Wall clock time and date at job start Sat Mar 6 2021 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 125.63452 * 2 1 4 4 C 1.35485 * 108.98509 * 180.26773 * 3 2 1 5 5 C 1.50702 * 126.08133 * 179.76370 * 4 3 2 6 6 O 1.42898 * 109.47155 * 299.97973 * 5 4 3 7 7 Si 1.86293 * 109.47270 * 179.97438 * 5 4 3 8 8 H 1.48503 * 109.47316 * 60.00018 * 7 5 4 9 9 H 1.48500 * 109.47428 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.47257 * 300.00366 * 7 5 4 11 11 C 1.39793 * 107.84315 * 359.76312 * 4 3 2 12 12 C 1.37700 * 125.63520 * 179.86594 * 2 1 3 13 13 C 1.46490 * 126.26021 * 0.02562 * 12 2 1 14 14 O 1.21619 * 119.99785 * 179.97438 * 13 12 2 15 15 O 1.34894 * 120.00235 * 359.71192 * 13 12 2 16 16 C 1.45196 * 116.99895 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47396 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.99552 * 269.72822 * 17 16 15 19 19 C 1.38234 * 119.99784 * 179.76272 * 18 17 16 20 20 C 1.38237 * 119.99733 * 0.50289 * 19 18 17 21 21 Si 1.86807 * 119.99755 * 179.72588 * 20 19 18 22 22 C 1.86298 * 109.46908 * 270.02483 * 21 20 19 23 23 C 1.86296 * 109.47191 * 30.02080 * 21 20 19 24 24 C 1.86296 * 109.47011 * 150.02533 * 21 20 19 25 25 C 1.38233 * 120.00370 * 359.74887 * 20 19 18 26 26 C 1.38229 * 120.00313 * 89.99381 * 17 16 15 27 27 H 1.09004 * 109.47338 * 270.13388 * 1 2 3 28 28 H 1.09000 * 109.47059 * 30.13044 * 1 2 3 29 29 H 1.08998 * 109.47465 * 150.13250 * 1 2 3 30 30 H 1.08001 * 125.51134 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46764 * 59.97587 * 5 4 3 32 32 H 0.96703 * 113.99793 * 299.99008 * 6 5 4 33 33 H 1.08003 * 126.52124 * 179.97438 * 11 4 3 34 34 H 1.09012 * 109.47257 * 299.99859 * 16 15 13 35 35 H 1.08996 * 109.47465 * 59.99915 * 16 15 13 36 36 H 1.08001 * 120.00195 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.00144 * 180.22961 * 19 18 17 38 38 H 1.08996 * 109.47396 * 59.99837 * 22 21 20 39 39 H 1.08995 * 109.47314 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47405 * 299.99891 * 22 21 20 41 41 H 1.09007 * 109.46910 * 59.99738 * 23 21 20 42 42 H 1.08996 * 109.47277 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47455 * 300.00183 * 23 21 20 44 44 H 1.08997 * 109.47551 * 59.99939 * 24 21 20 45 45 H 1.08996 * 109.47039 * 180.02562 * 24 21 20 46 46 H 1.09002 * 109.46935 * 299.99598 * 24 21 20 47 47 H 1.07997 * 120.00018 * 179.97438 * 25 20 19 48 48 H 1.08003 * 120.00093 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5493 0.7087 -0.0060 5 6 4.7486 1.6213 -0.0131 6 8 4.7141 2.4440 -1.1809 7 14 6.3064 0.5996 -0.0188 8 1 6.3307 -0.2592 -1.2301 9 1 7.4881 1.4988 -0.0252 10 1 6.3421 -0.2554 1.1949 11 6 3.5785 -0.6890 -0.0044 12 6 2.2673 -1.1191 0.0026 13 6 1.8121 -2.5115 0.0053 14 8 2.6242 -3.4168 0.0071 15 8 0.4921 -2.7896 0.0113 16 6 0.1138 -4.1914 0.0143 17 6 -1.3888 -4.3063 0.0203 18 6 -2.0728 -4.3634 1.2202 19 6 -3.4515 -4.4638 1.2258 20 6 -4.1453 -4.5177 0.0314 21 14 -6.0079 -4.6612 0.0389 22 6 -6.4920 -6.4601 0.0427 23 6 -6.6884 -3.8317 1.5619 24 6 -6.7004 -3.8349 -1.4804 25 6 -3.4610 -4.4659 -1.1685 26 6 -2.0826 -4.3602 -1.1740 27 1 -0.3634 0.0024 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8911 -0.5118 30 1 1.9023 2.1189 -0.0004 31 1 4.7307 2.2515 0.8760 32 1 4.7276 1.9488 -2.0114 33 1 4.4596 -1.3135 -0.0084 34 1 0.5114 -4.6770 -0.8771 35 1 0.5191 -4.6753 0.9029 36 1 -1.5303 -4.3261 2.1534 37 1 -3.9861 -4.5047 2.1632 38 1 -6.0868 -6.9436 0.9316 39 1 -7.5788 -6.5439 0.0476 40 1 -6.0939 -6.9455 -0.8483 41 1 -6.4050 -2.7791 1.5597 42 1 -7.7752 -3.9150 1.5660 43 1 -6.2832 -4.3152 2.4508 44 1 -6.3023 -4.3202 -2.3714 45 1 -7.7872 -3.9182 -1.4758 46 1 -6.4171 -2.7823 -1.4826 47 1 -4.0031 -4.5084 -2.1016 48 1 -1.5479 -4.3203 -2.1116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804114_9435856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:16:38 Heat of formation + Delta-G solvation = -80.365064 kcal Electronic energy + Delta-G solvation = -27343.723789 eV Core-core repulsion = 23488.242892 eV Total energy + Delta-G solvation = -3855.480897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.151 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.73522 -41.25443 -39.96643 -37.73441 -37.66958 -34.13634 -33.13594 -31.92259 -31.01847 -29.44482 -28.61262 -28.28888 -28.27216 -27.55098 -25.77443 -24.23853 -23.52096 -22.13758 -21.22091 -21.17028 -19.13663 -18.39806 -17.77893 -17.52800 -17.39184 -16.57358 -16.45528 -15.94705 -15.86948 -15.69136 -15.59069 -14.90006 -14.73186 -14.40530 -14.32607 -14.20998 -14.17607 -14.04650 -13.91250 -13.72462 -13.66120 -13.46135 -13.19822 -13.16484 -13.10842 -13.04135 -12.96317 -12.71845 -12.35389 -12.15058 -12.14450 -11.99735 -11.79557 -11.74644 -10.93022 -10.80398 -10.75502 -10.38677 -9.86291 -9.84523 -9.73439 -9.41471 0.01707 0.05712 0.48397 1.25359 1.41480 1.45020 1.52477 1.58590 1.76588 1.83211 1.88129 1.98750 2.02968 2.12077 2.66173 2.90911 3.45240 3.61966 3.69039 3.72247 3.84886 3.99405 4.09559 4.15991 4.17425 4.22580 4.32717 4.36846 4.50556 4.67272 4.67806 4.75306 4.78111 4.84355 4.84728 4.88942 4.90027 4.90321 4.90687 4.94347 4.96719 5.08937 5.12488 5.36769 5.48996 5.53364 5.55979 5.59685 5.68101 5.71340 5.73411 6.07590 6.09824 6.50118 6.80332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.411 5.411 3 C 0.084 3.916 4 C -0.228 4.228 5 C -0.029 4.029 6 O -0.552 6.552 7 Si 0.971 3.029 8 H -0.266 1.266 9 H -0.270 1.270 10 H -0.269 1.269 11 C -0.110 4.110 12 C -0.072 4.072 13 C 0.538 3.462 14 O -0.534 6.534 15 O -0.347 6.347 16 C 0.109 3.891 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.100 4.100 20 C -0.369 4.369 21 Si 1.131 2.869 22 C -0.466 4.466 23 C -0.463 4.463 24 C -0.462 4.462 25 C -0.100 4.100 26 C -0.119 4.119 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.209 0.791 31 H 0.130 0.870 32 H 0.387 0.613 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.142 0.858 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.070 2.665 -0.182 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.083 5.083 3 C -0.055 4.055 4 C -0.233 4.233 5 C -0.141 4.141 6 O -0.359 6.359 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.195 1.195 10 H -0.194 1.194 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.386 3.614 14 O -0.425 6.425 15 O -0.265 6.265 16 C 0.036 3.964 17 C -0.102 4.102 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.408 4.408 21 Si 1.318 2.682 22 C -0.572 4.572 23 C -0.570 4.570 24 C -0.570 4.570 25 C -0.118 4.118 26 C -0.137 4.137 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.226 0.774 31 H 0.148 0.852 32 H 0.236 0.764 33 H 0.160 0.840 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.159 0.841 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.456 2.247 0.255 6.841 hybrid contribution 0.261 -0.853 -0.319 0.948 sum -6.195 1.394 -0.064 6.350 Atomic orbital electron populations 1.22568 0.73879 1.06380 1.05217 1.44189 1.08100 1.04663 1.51386 1.22345 0.89297 0.92741 1.01094 1.19938 0.96034 0.92655 1.14680 1.24067 1.00813 0.97327 0.91928 1.86455 1.97002 1.36263 1.16149 0.85397 0.76745 0.77652 0.80428 1.18991 1.19455 1.19416 1.21354 0.94452 0.95404 1.02441 1.19228 0.91058 0.84128 1.23704 1.19998 0.80826 0.88186 0.72421 1.90899 1.55652 1.47447 1.48470 1.86665 1.24682 1.30901 1.84203 1.21943 0.92408 0.78497 1.03586 1.19486 0.92493 1.03550 0.94683 1.21352 0.95564 0.99512 0.97262 1.21388 0.93466 0.97522 0.99394 1.28074 1.18940 1.00046 0.93773 0.77117 0.59290 0.65682 0.66159 1.26326 1.05778 1.20728 1.04359 1.26282 1.07027 1.07945 1.15720 1.26277 1.07103 1.07921 1.15654 1.21390 0.93532 0.97502 0.99335 1.21352 0.95494 0.99516 0.97323 0.89253 0.86428 0.89096 0.77433 0.85241 0.76377 0.83997 0.90206 0.90259 0.85630 0.84111 0.91480 0.90711 0.91462 0.91130 0.90708 0.90955 0.90933 0.90710 0.91122 0.84075 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.30 10.55 127.77 1.35 1.05 16 2 N -0.41 -0.22 3.15 -534.85 -1.68 -1.90 16 3 C 0.08 -0.15 11.25 83.58 0.94 0.79 16 4 C -0.23 -0.31 5.41 -20.12 -0.11 -0.42 16 5 C -0.03 0.03 3.00 71.24 0.21 0.24 16 6 O -0.55 0.31 12.88 -148.98 -1.92 -1.61 16 7 Si 0.97 1.88 25.92 68.60 1.78 3.66 16 8 H -0.27 -1.04 7.11 99.48 0.71 -0.33 16 9 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 10 H -0.27 -1.30 7.11 99.48 0.71 -0.59 16 11 C -0.11 -0.69 9.14 22.59 0.21 -0.48 16 12 C -0.07 -0.48 6.89 40.32 0.28 -0.20 16 13 C 0.54 5.17 7.92 69.97 0.55 5.72 16 14 O -0.53 -8.24 16.68 19.45 0.32 -7.92 16 15 O -0.35 -1.95 7.64 -58.09 -0.44 -2.39 16 16 C 0.11 0.44 5.60 71.24 0.40 0.84 16 17 C -0.10 -0.26 5.52 -19.87 -0.11 -0.37 16 18 C -0.12 -0.15 9.70 22.27 0.22 0.07 16 19 C -0.10 0.12 9.29 22.27 0.21 0.33 16 20 C -0.37 0.94 4.59 22.27 0.10 1.04 16 21 Si 1.13 -8.34 12.32 68.60 0.85 -7.49 16 22 C -0.47 2.13 8.65 113.37 0.98 3.11 16 23 C -0.46 2.76 8.53 113.37 0.97 3.72 16 24 C -0.46 2.78 8.53 113.37 0.97 3.75 16 25 C -0.10 0.13 9.29 22.27 0.21 0.34 16 26 C -0.12 -0.13 9.70 22.27 0.22 0.08 16 27 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 29 H 0.09 -0.23 6.15 -2.39 -0.01 -0.25 16 30 H 0.21 -1.73 8.06 -2.91 -0.02 -1.75 16 31 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.39 -2.27 8.70 -74.06 -0.64 -2.92 16 33 H 0.14 1.01 6.38 -2.91 -0.02 0.99 16 34 H 0.08 0.32 8.08 -2.38 -0.02 0.30 16 35 H 0.08 0.33 8.08 -2.39 -0.02 0.32 16 36 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.14 -0.75 7.43 -2.91 -0.02 -0.78 16 38 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 39 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 40 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 41 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 42 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 43 H 0.07 -0.44 7.69 -2.38 -0.02 -0.46 16 44 H 0.07 -0.45 7.69 -2.39 -0.02 -0.47 16 45 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 46 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 47 H 0.14 -0.78 7.43 -2.91 -0.02 -0.80 16 48 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 Total: 0.00 -18.04 405.27 7.55 -10.49 By element: Atomic # 1 Polarization: -13.50 SS G_CDS: 1.06 Total: -12.44 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.58 Total: 19.61 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -1.68 Total: -1.90 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -2.04 Total: -11.92 kcal Atomic # 14 Polarization: -6.46 SS G_CDS: 2.62 Total: -3.84 kcal Total: -18.04 7.55 -10.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804114_9435856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.880 kcal (2) G-P(sol) polarization free energy of solvation -18.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds