3.335 8 C -0.126 4.126 9 C -0.180 4.180 10 C 0.385 3.615 11 O -0.424 6.424 12 O -0.266 6.266 13 C 0.005 3.995 14 C -0.116 4.116 15 H 0.139 0.861 16 C -0.186 4.186 17 C 0.003 3.997 18 H 0.124 0.876 19 O -0.304 6.304 20 C 0.059 3.941 21 C -0.230 4.230 22 C -0.198 4.198 23 C -0.234 4.234 24 C -0.165 4.165 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.219 0.781 29 H 0.129 0.871 30 H 0.244 0.756 31 H -0.226 1.226 32 H -0.223 1.223 33 H 0.172 0.828 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.835 1.874 1.496 7.243 hybrid contribution -0.235 -0.034 -0.451 0.510 sum -7.070 1.840 1.046 7.380 Atomic orbital electron populations 1.22607 0.73823 1.06392 1.05439 1.44183 1.08183 1.04585 1.51430 1.22289 0.89611 0.92682 1.01745 1.19878 0.95560 0.93046 1.14831 1.24192 1.01900 0.97510 0.89925 1.86434 1.96754 1.37227 1.15958 0.93776 0.74284 0.79597 0.85836 1.21380 0.94613 0.94884 1.01766 1.19286 0.91128 0.84130 1.23490 1.19957 0.80993 0.88064 0.72455 1.90904 1.55689 1.47464 1.48343 1.86570 1.24529 1.31365 1.84169 1.23196 0.95956 0.77750 1.02583 1.22321 0.91334 0.98687 0.99264 0.86068 1.23591 0.98887 0.99675 0.96398 1.23679 0.97179 0.89160 0.89697 0.87611 1.88025 1.29412 1.55296 1.57642 1.21680 0.82128 0.96106 0.94174 1.22437 1.02758 0.96458 1.01385 1.21803 1.02821 0.97441 0.97728 1.22445 1.00129 1.02451 0.98350 1.23230 0.97802 0.95416 1.00019 0.88844 0.86913 0.88609 0.78141 0.87074 0.75637 1.22572 1.22346 0.82794 0.90750 0.91813 0.89946 0.90696 0.92624 0.90608 0.91705 0.92383 0.89716 0.92588 0.91536 0.90439 0.92288 0.89883 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.41 10.55 127.77 1.35 0.94 16 2 N -0.41 0.27 3.15 -534.84 -1.68 -1.41 16 3 C 0.08 -0.14 11.26 83.58 0.94 0.80 16 4 C -0.23 -0.21 5.40 -20.12 -0.11 -0.32 16 5 C -0.02 0.00 3.00 71.24 0.21 0.21 16 6 O -0.56 0.11 12.88 -148.98 -1.92 -1.81 16 7 Si 0.76 0.90 30.66 68.60 2.10 3.00 16 8 C -0.10 -0.42 9.15 22.59 0.21 -0.22 16 9 C -0.07 -0.35 6.88 40.32 0.28 -0.08 16 10 C 0.54 4.16 7.92 69.98 0.55 4.71 16 11 O -0.53 -7.39 16.68 19.46 0.32 -7.07 16 12 O -0.35 -0.98 7.66 -58.11 -0.44 -1.42 16 13 C 0.08 0.09 5.31 71.98 0.38 0.47 16 14 C -0.10 0.34 4.02 -10.27 -0.04 0.30 16 15 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 16 C -0.15 0.31 7.47 31.12 0.23 0.54 16 17 C 0.06 -0.10 2.81 31.12 0.09 -0.02 16 18 H 0.11 -0.49 5.54 -2.39 -0.01 -0.51 16 19 O -0.38 -1.22 10.00 -148.98 -1.49 -2.71 16 20 C 0.10 -0.04 1.11 -10.79 -0.01 -0.05 16 21 C -0.17 0.43 8.39 71.98 0.60 1.03 16 22 C -0.14 0.07 8.84 71.98 0.64 0.71 16 23 C -0.18 0.51 8.38 71.98 0.60 1.11 16 24 C -0.13 0.31 7.47 31.12 0.23 0.55 16 25 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.11 -1.33 8.14 -2.39 -0.02 -1.35 16 27 H 0.10 -0.54 6.15 -2.39 -0.01 -0.56 16 28 H 0.20 -1.51 8.06 -2.91 -0.02 -1.54 16 29 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H 0.39 -2.88 8.70 -74.06 -0.64 -3.53 16 31 H -0.30 -2.38 7.11 99.48 0.71 -1.67 16 32 H -0.30 -2.26 7.11 99.48 0.71 -1.55 16 33 H 0.15 0.55 6.40 -2.91 -0.02 0.53 16 34 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.06 0.23 7.87 -2.39 -0.02 0.21 16 36 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.07 0.11 7.92 -2.39 -0.02 0.09 16 38 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.06 -0.25 7.02 -2.39 -0.02 -0.26 16 41 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.07 -0.29 6.24 -2.39 -0.01 -0.31 16 45 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.08 0.02 8.10 -2.38 -0.02 0.00 16 48 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -18.11 389.01 3.39 -14.72 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: 0.34 Total: -14.02 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.16 Total: 10.70 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -1.68 Total: -1.41 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -3.53 Total: -13.00 kcal Atomic # 14 Polarization: 0.90 SS G_CDS: 2.10 Total: 3.00 kcal Total: -18.11 3.39 -14.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_14598394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.534 kcal (2) G-P(sol) polarization free energy of solvation -18.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds