Wall clock time and date at job start Sat Mar 6 2021 02:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34959 * 125.63264 * 2 1 4 4 C 1.35483 * 108.98468 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.07805 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47410 * 65.00062 * 5 4 3 7 7 Si 1.86310 * 109.46971 * 185.00068 * 5 4 3 8 8 C 1.39802 * 107.84307 * 359.97438 * 4 3 2 9 9 C 1.37695 * 125.63580 * 179.68886 * 2 1 3 10 10 C 1.46488 * 126.26331 * 0.02562 * 9 2 1 11 11 O 1.21626 * 120.00195 * 180.02562 * 10 9 2 12 12 O 1.34896 * 120.00390 * 359.97438 * 10 9 2 13 13 C 1.45199 * 117.00359 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46937 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46809 * 55.00433 * 14 13 12 16 16 C 1.52997 * 109.46864 * 175.00025 * 14 13 12 17 17 C 1.52999 * 109.47264 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46599 * 299.99890 * 17 16 14 19 19 H 1.09004 * 109.47663 * 299.99750 * 18 17 16 20 20 O 1.42903 * 109.46962 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47223 * 60.00084 * 18 17 16 22 22 C 1.52991 * 109.47206 * 295.00149 * 14 13 12 23 23 H 1.09001 * 109.47060 * 90.03296 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.02784 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.02867 * 1 2 3 26 26 H 1.07999 * 125.51011 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.47083 * 304.99468 * 5 4 3 28 28 H 0.96700 * 114.00200 * 179.97438 * 6 5 4 29 29 H 1.48499 * 109.99505 * 299.99810 * 7 5 4 30 30 H 1.48490 * 110.00034 * 61.31598 * 7 5 4 31 31 H 1.07995 * 126.51511 * 180.02562 * 8 4 3 32 32 H 1.09005 * 109.46906 * 300.00340 * 13 12 10 33 33 H 1.08996 * 109.47075 * 59.99928 * 13 12 10 34 34 H 1.09002 * 109.47095 * 300.00212 * 16 14 13 35 35 H 1.09005 * 109.47477 * 59.99707 * 16 14 13 36 36 H 1.09000 * 109.47546 * 59.99760 * 17 16 14 37 37 H 1.09003 * 109.47069 * 180.02562 * 17 16 14 38 38 H 0.96705 * 113.99688 * 179.97438 * 20 18 17 39 39 H 1.09000 * 109.47035 * 60.00061 * 21 18 17 40 40 H 1.09002 * 109.47095 * 179.97438 * 21 18 17 41 41 H 1.09004 * 109.47468 * 299.99880 * 22 14 13 42 42 H 1.08994 * 109.47679 * 60.00017 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5494 0.7088 0.0006 5 6 4.7485 1.6214 0.0013 6 8 4.7822 2.3628 1.2225 7 14 6.3025 0.6051 -0.1512 8 6 3.5785 -0.6890 0.0015 9 6 2.2673 -1.1191 0.0061 10 6 1.8122 -2.5114 0.0131 11 8 2.6244 -3.4167 0.0186 12 8 0.4922 -2.7897 0.0146 13 6 0.1140 -4.1915 0.0222 14 6 -1.4116 -4.3081 0.0222 15 1 -1.8183 -3.7527 -0.8230 16 6 -1.8105 -5.7804 -0.0955 17 6 -3.3360 -5.8970 -0.0962 18 6 -3.8921 -5.3206 1.2074 19 1 -3.4856 -5.8758 2.0528 20 8 -5.3170 -5.4289 1.2066 21 6 -3.4931 -3.8482 1.3251 22 6 -1.9671 -3.7318 1.3260 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3634 0.8902 0.5134 26 1 1.9022 2.1189 0.0004 27 1 4.6811 2.3106 -0.8405 28 1 5.5299 2.9720 1.2923 29 1 6.4061 -0.3387 0.9906 30 1 6.2943 -0.1462 -1.4320 31 1 4.4597 -1.3133 0.0026 32 1 0.5155 -4.6810 -0.8651 33 1 0.5154 -4.6713 0.9148 34 1 -1.4146 -6.1910 -1.0244 35 1 -1.4037 -6.3358 0.7496 36 1 -3.7426 -5.3418 -0.9415 37 1 -3.6202 -6.9460 -0.1796 38 1 -5.7382 -5.0824 2.0051 39 1 -3.8997 -3.2930 0.4798 40 1 -3.8897 -3.4375 2.2536 41 1 -1.5604 -4.2871 2.1712 42 1 -1.6830 -2.6829 1.4099 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_16737258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:25:07 Heat of formation + Delta-G solvation = -128.447504 kcal Electronic energy + Delta-G solvation = -24261.212945 eV Core-core repulsion = 20594.312369 eV Total energy + Delta-G solvation = -3666.900576 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.82405 -41.32259 -40.06204 -37.94519 -37.64753 -36.63823 -34.28885 -32.18698 -31.88045 -31.03575 -28.67005 -27.08825 -25.70093 -24.27999 -23.80208 -22.32000 -21.36390 -21.14745 -20.79576 -18.74827 -18.31312 -18.25661 -18.17080 -17.79257 -16.88547 -16.52266 -16.23509 -15.73010 -15.55990 -15.45783 -15.09366 -15.02421 -14.74908 -14.37809 -14.20273 -14.11135 -13.76196 -13.51888 -13.40206 -13.28224 -13.25638 -13.01932 -12.65162 -12.51171 -12.23943 -12.16027 -12.01508 -11.89459 -11.73616 -11.61575 -11.15229 -10.75447 -10.25626 -9.95505 -9.51057 -4.97094 -0.08928 1.24985 1.28431 1.41058 1.66794 1.68525 1.77275 2.08836 3.14968 3.35225 3.55331 3.61017 3.64490 3.67875 3.76248 3.97049 3.97469 4.05594 4.08999 4.20670 4.21968 4.27369 4.28992 4.35167 4.40989 4.42372 4.46928 4.53153 4.61954 4.71857 4.76571 4.88321 4.91172 4.98277 5.02794 5.08804 5.10950 5.12654 5.25414 5.34535 5.38522 5.62344 6.01004 6.43766 6.83222 7.03248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.408 5.408 3 C 0.085 3.915 4 C -0.199 4.199 5 C -0.028 4.028 6 O -0.564 6.564 7 Si 0.770 3.230 8 C -0.125 4.125 9 C -0.066 4.066 10 C 0.540 3.460 11 O -0.538 6.538 12 O -0.345 6.345 13 C 0.068 3.932 14 C -0.079 4.079 15 H 0.088 0.912 16 C -0.107 4.107 17 C -0.111 4.111 18 C 0.099 3.901 19 H 0.059 0.941 20 O -0.590 6.590 21 C -0.144 4.144 22 C -0.110 4.110 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.215 0.785 27 H 0.101 0.899 28 H 0.403 0.597 29 H -0.312 1.312 30 H -0.301 1.301 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 6.781 0.177 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.080 5.080 3 C -0.054 4.054 4 C -0.204 4.204 5 C -0.140 4.140 6 O -0.374 6.374 7 Si 0.679 3.321 8 C -0.151 4.151 9 C -0.176 4.176 10 C 0.388 3.612 11 O -0.428 6.428 12 O -0.262 6.262 13 C -0.005 4.005 14 C -0.097 4.097 15 H 0.107 0.893 16 C -0.144 4.144 17 C -0.149 4.149 18 C 0.041 3.959 19 H 0.077 0.923 20 O -0.398 6.398 21 C -0.181 4.181 22 C -0.147 4.147 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.137 0.863 26 H 0.232 0.768 27 H 0.119 0.881 28 H 0.254 0.746 29 H -0.241 1.241 30 H -0.229 1.229 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.817 5.012 -0.370 5.761 hybrid contribution -0.296 -0.531 0.473 0.770 sum -3.113 4.481 0.103 5.457 Atomic orbital electron populations 1.22687 0.73212 1.06771 1.05635 1.44211 1.08394 1.04331 1.51087 1.22404 0.88987 0.93038 1.00975 1.19131 0.95217 0.92015 1.14030 1.23853 1.01401 0.98354 0.90387 1.86435 1.54102 1.59432 1.37459 0.94984 0.81193 0.80705 0.75242 1.21180 0.94422 0.95593 1.03943 1.19179 0.90672 0.84653 1.23119 1.19864 0.81194 0.87784 0.72397 1.90901 1.55908 1.47514 1.48508 1.86558 1.23883 1.31677 1.84032 1.23356 0.96740 0.77525 1.02883 1.21213 0.90470 0.97791 1.00224 0.89329 1.21445 0.94909 0.94476 1.03606 1.21436 0.94715 1.01649 0.97067 1.21912 0.80511 0.95410 0.98104 0.92330 1.86485 1.20113 1.86159 1.47071 1.22202 0.96085 0.96710 1.03152 1.21530 0.94823 1.01836 0.96539 0.88702 0.88499 0.86275 0.76835 0.88078 0.74632 1.24071 1.22909 0.85583 0.91065 0.91163 0.90213 0.90795 0.91492 0.91329 0.75682 0.91316 0.90471 0.91642 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.33 10.57 127.77 1.35 1.02 16 2 N -0.41 -0.80 3.15 -534.84 -1.68 -2.48 16 3 C 0.09 0.05 11.26 83.57 0.94 0.99 16 4 C -0.20 -1.10 5.43 -20.12 -0.11 -1.21 16 5 C -0.03 0.01 2.99 71.24 0.21 0.22 16 6 O -0.56 0.52 12.86 -148.98 -1.92 -1.39 16 7 Si 0.77 1.22 30.66 68.60 2.10 3.32 16 8 C -0.12 -1.41 9.15 22.59 0.21 -1.20 16 9 C -0.07 -0.62 6.88 40.32 0.28 -0.34 16 10 C 0.54 5.85 7.92 69.97 0.55 6.41 16 11 O -0.54 -9.39 16.68 19.42 0.32 -9.07 16 12 O -0.34 -1.44 7.19 -58.11 -0.42 -1.86 16 13 C 0.07 0.11 4.85 71.98 0.35 0.45 16 14 C -0.08 0.22 2.43 -10.80 -0.03 0.19 16 15 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 16 C -0.11 0.34 5.20 30.59 0.16 0.49 16 17 C -0.11 0.11 5.57 30.59 0.17 0.28 16 18 C 0.10 -0.14 3.47 30.59 0.11 -0.04 16 19 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 20 O -0.59 -0.72 13.32 -148.98 -1.98 -2.70 16 21 C -0.14 0.57 5.55 30.61 0.17 0.74 16 22 C -0.11 0.41 5.11 30.61 0.16 0.57 16 23 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 24 H 0.10 -0.46 6.13 -2.38 -0.01 -0.48 16 25 H 0.12 -1.35 8.14 -2.39 -0.02 -1.37 16 26 H 0.22 -1.57 8.06 -2.91 -0.02 -1.59 16 27 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 28 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 29 H -0.31 -3.53 7.11 99.48 0.71 -2.82 16 30 H -0.30 -2.61 7.11 99.48 0.71 -1.90 16 31 H 0.13 1.81 6.40 -2.91 -0.02 1.79 16 32 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 36 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.39 -2.60 9.08 -74.05 -0.67 -3.28 16 39 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.07 -0.29 7.82 -2.39 -0.02 -0.31 16 Total: 0.00 -24.54 344.47 0.69 -23.85 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -0.25 Total: -18.24 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.52 Total: 8.58 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -1.68 Total: -2.48 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -3.99 Total: -15.03 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: 2.10 Total: 3.32 kcal Total: -24.54 0.69 -23.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_16737258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.598 kcal (2) G-P(sol) polarization free energy of solvation -24.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds