Wall clock time and date at job start Sat Mar 6 2021 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34955 * 125.64234 * 2 1 4 4 C 1.35480 * 108.99097 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.07734 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47063 * 299.99978 * 5 4 3 7 7 Si 1.86302 * 109.46760 * 180.02562 * 5 4 3 8 8 C 1.39799 * 107.84151 * 359.77789 * 4 3 2 9 9 C 1.37703 * 125.63500 * 180.02562 * 2 1 3 10 10 C 1.46498 * 126.26261 * 359.93080 * 9 2 1 11 11 O 1.21618 * 120.00055 * 179.97438 * 10 9 2 12 12 O 1.34889 * 119.99881 * 359.97438 * 10 9 2 13 13 C 1.45200 * 117.00338 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47598 * 180.02562 * 13 12 10 15 15 H 1.08996 * 112.84840 * 316.19774 * 14 13 12 16 16 C 1.54048 * 113.69305 * 87.46574 * 14 13 12 17 17 C 1.53784 * 86.98274 * 139.99074 * 16 14 13 18 18 H 1.08997 * 113.61666 * 219.97879 * 17 16 14 19 19 N 1.46504 * 113.61186 * 89.16318 * 17 16 14 20 20 C 1.34771 * 120.00294 * 105.86510 * 19 17 16 21 21 O 1.21515 * 120.00158 * 359.97438 * 20 19 17 22 22 O 1.34637 * 120.00399 * 179.97438 * 20 19 17 23 23 C 1.45194 * 117.00311 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.46979 * 60.00565 * 23 22 20 25 25 C 1.52997 * 109.47240 * 300.00529 * 23 22 20 26 26 C 1.52999 * 109.47457 * 180.02562 * 23 22 20 27 27 C 1.53779 * 87.17421 * 334.56956 * 17 16 14 28 28 H 1.08996 * 109.46753 * 269.96036 * 1 2 3 29 29 H 1.08995 * 109.46766 * 29.95835 * 1 2 3 30 30 H 1.08999 * 109.46884 * 149.96100 * 1 2 3 31 31 H 1.08006 * 125.50241 * 0.05727 * 3 2 1 32 32 H 1.08996 * 109.46972 * 60.00123 * 5 4 3 33 33 H 0.96697 * 114.00132 * 180.02562 * 6 5 4 34 34 H 1.48498 * 110.00163 * 298.67850 * 7 5 4 35 35 H 1.48504 * 110.00158 * 60.00220 * 7 5 4 36 36 H 1.08000 * 126.51177 * 180.23500 * 8 4 3 37 37 H 1.08998 * 109.47087 * 59.99930 * 13 12 10 38 38 H 1.09002 * 109.47099 * 300.00381 * 13 12 10 39 39 H 1.08995 * 113.61751 * 25.49115 * 16 14 13 40 40 H 1.08996 * 113.69929 * 254.50418 * 16 14 13 41 41 H 0.97003 * 119.99776 * 285.86075 * 19 17 16 42 42 H 1.09001 * 109.47002 * 299.99655 * 24 23 22 43 43 H 1.08993 * 109.46955 * 60.00092 * 24 23 22 44 44 H 1.09000 * 109.47050 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47140 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47230 * 299.99118 * 25 23 22 47 47 H 1.09001 * 109.47375 * 59.99957 * 25 23 22 48 48 H 1.09001 * 109.47362 * 300.00827 * 26 23 22 49 49 H 1.09002 * 109.46716 * 60.00187 * 26 23 22 50 50 H 1.09000 * 109.47486 * 180.02562 * 26 23 22 51 51 H 1.08999 * 113.61486 * 140.01925 * 27 17 16 52 52 H 1.08994 * 113.61443 * 270.84509 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0967 0.0000 4 6 3.5494 0.7085 -0.0006 5 6 4.7487 1.6212 -0.0013 6 8 4.7192 2.4455 -1.1682 7 14 6.3065 0.5994 -0.0027 8 6 3.5785 -0.6892 0.0042 9 6 2.2673 -1.1192 -0.0005 10 6 1.8121 -2.5116 0.0003 11 8 2.6243 -3.4169 -0.0007 12 8 0.4922 -2.7897 0.0022 13 6 0.1138 -4.1915 0.0023 14 6 -1.4118 -4.3081 0.0039 15 1 -1.8883 -3.6176 0.6998 16 6 -2.0353 -4.2928 -1.4047 17 6 -2.9993 -5.3800 -0.9013 18 1 -3.1952 -6.1631 -1.6337 19 7 -4.2231 -4.8459 -0.2986 20 6 -5.3905 -4.9163 -0.9684 21 8 -5.4279 -5.4224 -2.0725 22 8 -6.5153 -4.4258 -0.4143 23 6 -7.7357 -4.5353 -1.1932 24 6 -8.0276 -6.0098 -1.4792 25 6 -7.5666 -3.7831 -2.5147 26 6 -8.8990 -3.9280 -0.4065 27 6 -1.9189 -5.7546 0.1270 28 1 -0.3633 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5144 31 1 1.9024 2.1188 0.0009 32 1 4.7271 2.2502 0.8886 33 1 5.4633 3.0594 -1.2350 34 1 6.3649 -0.2394 1.2213 35 1 6.3477 -0.2624 -1.2114 36 1 4.4596 -1.3136 0.0086 37 1 0.5165 -4.6765 0.8915 38 1 0.5139 -4.6760 -0.8884 39 1 -1.3579 -4.6376 -2.1858 40 1 -2.5287 -3.3537 -1.6552 41 1 -4.1932 -4.4416 0.5827 42 1 -7.1988 -6.4421 -2.0399 43 1 -8.1481 -6.5456 -0.5378 44 1 -8.9441 -6.0920 -2.0635 45 1 -8.4827 -3.8657 -3.0996 46 1 -7.3589 -2.7327 -2.3109 47 1 -6.7379 -4.2154 -3.0754 48 1 -9.0196 -4.4635 0.5353 49 1 -8.6909 -2.8776 -0.2030 50 1 -9.8154 -4.0106 -0.9910 51 1 -2.3185 -5.9949 1.1122 52 1 -1.2105 -6.4994 -0.2357 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_15734084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:56:21 Heat of formation + Delta-G solvation = -116.742903 kcal Electronic energy + Delta-G solvation = -33290.825555 eV Core-core repulsion = 28645.485428 eV Total energy + Delta-G solvation = -4645.340127 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.81753 -42.00915 -41.29267 -40.32351 -38.09588 -37.66384 -37.52609 -35.40560 -34.32599 -34.10957 -31.38677 -29.69033 -28.59383 -28.40270 -28.33121 -26.83472 -26.03819 -24.90393 -24.04980 -23.10083 -21.35343 -21.22802 -21.10053 -20.28526 -19.37759 -18.73167 -18.29355 -18.24780 -17.79122 -17.64675 -17.24467 -16.84563 -16.64289 -16.28767 -15.92417 -15.71746 -15.51747 -15.38904 -15.27097 -15.06416 -14.83493 -14.58534 -14.46088 -14.10850 -13.95983 -13.72299 -13.53082 -13.42878 -13.37745 -13.26110 -13.17383 -13.06492 -12.95361 -12.90132 -12.57645 -12.53596 -12.37292 -12.31943 -12.07099 -12.02600 -11.94026 -11.66629 -11.43406 -11.28324 -11.16762 -10.30278 -10.25433 -9.93368 -9.48598 -4.97400 -0.08060 1.07382 1.25049 1.28974 1.42840 1.66821 1.68039 1.68557 1.78273 2.08551 3.05510 3.26188 3.32115 3.45374 3.61176 3.67910 3.69526 3.70809 3.76694 3.79472 3.91070 3.97886 4.07871 4.10322 4.21765 4.27614 4.31753 4.35224 4.42964 4.54426 4.56586 4.58028 4.62790 4.66672 4.67576 4.71037 4.73323 4.78900 4.84658 4.84859 4.88511 4.91084 4.94818 4.99287 5.08946 5.15559 5.23740 5.28182 5.35153 5.41896 5.56529 5.62771 6.01122 6.32962 6.45487 7.02405 7.28505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.408 5.408 3 C 0.084 3.916 4 C -0.199 4.199 5 C -0.028 4.028 6 O -0.564 6.564 7 Si 0.770 3.230 8 C -0.125 4.125 9 C -0.066 4.066 10 C 0.541 3.459 11 O -0.537 6.537 12 O -0.347 6.347 13 C 0.072 3.928 14 C -0.099 4.099 15 H 0.116 0.884 16 C -0.146 4.146 17 C 0.134 3.866 18 H 0.095 0.905 19 N -0.682 5.682 20 C 0.646 3.354 21 O -0.593 6.593 22 O -0.368 6.368 23 C 0.128 3.872 24 C -0.181 4.181 25 C -0.180 4.180 26 C -0.138 4.138 27 C -0.121 4.121 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.101 0.899 33 H 0.403 0.597 34 H -0.300 1.300 35 H -0.313 1.313 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.418 0.582 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.097 0.903 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 6.673 3.928 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.081 5.081 3 C -0.055 4.055 4 C -0.205 4.205 5 C -0.140 4.140 6 O -0.374 6.374 7 Si 0.679 3.321 8 C -0.152 4.152 9 C -0.176 4.176 10 C 0.388 3.612 11 O -0.428 6.428 12 O -0.263 6.263 13 C -0.001 4.001 14 C -0.117 4.117 15 H 0.134 0.866 16 C -0.184 4.184 17 C 0.029 3.971 18 H 0.113 0.887 19 N -0.342 5.342 20 C 0.400 3.600 21 O -0.484 6.484 22 O -0.282 6.282 23 C 0.091 3.909 24 C -0.238 4.238 25 C -0.237 4.237 26 C -0.195 4.195 27 C -0.159 4.159 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.230 0.770 32 H 0.119 0.881 33 H 0.254 0.746 34 H -0.228 1.228 35 H -0.241 1.241 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.117 0.883 51 H 0.116 0.884 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.778 4.938 3.283 7.031 hybrid contribution -0.130 -0.582 0.182 0.623 sum -3.908 4.356 3.464 6.801 Atomic orbital electron populations 1.22661 0.73225 1.06647 1.05679 1.44216 1.08394 1.04359 1.51114 1.22366 0.89032 0.92990 1.01108 1.19142 0.95224 0.92065 1.14023 1.23860 1.01452 0.97208 0.91492 1.86425 1.53100 1.55248 1.42646 0.94984 0.81050 0.80688 0.75347 1.21153 0.94459 0.95469 1.04106 1.19211 0.90657 0.84746 1.23017 1.19835 0.81253 0.87711 0.72400 1.90899 1.55904 1.47461 1.48503 1.86578 1.23818 1.31946 1.84007 1.23367 0.96219 0.77469 1.03084 1.22723 0.91047 0.99153 0.98818 0.86583 1.23613 0.98140 0.99763 0.96916 1.21772 0.81765 0.96729 0.96825 0.88713 1.44331 1.04322 1.63613 1.21915 1.18312 0.81731 0.77201 0.82779 1.90917 1.86305 1.50100 1.21060 1.86308 1.16738 1.75805 1.49399 1.22357 0.80533 0.96723 0.91246 1.22480 1.03726 0.94754 1.02826 1.22472 1.04246 1.00294 0.96706 1.21892 0.95123 1.01618 1.00827 1.23325 0.96392 0.95640 1.00558 0.88482 0.86535 0.88571 0.77028 0.88122 0.74603 1.22788 1.24145 0.85493 0.90558 0.91003 0.88584 0.91071 0.74487 0.91825 0.91895 0.89491 0.89507 0.91848 0.91862 0.91151 0.91086 0.88346 0.88438 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.33 10.56 127.77 1.35 1.02 16 2 N -0.41 -0.87 3.15 -534.86 -1.68 -2.56 16 3 C 0.08 0.08 11.25 83.58 0.94 1.02 16 4 C -0.20 -1.13 5.44 -20.12 -0.11 -1.24 16 5 C -0.03 0.00 2.99 71.24 0.21 0.22 16 6 O -0.56 0.52 12.85 -148.98 -1.91 -1.40 16 7 Si 0.77 1.24 30.64 68.60 2.10 3.35 16 8 C -0.13 -1.40 9.15 22.59 0.21 -1.19 16 9 C -0.07 -0.61 6.89 40.32 0.28 -0.33 16 10 C 0.54 5.58 7.92 69.97 0.55 6.13 16 11 O -0.54 -8.99 16.68 19.45 0.32 -8.67 16 12 O -0.35 -1.20 7.65 -58.03 -0.44 -1.64 16 13 C 0.07 -0.02 5.32 71.98 0.38 0.36 16 14 C -0.10 0.55 3.91 -10.18 -0.04 0.51 16 15 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 16 C -0.15 0.45 7.45 31.21 0.23 0.68 16 17 C 0.13 -0.32 4.30 45.52 0.20 -0.12 16 18 H 0.09 0.14 7.50 -2.39 -0.02 0.12 16 19 N -0.68 0.82 5.27 -567.61 -2.99 -2.17 16 20 C 0.65 3.59 8.06 129.79 1.05 4.64 16 21 O -0.59 -6.74 11.50 19.79 0.23 -6.51 16 22 O -0.37 -1.58 9.94 -55.46 -0.55 -2.14 16 23 C 0.13 0.28 1.13 -10.79 -0.01 0.26 16 24 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 25 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 26 C -0.14 0.40 8.85 71.98 0.64 1.04 16 27 C -0.12 0.84 7.38 31.12 0.23 1.07 16 28 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 30 H 0.10 -0.41 6.15 -2.39 -0.01 -0.43 16 31 H 0.21 -1.40 8.06 -2.91 -0.02 -1.42 16 32 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 33 H 0.40 -4.59 8.74 -74.06 -0.65 -5.23 16 34 H -0.30 -2.56 7.11 99.48 0.71 -1.85 16 35 H -0.31 -3.59 7.11 99.48 0.71 -2.88 16 36 H 0.13 1.77 6.38 -2.91 -0.02 1.76 16 37 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.07 0.07 7.85 -2.39 -0.02 0.05 16 39 H 0.10 -0.26 7.91 -2.39 -0.02 -0.28 16 40 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.42 -2.51 8.81 -92.71 -0.82 -3.32 16 42 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 43 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 44 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 47 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 48 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 49 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 51 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 52 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 Total: 0.00 -28.38 424.28 1.90 -26.48 By element: Atomic # 1 Polarization: -18.59 SS G_CDS: -0.48 Total: -19.07 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 7.31 Total: 14.32 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -4.67 Total: -4.73 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -2.36 Total: -20.35 kcal Atomic # 14 Polarization: 1.24 SS G_CDS: 2.10 Total: 3.35 kcal Total: -28.38 1.90 -26.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_15734084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.259 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds