Wall clock time and date at job start Sat Mar 6 2021 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00165 * 2 1 4 4 C 1.53004 * 112.84677 * 66.01899 * 3 2 1 5 5 F 1.39903 * 109.47050 * 283.56639 * 4 3 2 6 6 F 1.39901 * 109.47262 * 43.56556 * 4 3 2 7 7 F 1.39899 * 109.46998 * 163.56705 * 4 3 2 8 8 C 1.53775 * 113.61375 * 294.82494 * 3 2 1 9 9 C 1.53787 * 87.08133 * 270.79458 * 8 3 2 10 10 H 1.08994 * 113.62003 * 219.93825 * 9 8 3 11 11 C 1.53002 * 113.61075 * 89.11615 * 9 8 3 12 12 O 1.45199 * 109.46841 * 175.00570 * 11 9 8 13 13 C 1.34892 * 116.99591 * 180.02562 * 12 11 9 14 14 O 1.21618 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.46496 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.37986 * 126.26503 * 180.15485 * 15 13 12 17 17 C 1.39799 * 106.96844 * 180.25380 * 16 15 13 18 18 C 1.50699 * 126.08068 * 179.72627 * 17 16 15 19 19 O 1.42903 * 109.47387 * 120.03893 * 18 17 16 20 20 Si 1.86296 * 109.47115 * 0.03688 * 18 17 16 21 21 C 1.35493 * 107.84360 * 359.75729 * 17 16 15 22 22 N 1.34960 * 108.98122 * 0.02562 * 21 17 16 23 23 C 1.46499 * 125.63325 * 179.97438 * 22 21 17 24 24 C 1.53775 * 113.69274 * 197.28480 * 3 2 1 25 25 H 1.09000 * 109.47203 * 302.47981 * 1 2 3 26 26 H 1.08998 * 109.47178 * 62.48333 * 1 2 3 27 27 H 1.09004 * 109.47080 * 182.47899 * 1 2 3 28 28 H 1.09008 * 113.61535 * 156.25407 * 8 3 2 29 29 H 1.09000 * 113.69261 * 25.35464 * 8 3 2 30 30 H 1.09001 * 109.46939 * 55.00288 * 11 9 8 31 31 H 1.09005 * 109.46900 * 295.00137 * 11 9 8 32 32 H 1.08001 * 126.51927 * 0.02562 * 16 15 13 33 33 H 1.09000 * 109.47214 * 240.03505 * 18 17 16 34 34 H 0.96697 * 114.00207 * 179.97438 * 19 18 17 35 35 H 1.48497 * 110.00072 * 60.00399 * 20 18 17 36 36 H 1.48507 * 109.99974 * 181.32097 * 20 18 17 37 37 H 1.07994 * 125.50698 * 180.02562 * 21 17 16 38 38 H 1.09001 * 109.47270 * 90.02714 * 23 22 21 39 39 H 1.09003 * 109.47104 * 330.02682 * 23 22 21 40 40 H 1.09003 * 109.47348 * 210.02727 * 23 22 21 41 41 H 1.09007 * 113.61295 * 334.57846 * 24 3 2 42 42 H 1.08999 * 113.61761 * 203.67590 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7284 2.0812 1.2883 5 9 0.4117 2.5536 1.2696 6 9 1.9052 1.2366 2.3895 7 9 2.6105 3.1628 1.3838 8 6 1.7204 2.1088 -1.2788 9 6 2.9973 1.4845 -1.8662 10 1 3.5925 2.1814 -2.4561 11 6 2.7554 0.1548 -2.5832 12 8 3.9904 -0.2934 -3.2013 13 6 3.9482 -1.4590 -3.8790 14 8 2.9070 -2.0834 -3.9505 15 6 5.1564 -1.9726 -4.5289 16 6 5.2589 -3.1422 -5.2540 17 6 6.5855 -3.2409 -5.6837 18 6 7.1710 -4.3596 -6.5064 19 8 7.6835 -3.8319 -7.7316 20 14 5.8468 -5.6164 -6.8773 21 6 7.2516 -2.1525 -5.2282 22 7 6.3972 -1.3753 -4.5300 23 6 6.7352 -0.1084 -3.8767 24 6 3.4899 1.3230 -0.4184 25 1 -0.3633 0.5519 0.8669 26 1 -0.3633 0.4748 -0.9114 27 1 -0.3633 -1.0267 0.0445 28 1 1.7858 3.1881 -1.1407 29 1 0.8087 1.8021 -1.7915 30 1 1.9929 0.2892 -3.3505 31 1 2.4184 -0.5905 -1.8627 32 1 4.4659 -3.8490 -5.4491 33 1 7.9784 -4.8357 -5.9501 34 1 8.0769 -4.4975 -8.3124 35 1 4.7403 -4.9797 -7.6357 36 1 6.4188 -6.7406 -7.6612 37 1 8.2971 -1.9410 -5.3967 38 1 6.5776 0.7138 -4.5747 39 1 7.7801 -0.1268 -3.5669 40 1 6.0994 0.0305 -3.0023 41 1 4.0066 0.3808 -0.2355 42 1 4.0390 2.1874 -0.0451 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_17321610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:00:26 Heat of formation + Delta-G solvation = -215.221089 kcal Electronic energy + Delta-G solvation = -32030.313392 eV Core-core repulsion = 26951.288104 eV Total energy + Delta-G solvation = -5079.025288 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.122 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -51.26403 -48.79633 -48.73372 -42.65782 -41.64448 -40.72988 -37.81019 -37.80962 -36.90605 -34.16450 -31.41212 -30.44478 -28.58971 -28.22301 -27.47134 -26.78968 -25.71936 -24.21977 -23.26163 -21.19659 -20.98678 -20.56490 -19.77791 -19.55034 -19.25054 -18.62459 -18.40657 -18.05510 -17.65306 -17.19997 -16.68674 -16.47472 -16.19137 -15.90258 -15.70425 -15.65980 -15.59694 -15.35803 -15.19378 -15.05118 -14.93495 -14.89513 -14.71035 -14.49696 -14.24876 -14.03167 -13.96287 -13.42650 -13.34166 -13.24352 -13.14291 -13.01820 -12.76334 -12.51757 -12.39742 -12.07801 -11.96125 -11.84527 -11.71481 -11.61622 -10.81604 -10.42014 -9.77932 -9.34794 -4.85845 0.11003 1.32771 1.37007 1.52583 1.54319 1.61868 1.83276 1.96711 2.02932 2.08013 2.55833 2.62041 2.87516 3.24823 3.28751 3.42903 3.54360 3.61376 3.75983 3.86382 4.09462 4.20767 4.21021 4.23308 4.28032 4.35088 4.39148 4.45348 4.46703 4.50488 4.58869 4.61179 4.68095 4.75410 4.77390 4.81697 4.84916 5.01334 5.06280 5.25917 5.54748 5.69929 5.80511 6.14615 6.60871 6.71314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.031 3.969 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.188 7.188 7 F -0.174 7.174 8 C -0.136 4.136 9 C -0.090 4.090 10 H 0.127 0.873 11 C 0.076 3.924 12 O -0.348 6.348 13 C 0.541 3.459 14 O -0.532 6.532 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.191 4.191 18 C -0.034 4.034 19 O -0.558 6.558 20 Si 0.742 3.258 21 C 0.076 3.924 22 N -0.411 5.411 23 C 0.056 3.944 24 C -0.110 4.110 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.394 0.606 35 H -0.311 1.311 36 H -0.282 1.282 37 H 0.203 0.797 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 2.594 0.572 5.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.012 4.012 4 C 0.379 3.621 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.173 4.173 9 C -0.108 4.108 10 H 0.145 0.855 11 C 0.003 3.997 12 O -0.265 6.265 13 C 0.388 3.612 14 O -0.422 6.422 15 C -0.178 4.178 16 C -0.130 4.130 17 C -0.196 4.196 18 C -0.145 4.145 19 O -0.368 6.368 20 Si 0.649 3.351 21 C -0.063 4.063 22 N -0.084 5.084 23 C -0.083 4.083 24 C -0.147 4.147 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.118 0.882 34 H 0.244 0.756 35 H -0.240 1.240 36 H -0.209 1.209 37 H 0.220 0.780 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.771 2.783 0.478 4.711 hybrid contribution -0.191 0.231 -0.497 0.580 sum 3.580 3.014 -0.019 4.680 Atomic orbital electron populations 1.23260 0.78837 1.05042 1.01875 1.88080 1.21994 1.22657 1.93844 1.24264 1.01011 0.86212 0.89686 1.21501 0.74119 0.78702 0.87793 1.93177 1.37270 1.89387 1.96844 1.93190 1.95005 1.71106 1.57672 1.93172 1.68779 1.56993 1.96599 1.23659 0.99776 1.01710 0.92204 1.22036 0.98121 0.95375 0.95234 0.85529 1.23115 0.83520 0.96332 0.96768 1.86522 1.39468 1.37297 1.63167 1.19841 0.86930 0.78856 0.75535 1.90904 1.32134 1.59205 1.59939 1.19229 0.85312 0.99198 1.14100 1.21306 0.97113 0.95798 0.98801 1.18876 0.93470 1.00005 1.07287 1.23983 1.05072 0.99402 0.86066 1.86536 1.79596 1.39265 1.31423 0.94246 0.76623 0.76081 0.88103 1.22267 0.97532 0.90953 0.95579 1.44169 1.06819 1.18851 1.38537 1.22637 1.04869 0.81529 0.99257 1.23361 0.90289 1.06045 0.94995 0.93282 0.91372 0.87387 0.85299 0.88120 0.90721 0.90212 0.83202 0.88188 0.75625 1.23955 1.20873 0.78012 0.89243 0.86633 0.88106 0.88971 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.50 8.36 -148.98 -1.25 -1.75 16 3 C 0.03 -0.06 0.85 -10.27 -0.01 -0.06 16 4 C 0.43 0.66 2.51 71.98 0.18 0.85 16 5 F -0.19 -0.46 15.24 44.97 0.69 0.23 16 6 F -0.19 -1.11 17.09 44.97 0.77 -0.34 16 7 F -0.17 -0.12 15.82 44.97 0.71 0.59 16 8 C -0.14 0.88 6.52 31.12 0.20 1.08 16 9 C -0.09 0.56 4.21 -10.26 -0.04 0.52 16 10 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 11 C 0.08 -0.04 5.06 71.98 0.36 0.33 16 12 O -0.35 -0.60 7.65 -58.07 -0.44 -1.05 16 13 C 0.54 4.13 7.92 69.97 0.55 4.68 16 14 O -0.53 -7.28 16.68 19.45 0.32 -6.95 16 15 C -0.07 -0.40 6.88 40.32 0.28 -0.13 16 16 C -0.10 -0.65 9.14 22.59 0.21 -0.44 16 17 C -0.19 -0.55 5.44 -20.12 -0.11 -0.66 16 18 C -0.03 0.01 2.99 71.24 0.21 0.22 16 19 O -0.56 -0.86 12.85 -148.98 -1.91 -2.77 16 20 Si 0.74 0.93 30.64 68.60 2.10 3.03 16 21 C 0.08 -0.05 11.25 83.58 0.94 0.89 16 22 N -0.41 -0.01 3.15 -534.84 -1.68 -1.69 16 23 C 0.06 -0.41 10.56 127.77 1.35 0.94 16 24 C -0.11 0.56 6.89 31.12 0.21 0.77 16 25 H 0.05 -0.03 6.25 -2.39 -0.01 -0.04 16 26 H 0.07 -0.31 6.76 -2.39 -0.02 -0.33 16 27 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.13 -1.19 8.06 -2.38 -0.02 -1.21 16 29 H 0.10 -0.72 6.70 -2.39 -0.02 -0.73 16 30 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.08 0.23 6.12 -2.38 -0.01 0.21 16 32 H 0.15 0.92 6.38 -2.91 -0.02 0.90 16 33 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 34 H 0.39 -2.48 8.74 -74.06 -0.65 -3.12 16 35 H -0.31 -3.32 7.11 99.48 0.71 -2.62 16 36 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 37 H 0.20 -1.39 8.06 -2.91 -0.02 -1.41 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 40 H 0.10 -0.69 6.13 -2.39 -0.01 -0.71 16 41 H 0.09 -0.32 8.10 -2.38 -0.02 -0.33 16 42 H 0.13 -1.07 7.01 -2.39 -0.02 -1.09 16 Total: 0.00 -21.26 359.34 5.31 -15.96 By element: Atomic # 1 Polarization: -15.89 SS G_CDS: 0.48 Total: -15.41 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.53 Total: 10.16 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -1.68 Total: -1.69 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -3.28 Total: -12.52 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 2.17 Total: 0.48 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: 2.10 Total: 3.03 kcal Total: -21.26 5.31 -15.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_17321610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.263 kcal (2) G-P(sol) polarization free energy of solvation -21.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds