Wall clock time and date at job start Sat Mar 6 2021 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34953 * 125.63722 * 2 1 4 4 C 1.35496 * 108.98428 * 180.29903 * 3 2 1 5 5 C 1.50701 * 126.07914 * 179.70879 * 4 3 2 6 6 O 1.42897 * 109.47115 * 65.00077 * 5 4 3 7 7 Si 1.86299 * 109.46980 * 185.00323 * 5 4 3 8 8 C 1.39793 * 107.84000 * 359.73175 * 4 3 2 9 9 C 1.37696 * 125.63117 * 179.83944 * 2 1 3 10 10 C 1.46495 * 126.26468 * 359.96419 * 9 2 1 11 11 O 1.21625 * 120.00035 * 179.71451 * 10 9 2 12 12 O 1.34885 * 120.00035 * 359.71705 * 10 9 2 13 13 C 1.45202 * 117.00215 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47402 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.84828 * 43.80096 * 14 13 12 16 16 C 1.53773 * 113.61481 * 174.99931 * 14 13 12 17 17 C 1.53790 * 87.08083 * 140.06378 * 16 14 13 18 18 H 1.09000 * 113.60766 * 89.20016 * 17 16 14 19 19 N 1.46494 * 113.61312 * 220.01994 * 17 16 14 20 20 C 1.34784 * 119.99635 * 203.47065 * 19 17 16 21 21 O 1.21507 * 119.99849 * 0.02562 * 20 19 17 22 22 O 1.34638 * 119.99962 * 179.97438 * 20 19 17 23 23 C 1.45198 * 117.00226 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.46841 * 60.00132 * 23 22 20 25 25 C 1.53000 * 109.47375 * 180.02562 * 23 22 20 26 26 C 1.53004 * 109.46900 * 300.00157 * 23 22 20 27 27 C 1.53785 * 87.16911 * 334.60876 * 17 16 14 28 28 H 1.08997 * 109.47231 * 270.16147 * 1 2 3 29 29 H 1.08999 * 109.46660 * 30.16160 * 1 2 3 30 30 H 1.08996 * 109.46990 * 150.15390 * 1 2 3 31 31 H 1.07998 * 125.51127 * 0.03060 * 3 2 1 32 32 H 1.09001 * 109.47103 * 305.00258 * 5 4 3 33 33 H 0.96701 * 114.00108 * 59.99532 * 6 5 4 34 34 H 1.48503 * 109.99858 * 180.02562 * 7 5 4 35 35 H 1.48505 * 109.99708 * 301.31851 * 7 5 4 36 36 H 1.08002 * 126.51397 * 180.02562 * 8 4 3 37 37 H 1.08998 * 109.47175 * 60.00109 * 13 12 10 38 38 H 1.09003 * 109.46680 * 300.00132 * 13 12 10 39 39 H 1.08995 * 113.61786 * 25.51559 * 16 14 13 40 40 H 1.08999 * 113.61573 * 254.60871 * 16 14 13 41 41 H 0.96995 * 120.00292 * 23.74497 * 19 17 16 42 42 H 1.08998 * 109.47144 * 60.00092 * 24 23 22 43 43 H 1.08999 * 109.46619 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.46980 * 300.00159 * 24 23 22 45 45 H 1.08997 * 109.47145 * 59.99526 * 25 23 22 46 46 H 1.08999 * 109.47198 * 180.02562 * 25 23 22 47 47 H 1.09006 * 109.46544 * 299.99685 * 25 23 22 48 48 H 1.09005 * 109.46836 * 60.00141 * 26 23 22 49 49 H 1.08999 * 109.46845 * 179.97438 * 26 23 22 50 50 H 1.08994 * 109.47403 * 299.99729 * 26 23 22 51 51 H 1.09001 * 113.60566 * 139.93886 * 27 17 16 52 52 H 1.08989 * 113.61520 * 270.83765 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5495 0.7085 -0.0067 5 6 4.7487 1.6211 -0.0152 6 8 4.7900 2.3648 1.2043 7 14 6.3016 0.6043 -0.1754 8 6 3.5784 -0.6891 -0.0048 9 6 2.2672 -1.1192 0.0031 10 6 1.8120 -2.5116 0.0078 11 8 2.6241 -3.4169 0.0050 12 8 0.4921 -2.7896 0.0151 13 6 0.1137 -4.1915 0.0188 14 6 -1.4118 -4.3080 0.0263 15 1 -1.8924 -3.6182 -0.6675 16 6 -1.9197 -5.7546 -0.0921 17 6 -2.9940 -5.3788 0.9422 18 1 -3.9077 -4.9833 0.4986 19 7 -3.2500 -6.4294 1.9305 20 6 -4.4306 -6.4710 2.5794 21 8 -5.2827 -5.6373 2.3443 22 8 -4.6661 -7.4368 3.4874 23 6 -5.9590 -7.4196 4.1479 24 6 -7.0675 -7.5590 3.1025 25 6 -6.0416 -8.5833 5.1378 26 6 -6.1301 -6.0981 4.8997 27 6 -2.0278 -4.2896 1.4372 28 1 -0.3633 0.0029 1.0276 29 1 -0.3632 0.8885 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 1.9024 2.1188 0.0005 32 1 4.6761 2.3087 -0.8578 33 1 4.8546 1.8159 1.9978 34 1 7.4916 1.4926 -0.1843 35 1 6.3961 -0.3592 0.9507 36 1 4.4596 -1.3136 -0.0085 37 1 0.5198 -4.6751 0.9072 38 1 0.5104 -4.6772 -0.8728 39 1 -1.2084 -6.4979 0.2676 40 1 -2.3252 -5.9959 -1.0747 41 1 -2.5684 -7.0927 2.1209 42 1 -6.9456 -8.5005 2.5670 43 1 -8.0381 -7.5457 3.5983 44 1 -7.0085 -6.7298 2.3976 45 1 -5.2519 -8.4836 5.8824 46 1 -7.0124 -8.5707 5.6333 47 1 -5.9196 -9.5250 4.6025 48 1 -6.0712 -5.2688 4.1946 49 1 -7.1009 -6.0850 5.3951 50 1 -5.3405 -5.9987 5.6443 51 1 -2.5205 -3.3500 1.6873 52 1 -1.3461 -4.6316 2.2157 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_15734238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:56:24 Heat of formation + Delta-G solvation = -118.866826 kcal Electronic energy + Delta-G solvation = -33052.402461 eV Core-core repulsion = 28406.970234 eV Total energy + Delta-G solvation = -4645.432227 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.68069 -41.93238 -41.18000 -40.19354 -38.07534 -37.87545 -37.42375 -35.42641 -34.28151 -34.05561 -31.23160 -29.57430 -28.46975 -28.39447 -28.32937 -26.78754 -25.99352 -24.95236 -24.00027 -22.43359 -21.48185 -21.17223 -21.13260 -20.46356 -19.20421 -19.00587 -18.30925 -17.72454 -17.66898 -17.37292 -17.20496 -16.86367 -16.52730 -16.22562 -16.15580 -15.70638 -15.56918 -15.40607 -15.39160 -14.82440 -14.73210 -14.58305 -14.44582 -13.95109 -13.72735 -13.63573 -13.51499 -13.39154 -13.29511 -13.18714 -13.08419 -12.95064 -12.89508 -12.87441 -12.54164 -12.47160 -12.39369 -12.29313 -12.05433 -11.89789 -11.84683 -11.63785 -11.42092 -11.30244 -11.12935 -10.54554 -10.18326 -9.83341 -9.39277 -4.86019 0.09683 1.13410 1.36604 1.43366 1.50789 1.65524 1.70733 1.80493 1.95937 2.01238 3.11314 3.32971 3.39402 3.52708 3.57424 3.71042 3.71691 3.77546 3.80084 3.86592 3.91780 4.04744 4.14674 4.18707 4.23508 4.34215 4.41323 4.42788 4.48612 4.58604 4.59833 4.67720 4.70228 4.72566 4.73739 4.74337 4.76203 4.82088 4.84890 4.86442 4.93141 5.00351 5.01674 5.05710 5.15398 5.23781 5.24345 5.30197 5.47468 5.54164 5.57057 5.79070 6.12254 6.36838 6.57356 6.60448 7.30999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.410 5.410 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.034 4.034 6 O -0.549 6.549 7 Si 0.751 3.249 8 C -0.102 4.102 9 C -0.071 4.071 10 C 0.540 3.460 11 O -0.533 6.533 12 O -0.351 6.351 13 C 0.077 3.923 14 C -0.096 4.096 15 H 0.118 0.882 16 C -0.122 4.122 17 C 0.136 3.864 18 H 0.110 0.890 19 N -0.691 5.691 20 C 0.643 3.357 21 O -0.594 6.594 22 O -0.371 6.371 23 C 0.127 3.873 24 C -0.180 4.180 25 C -0.138 4.138 26 C -0.180 4.180 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.202 0.798 32 H 0.131 0.869 33 H 0.384 0.616 34 H -0.300 1.300 35 H -0.297 1.297 36 H 0.151 0.849 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.417 0.583 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -0.712 -1.817 4.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.083 5.083 3 C -0.063 4.063 4 C -0.230 4.230 5 C -0.145 4.145 6 O -0.357 6.357 7 Si 0.658 3.342 8 C -0.128 4.128 9 C -0.180 4.180 10 C 0.387 3.613 11 O -0.423 6.423 12 O -0.268 6.268 13 C 0.003 3.997 14 C -0.115 4.115 15 H 0.136 0.864 16 C -0.160 4.160 17 C 0.032 3.968 18 H 0.128 0.872 19 N -0.350 5.350 20 C 0.397 3.603 21 O -0.484 6.484 22 O -0.286 6.286 23 C 0.091 3.909 24 C -0.237 4.237 25 C -0.195 4.195 26 C -0.237 4.237 27 C -0.185 4.185 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.219 0.781 32 H 0.148 0.852 33 H 0.233 0.767 34 H -0.228 1.228 35 H -0.224 1.224 36 H 0.168 0.832 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.254 0.746 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.773 -0.472 -1.926 4.262 hybrid contribution 0.116 -0.298 1.415 1.450 sum -3.657 -0.770 -0.511 3.771 Atomic orbital electron populations 1.22599 0.73838 1.06667 1.05128 1.44183 1.08148 1.04631 1.51354 1.22296 0.89577 0.92715 1.01687 1.19801 0.95442 0.92969 1.14769 1.24272 1.01946 0.98785 0.89458 1.86548 1.95468 1.37265 1.16408 0.94111 0.73933 0.77518 0.88616 1.21365 0.94603 0.94991 1.01827 1.19305 0.91031 0.84279 1.23387 1.19892 0.81010 0.87954 0.72446 1.90906 1.55690 1.47373 1.48360 1.86577 1.24428 1.31672 1.84150 1.23252 0.95574 0.77714 1.03130 1.22352 0.91614 0.98935 0.98580 0.86388 1.23357 0.96756 0.95807 1.00111 1.22566 0.98299 0.87381 0.88539 0.87247 1.44798 1.14511 1.33804 1.41919 1.18433 0.83448 0.79950 0.78506 1.90897 1.46230 1.42551 1.68770 1.86315 1.40280 1.50098 1.51871 1.22351 0.78639 0.97784 0.92170 1.22469 0.98745 1.02835 0.99622 1.21894 1.04193 0.95839 0.97591 1.22470 1.03528 0.97018 1.00669 1.23642 0.98293 0.99582 0.96996 0.89506 0.86734 0.88244 0.78128 0.85154 0.76724 1.22776 1.22358 0.83168 0.91036 0.90326 0.87686 0.88422 0.74626 0.91931 0.89491 0.91691 0.91273 0.88317 0.91175 0.91720 0.89475 0.92075 0.90843 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.42 10.55 127.77 1.35 0.93 16 2 N -0.41 0.50 3.15 -534.85 -1.68 -1.18 16 3 C 0.08 -0.18 11.26 83.58 0.94 0.76 16 4 C -0.22 -0.08 5.40 -20.12 -0.11 -0.19 16 5 C -0.03 0.02 3.00 71.24 0.21 0.23 16 6 O -0.55 -1.19 12.88 -148.98 -1.92 -3.11 16 7 Si 0.75 0.66 30.66 68.60 2.10 2.76 16 8 C -0.10 -0.38 9.15 22.59 0.21 -0.18 16 9 C -0.07 -0.29 6.89 40.32 0.28 -0.01 16 10 C 0.54 3.28 7.92 69.97 0.55 3.84 16 11 O -0.53 -6.33 16.68 19.43 0.32 -6.01 16 12 O -0.35 -0.28 7.66 -57.99 -0.44 -0.72 16 13 C 0.08 -0.20 5.32 71.98 0.38 0.18 16 14 C -0.10 0.64 4.02 -10.21 -0.04 0.60 16 15 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 16 C -0.12 0.99 7.39 31.12 0.23 1.22 16 17 C 0.14 -0.46 4.21 45.52 0.19 -0.27 16 18 H 0.11 -0.05 7.50 -2.39 -0.02 -0.06 16 19 N -0.69 0.64 5.36 -567.59 -3.04 -2.40 16 20 C 0.64 3.72 8.06 129.79 1.05 4.77 16 21 O -0.59 -6.47 11.50 19.82 0.23 -6.24 16 22 O -0.37 -1.87 9.94 -55.47 -0.55 -2.43 16 23 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 24 C -0.18 -0.49 8.37 71.98 0.60 0.12 16 25 C -0.14 0.31 8.85 71.98 0.64 0.94 16 26 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 27 C -0.15 0.62 7.45 31.18 0.23 0.85 16 28 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.11 -1.38 8.14 -2.39 -0.02 -1.40 16 30 H 0.10 -0.66 6.16 -2.39 -0.01 -0.67 16 31 H 0.20 -1.61 8.06 -2.91 -0.02 -1.63 16 32 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 33 H 0.38 -0.86 8.70 -74.06 -0.64 -1.50 16 34 H -0.30 -2.30 7.11 99.48 0.71 -1.59 16 35 H -0.30 -2.01 7.11 99.48 0.71 -1.30 16 36 H 0.15 0.57 6.40 -2.91 -0.02 0.56 16 37 H 0.07 -0.12 7.85 -2.39 -0.02 -0.14 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.10 -1.04 8.07 -2.39 -0.02 -1.06 16 40 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.42 -2.16 8.83 -92.71 -0.82 -2.98 16 42 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 45 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 48 H 0.06 0.52 5.88 -2.38 -0.01 0.50 16 49 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.09 -0.32 7.91 -2.39 -0.02 -0.34 16 Total: 0.00 -22.45 424.40 1.84 -20.61 By element: Atomic # 1 Polarization: -15.01 SS G_CDS: -0.48 Total: -15.49 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 7.30 Total: 14.19 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -4.73 Total: -3.58 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -2.36 Total: -18.50 kcal Atomic # 14 Polarization: 0.66 SS G_CDS: 2.10 Total: 2.76 kcal Total: -22.45 1.84 -20.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_15734238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.252 kcal (2) G-P(sol) polarization free energy of solvation -22.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds