Wall clock time and date at job start Sat Mar 6 2021 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37694 * 125.63660 * 2 1 4 4 C 1.46498 * 126.26245 * 0.02562 * 3 2 1 5 5 O 1.21623 * 120.00145 * 179.71853 * 4 3 2 6 6 O 1.34893 * 119.99813 * 359.44273 * 4 3 2 7 7 C 1.45196 * 117.00151 * 180.26947 * 6 4 3 8 8 C 1.52994 * 109.47253 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.85169 * 316.19595 * 8 7 6 10 10 C 1.53785 * 113.61444 * 87.50720 * 8 7 6 11 11 C 1.53786 * 87.07958 * 139.98052 * 10 8 7 12 12 H 1.08999 * 113.61280 * 89.12154 * 11 10 8 13 13 O 1.42904 * 113.68604 * 220.00490 * 11 10 8 14 14 C 1.53778 * 87.08275 * 334.56726 * 11 10 8 15 15 C 1.37991 * 107.47630 * 179.75349 * 3 2 1 16 16 C 1.39793 * 106.96920 * 0.23696 * 15 3 2 17 17 C 1.34959 * 125.63728 * 180.17347 * 2 1 3 18 18 C 1.50700 * 125.50749 * 0.02562 * 17 2 1 19 19 O 1.42897 * 109.47151 * 330.26725 * 18 17 2 20 20 Si 1.86295 * 109.47396 * 210.26219 * 18 17 2 21 21 H 1.08998 * 109.46780 * 90.02987 * 1 2 3 22 22 H 1.08998 * 109.47393 * 210.02652 * 1 2 3 23 23 H 1.09000 * 109.47239 * 330.03338 * 1 2 3 24 24 H 1.08998 * 109.47461 * 300.00565 * 7 6 4 25 25 H 1.09010 * 109.46796 * 60.00354 * 7 6 4 26 26 H 1.08992 * 113.61234 * 254.53026 * 10 8 7 27 27 H 1.09005 * 113.61093 * 25.43069 * 10 8 7 28 28 H 0.96694 * 114.00460 * 277.53900 * 13 11 10 29 29 H 1.09000 * 113.61749 * 270.88447 * 14 11 10 30 30 H 1.09001 * 113.69148 * 139.99245 * 14 11 10 31 31 H 1.08002 * 126.51825 * 180.26871 * 15 3 2 32 32 H 1.08001 * 126.08248 * 179.97438 * 16 15 3 33 33 H 1.09001 * 109.46952 * 90.26616 * 18 17 2 34 34 H 0.96705 * 113.99941 * 299.99020 * 19 18 17 35 35 H 1.48506 * 109.99883 * 58.68443 * 20 18 17 36 36 H 1.48501 * 110.00165 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2673 1.1191 0.0000 4 6 1.8121 2.5116 0.0005 5 8 2.6243 3.4168 0.0056 6 8 0.4922 2.7897 -0.0103 7 6 0.1139 4.1915 -0.0151 8 6 -1.4115 4.3080 -0.0267 9 1 -1.8836 3.6165 -0.7245 10 6 -2.0410 4.2959 1.3764 11 6 -3.0035 5.3823 0.8681 12 1 -3.9119 4.9840 0.4161 13 8 -3.2649 6.4110 1.8250 14 6 -1.9179 5.7544 -0.1555 15 6 3.5784 0.6890 0.0057 16 6 3.5494 -0.7086 0.0035 17 6 2.2513 -1.0968 -0.0033 18 6 1.7643 -2.5230 -0.0082 19 8 0.5030 -2.5978 0.6593 20 14 2.9989 -3.6039 0.8739 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3634 0.8903 0.5133 24 1 0.5083 4.6774 0.8773 25 1 0.5224 4.6750 -0.9027 26 1 -2.5348 3.3567 1.6252 27 1 -1.3670 4.6416 2.1603 28 1 -3.9468 6.1828 2.4715 29 1 -1.2104 6.4989 0.2096 30 1 -2.3111 5.9930 -1.1437 31 1 4.4596 1.3134 0.0112 32 1 4.4088 -1.3627 0.0063 33 1 1.6518 -2.8649 -1.0370 34 1 0.5283 -2.3082 1.5816 35 1 3.1851 -3.1285 2.2684 36 1 2.5305 -5.0131 0.8754 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_11354868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:06:30 Heat of formation + Delta-G solvation = -83.856182 kcal Electronic energy + Delta-G solvation = -20648.064424 eV Core-core repulsion = 17294.172711 eV Total energy + Delta-G solvation = -3353.891713 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76762 -41.30195 -40.21001 -38.04088 -37.64198 -36.04110 -33.96881 -31.74190 -29.78382 -27.61249 -26.98676 -26.79245 -24.17283 -23.08109 -21.52674 -21.06868 -20.45770 -19.00158 -18.67684 -18.47118 -17.76546 -17.73122 -16.77717 -16.41666 -16.24118 -15.71532 -15.47066 -15.12553 -15.01750 -14.68746 -14.36759 -14.09528 -13.89842 -13.74647 -13.53616 -13.23620 -13.01063 -12.88153 -12.46330 -12.36847 -12.24557 -12.01122 -11.90137 -11.73009 -11.27775 -10.90629 -10.79280 -9.83741 -9.28196 -4.84541 0.02194 1.12972 1.37346 1.53891 1.71194 1.82047 2.00873 2.07549 3.13033 3.18519 3.34202 3.43383 3.47986 3.59431 3.78523 3.89156 3.95966 4.09846 4.14723 4.23889 4.34142 4.38260 4.49919 4.52942 4.59751 4.69404 4.73181 4.77880 4.91023 4.94613 5.04025 5.09310 5.20117 5.33265 5.59122 5.81860 6.06231 6.29459 6.54626 6.84422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.403 5.403 3 C -0.080 4.080 4 C 0.537 3.463 5 O -0.535 6.535 6 O -0.352 6.352 7 C 0.077 3.923 8 C -0.101 4.101 9 H 0.120 0.880 10 C -0.162 4.162 11 C 0.077 3.923 12 H 0.105 0.895 13 O -0.583 6.583 14 C -0.125 4.125 15 C -0.101 4.101 16 C -0.206 4.206 17 C 0.031 3.969 18 C -0.061 4.061 19 O -0.542 6.542 20 Si 0.807 3.193 21 H 0.079 0.921 22 H 0.122 0.878 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.396 0.604 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.189 0.811 33 H 0.140 0.860 34 H 0.388 0.612 35 H -0.292 1.292 36 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -4.539 -0.601 5.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.077 5.077 3 C -0.190 4.190 4 C 0.385 3.615 5 O -0.426 6.426 6 O -0.269 6.269 7 C 0.004 3.996 8 C -0.119 4.119 9 H 0.138 0.862 10 C -0.200 4.200 11 C 0.018 3.982 12 H 0.123 0.877 13 O -0.391 6.391 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.229 4.229 17 C -0.089 4.089 18 C -0.169 4.169 19 O -0.350 6.350 20 Si 0.709 3.291 21 H 0.098 0.902 22 H 0.140 0.860 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.246 0.754 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.173 0.827 32 H 0.206 0.794 33 H 0.158 0.842 34 H 0.238 0.762 35 H -0.218 1.218 36 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges -2.403 -4.609 -0.852 5.267 hybrid contribution -1.194 0.784 0.977 1.730 sum -3.596 -3.825 0.126 5.252 Atomic orbital electron populations 1.22780 0.74663 1.06679 1.04992 1.43994 1.07729 1.04162 1.51800 1.19521 0.91749 0.83776 1.23947 1.20033 0.80882 0.88221 0.72407 1.90896 1.55655 1.47468 1.48549 1.86586 1.24775 1.31326 1.84206 1.23211 0.96073 0.77819 1.02537 1.22348 0.91359 0.98714 0.99515 0.86238 1.23754 0.99434 1.00500 0.96296 1.23391 0.96845 0.87843 0.90116 0.87746 1.86490 1.63307 1.43318 1.46031 1.23105 0.97722 0.95356 1.00089 1.21601 0.94080 0.95999 1.01022 1.21024 0.96172 0.94413 1.11282 1.21428 0.91332 0.89730 1.06369 1.25208 0.93215 0.93272 1.05231 1.86549 1.30027 1.88321 1.30099 0.93184 0.83288 0.73687 0.78897 0.90219 0.86023 0.88861 0.91658 0.90985 0.89635 0.90439 0.75399 0.90049 0.88974 0.82701 0.79434 0.84226 0.76154 1.21833 1.22026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.10 10.21 127.77 1.30 1.20 16 2 N -0.40 -0.87 3.15 -520.20 -1.64 -2.51 16 3 C -0.08 -0.55 6.88 40.32 0.28 -0.27 16 4 C 0.54 5.21 7.92 69.97 0.55 5.77 16 5 O -0.53 -8.30 16.68 19.43 0.32 -7.97 16 6 O -0.35 -1.80 7.66 -58.08 -0.44 -2.24 16 7 C 0.08 0.22 5.32 71.98 0.38 0.61 16 8 C -0.10 0.21 4.02 -10.27 -0.04 0.17 16 9 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 10 C -0.16 0.37 7.47 31.12 0.23 0.60 16 11 C 0.08 -0.18 5.21 31.12 0.16 -0.01 16 12 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 13 O -0.58 -0.65 13.67 -148.98 -2.04 -2.69 16 14 C -0.13 0.17 7.47 31.12 0.23 0.40 16 15 C -0.10 -0.46 10.66 22.59 0.24 -0.21 16 16 C -0.21 0.20 9.37 22.01 0.21 0.40 16 17 C 0.03 -0.02 6.13 41.44 0.25 0.23 16 18 C -0.06 0.30 2.98 71.24 0.21 0.51 16 19 O -0.54 1.97 9.98 -148.98 -1.49 0.49 16 20 Si 0.81 -4.66 31.09 68.60 2.13 -2.53 16 21 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 22 H 0.12 -0.61 4.98 -2.39 -0.01 -0.62 16 23 H 0.09 -0.17 6.16 -2.39 -0.01 -0.18 16 24 H 0.07 0.31 7.84 -2.39 -0.02 0.30 16 25 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.08 0.06 7.90 -2.38 -0.02 0.04 16 28 H 0.40 -2.84 9.12 -74.06 -0.68 -3.51 16 29 H 0.08 0.12 8.10 -2.39 -0.02 0.11 16 30 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.19 -1.53 6.85 -2.91 -0.02 -1.55 16 33 H 0.14 -0.99 7.96 -2.39 -0.02 -1.01 16 34 H 0.39 -3.17 8.37 -74.05 -0.62 -3.79 16 35 H -0.29 -0.08 7.11 99.48 0.71 0.62 16 36 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 Total: 0.00 -19.44 304.26 0.73 -18.71 By element: Atomic # 1 Polarization: -10.50 SS G_CDS: -0.14 Total: -10.64 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.02 Total: 9.39 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -1.64 Total: -2.51 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -3.64 Total: -12.42 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.13 Total: -2.53 kcal Total: -19.44 0.73 -18.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_11354868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.146 kcal (2) G-P(sol) polarization free energy of solvation -19.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds