Wall clock time and date at job start Sat Mar 6 2021 01:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 125.63452 * 2 1 4 4 C 1.35485 * 108.98509 * 180.26773 * 3 2 1 5 5 C 1.50702 * 126.08133 * 179.76370 * 4 3 2 6 6 O 1.42898 * 109.47155 * 299.97973 * 5 4 3 7 7 Si 1.86293 * 109.47270 * 179.97438 * 5 4 3 8 8 H 1.48503 * 109.47316 * 60.00018 * 7 5 4 9 9 H 1.48500 * 109.47428 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47257 * 300.00366 * 7 5 4 11 11 C 1.39793 * 107.84315 * 359.76312 * 4 3 2 12 12 C 1.37700 * 125.63520 * 179.86594 * 2 1 3 13 13 C 1.46490 * 126.26021 * 0.02562 * 12 2 1 14 14 O 1.21619 * 119.99785 * 179.97438 * 13 12 2 15 15 O 1.34894 * 120.00235 * 359.71192 * 13 12 2 16 16 C 1.45196 * 116.99895 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47396 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.99552 * 269.72822 * 17 16 15 19 19 C 1.38234 * 119.99784 * 179.76272 * 18 17 16 20 20 C 1.38237 * 119.99733 * 0.50289 * 19 18 17 21 21 Si 1.86807 * 119.99755 * 179.72588 * 20 19 18 22 22 C 1.86298 * 109.46908 * 270.02483 * 21 20 19 23 23 C 1.86296 * 109.47191 * 30.02080 * 21 20 19 24 24 C 1.86296 * 109.47011 * 150.02533 * 21 20 19 25 25 C 1.38233 * 120.00370 * 359.74887 * 20 19 18 26 26 C 1.38229 * 120.00313 * 89.99381 * 17 16 15 27 27 H 1.09004 * 109.47338 * 270.13388 * 1 2 3 28 28 H 1.09000 * 109.47059 * 30.13044 * 1 2 3 29 29 H 1.08998 * 109.47465 * 150.13250 * 1 2 3 30 30 H 1.08001 * 125.51134 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46764 * 59.97587 * 5 4 3 32 32 H 0.96703 * 113.99793 * 299.99008 * 6 5 4 33 33 H 1.08003 * 126.52124 * 179.97438 * 11 4 3 34 34 H 1.09012 * 109.47257 * 299.99859 * 16 15 13 35 35 H 1.08996 * 109.47465 * 59.99915 * 16 15 13 36 36 H 1.08001 * 120.00195 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.00144 * 180.22961 * 19 18 17 38 38 H 1.08996 * 109.47396 * 59.99837 * 22 21 20 39 39 H 1.08995 * 109.47314 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47405 * 299.99891 * 22 21 20 41 41 H 1.09007 * 109.46910 * 59.99738 * 23 21 20 42 42 H 1.08996 * 109.47277 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47455 * 300.00183 * 23 21 20 44 44 H 1.08997 * 109.47551 * 59.99939 * 24 21 20 45 45 H 1.08996 * 109.47039 * 180.02562 * 24 21 20 46 46 H 1.09002 * 109.46935 * 299.99598 * 24 21 20 47 47 H 1.07997 * 120.00018 * 179.97438 * 25 20 19 48 48 H 1.08003 * 120.00093 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5493 0.7087 -0.0060 5 6 4.7486 1.6213 -0.0131 6 8 4.7141 2.4440 -1.1809 7 14 6.3064 0.5996 -0.0188 8 1 6.3307 -0.2592 -1.2301 9 1 7.4881 1.4988 -0.0252 10 1 6.3421 -0.2554 1.1949 11 6 3.5785 -0.6890 -0.0044 12 6 2.2673 -1.1191 0.0026 13 6 1.8121 -2.5115 0.0053 14 8 2.6242 -3.4168 0.0071 15 8 0.4921 -2.7896 0.0113 16 6 0.1138 -4.1914 0.0143 17 6 -1.3888 -4.3063 0.0203 18 6 -2.0728 -4.3634 1.2202 19 6 -3.4515 -4.4638 1.2258 20 6 -4.1453 -4.5177 0.0314 21 14 -6.0079 -4.6612 0.0389 22 6 -6.4920 -6.4601 0.0427 23 6 -6.6884 -3.8317 1.5619 24 6 -6.7004 -3.8349 -1.4804 25 6 -3.4610 -4.4659 -1.1685 26 6 -2.0826 -4.3602 -1.1740 27 1 -0.3634 0.0024 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8911 -0.5118 30 1 1.9023 2.1189 -0.0004 31 1 4.7307 2.2515 0.8760 32 1 4.7276 1.9488 -2.0114 33 1 4.4596 -1.3135 -0.0084 34 1 0.5114 -4.6770 -0.8771 35 1 0.5191 -4.6753 0.9029 36 1 -1.5303 -4.3261 2.1534 37 1 -3.9861 -4.5047 2.1632 38 1 -6.0868 -6.9436 0.9316 39 1 -7.5788 -6.5439 0.0476 40 1 -6.0939 -6.9455 -0.8483 41 1 -6.4050 -2.7791 1.5597 42 1 -7.7752 -3.9150 1.5660 43 1 -6.2832 -4.3152 2.4508 44 1 -6.3023 -4.3202 -2.3714 45 1 -7.7872 -3.9182 -1.4758 46 1 -6.4171 -2.7823 -1.4826 47 1 -4.0031 -4.5084 -2.1016 48 1 -1.5479 -4.3203 -2.1116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_10804114_9435856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:16:40 Heat of formation + Delta-G solvation = -89.273019 kcal Electronic energy + Delta-G solvation = -27344.110067 eV Core-core repulsion = 23488.242892 eV Total energy + Delta-G solvation = -3855.867175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.151 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65768 -41.08479 -39.96246 -37.72937 -37.44571 -34.14442 -33.12232 -31.98382 -30.93307 -29.65204 -28.66655 -28.51931 -28.47905 -27.51398 -25.75072 -24.14701 -23.57658 -22.14605 -21.12248 -21.07869 -19.07212 -18.24724 -17.60472 -17.51204 -17.38896 -16.57821 -16.44956 -15.93285 -15.86806 -15.65600 -15.60029 -14.85153 -14.67828 -14.47313 -14.31808 -14.29169 -14.20915 -14.07740 -14.06759 -13.87742 -13.72801 -13.49855 -13.34182 -13.33675 -13.26205 -13.17275 -13.11532 -12.74417 -12.25787 -12.14366 -12.00289 -11.76505 -11.68641 -11.64941 -11.11277 -10.98103 -10.92096 -10.36945 -9.88307 -9.80600 -9.78101 -9.34353 0.03408 0.19404 0.44482 1.28297 1.46517 1.52884 1.60542 1.62388 1.66713 1.76445 1.77289 1.94577 2.06497 2.08970 2.46558 2.86848 3.52380 3.56112 3.72315 3.74484 3.78569 3.96181 4.03481 4.11980 4.16266 4.17422 4.28267 4.39814 4.41405 4.52948 4.58915 4.63307 4.64351 4.68071 4.68722 4.69480 4.70335 4.70637 4.82160 4.89989 5.01181 5.05632 5.24452 5.34659 5.39300 5.42291 5.47670 5.52586 5.53250 5.57637 5.81999 6.00850 6.05827 6.66602 6.73476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.414 5.414 3 C 0.069 3.931 4 C -0.220 4.220 5 C -0.043 4.043 6 O -0.544 6.544 7 Si 0.949 3.051 8 H -0.252 1.252 9 H -0.255 1.255 10 H -0.251 1.251 11 C -0.097 4.097 12 C -0.045 4.045 13 C 0.538 3.462 14 O -0.497 6.497 15 O -0.354 6.354 16 C 0.109 3.891 17 C -0.091 4.091 18 C -0.106 4.106 19 C -0.091 4.091 20 C -0.360 4.360 21 Si 1.060 2.940 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.450 4.450 25 C -0.091 4.091 26 C -0.106 4.106 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.178 0.822 31 H 0.115 0.885 32 H 0.376 0.624 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.124 0.876 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 1.194 -0.132 5.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.088 5.088 3 C -0.069 4.069 4 C -0.226 4.226 5 C -0.155 4.155 6 O -0.349 6.349 7 Si 0.771 3.229 8 H -0.175 1.175 9 H -0.179 1.179 10 H -0.174 1.174 11 C -0.123 4.123 12 C -0.154 4.154 13 C 0.383 3.617 14 O -0.385 6.385 15 O -0.272 6.272 16 C 0.036 3.964 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.401 4.401 21 Si 1.252 2.748 22 C -0.557 4.557 23 C -0.558 4.558 24 C -0.558 4.558 25 C -0.109 4.109 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.195 0.805 31 H 0.132 0.868 32 H 0.223 0.777 33 H 0.169 0.831 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.142 0.858 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.693 0.784 0.315 4.768 hybrid contribution -0.271 -0.386 -0.322 0.571 sum -4.963 0.397 -0.007 4.979 Atomic orbital electron populations 1.22381 0.75425 1.05540 1.04434 1.44003 1.07178 1.05261 1.52322 1.21855 0.89836 0.91835 1.03391 1.19832 0.95022 0.93447 1.14255 1.24239 1.02286 0.97629 0.91306 1.86481 1.97134 1.35777 1.15494 0.85708 0.76545 0.78579 0.82037 1.17519 1.17920 1.17435 1.21235 0.94584 0.94351 1.02080 1.19263 0.90433 0.83941 1.21756 1.19752 0.80719 0.87905 0.73309 1.90931 1.54801 1.46340 1.46403 1.86650 1.25598 1.30355 1.84635 1.21889 0.91748 0.78928 1.03804 1.19477 0.93012 1.02504 0.94097 1.21169 0.94864 0.99179 0.97181 1.21090 0.93676 0.97829 0.98301 1.27502 1.17325 1.01143 0.94149 0.78178 0.61807 0.67471 0.67340 1.26128 1.05527 1.19409 1.04659 1.26138 1.06755 1.07808 1.15060 1.26136 1.06831 1.07782 1.15007 1.21089 0.93729 0.97835 0.98250 1.21166 0.94810 0.99245 0.97233 0.90030 0.89165 0.88055 0.80519 0.86763 0.77702 0.83065 0.89995 0.89973 0.86090 0.85826 0.91151 0.90975 0.91147 0.91063 0.90894 0.91155 0.91154 0.90895 0.91063 0.85823 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.13 10.55 59.85 0.63 0.50 16 2 N -0.41 -0.22 3.15 -120.41 -0.38 -0.60 16 3 C 0.07 -0.01 11.25 -17.16 -0.19 -0.20 16 4 C -0.22 -0.19 5.41 -105.02 -0.57 -0.76 16 5 C -0.04 0.01 3.00 36.01 0.11 0.11 16 6 O -0.54 -0.17 12.88 -35.23 -0.45 -0.62 16 7 Si 0.95 0.42 25.92 -169.99 -4.41 -3.99 16 8 H -0.25 -0.28 7.11 56.52 0.40 0.13 16 9 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 10 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 11 C -0.10 -0.24 9.14 -39.09 -0.36 -0.60 16 12 C -0.04 -0.12 6.89 -82.00 -0.56 -0.69 16 13 C 0.54 2.02 7.92 34.05 0.27 2.29 16 14 O -0.50 -3.12 16.68 -19.36 -0.32 -3.45 16 15 O -0.35 -0.71 7.64 -41.03 -0.31 -1.02 16 16 C 0.11 0.12 5.60 36.01 0.20 0.32 16 17 C -0.09 -0.06 5.52 -104.62 -0.58 -0.64 16 18 C -0.11 -0.03 9.70 -39.58 -0.38 -0.41 16 19 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 20 C -0.36 0.38 4.59 -39.58 -0.18 0.20 16 21 Si 1.06 -3.43 12.32 -169.99 -2.09 -5.53 16 22 C -0.45 0.91 8.65 101.05 0.87 1.79 16 23 C -0.45 1.12 8.53 101.05 0.86 1.98 16 24 C -0.45 1.12 8.53 101.05 0.86 1.99 16 25 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 26 C -0.11 -0.02 9.70 -39.58 -0.38 -0.41 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 29 H 0.10 -0.13 6.15 -51.93 -0.32 -0.45 16 30 H 0.18 -0.44 8.06 -52.49 -0.42 -0.87 16 31 H 0.11 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.38 -0.96 8.70 45.56 0.40 -0.56 16 33 H 0.15 0.34 6.38 -52.48 -0.34 0.01 16 34 H 0.08 0.07 8.08 -51.92 -0.42 -0.35 16 35 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 36 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 37 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 43 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 44 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 45 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 46 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 47 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 48 H 0.12 -0.11 8.06 -52.48 -0.42 -0.53 16 LS Contribution 405.27 15.07 6.11 6.11 Total: 0.00 -7.32 405.27 -8.89 -16.21 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -6.89 Total: -11.94 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.14 Total: 4.83 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -0.38 Total: -0.60 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -1.09 Total: -5.09 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: -6.50 Total: -9.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -7.32 -8.89 -16.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_9435856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.064 kcal (2) G-P(sol) polarization free energy of solvation -7.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds