Wall clock time and date at job start Sat Mar 6 2021 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37693 * 125.63621 * 2 1 4 4 C 1.46503 * 126.26240 * 0.22661 * 3 2 1 5 5 O 1.21617 * 119.99698 * 179.71247 * 4 3 2 6 6 O 1.34890 * 119.99759 * 359.71785 * 4 3 2 7 7 C 1.45201 * 116.99709 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47228 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.47409 * 179.97438 * 8 7 6 10 10 O 1.42970 * 109.46677 * 299.99923 * 8 7 6 11 11 C 1.43091 * 113.76864 * 178.79545 * 10 8 7 12 12 C 1.53259 * 108.94450 * 302.02591 * 11 10 8 13 13 H 1.09004 * 109.57696 * 294.72076 * 12 11 10 14 14 N 1.46495 * 109.68438 * 174.39484 * 12 11 10 15 15 C 1.34524 * 124.46166 * 300.27716 * 14 12 11 16 16 O 1.21450 * 125.71061 * 0.04020 * 15 14 12 17 17 C 1.47814 * 108.58232 * 179.90416 * 15 14 12 18 18 C 1.40942 * 105.87947 * 0.34406 * 17 15 14 19 19 C 1.38563 * 119.82109 * 179.79443 * 18 17 15 20 20 C 1.38610 * 119.72326 * 0.02876 * 19 18 17 21 21 C 1.38233 * 120.45438 * 359.95117 * 20 19 18 22 22 C 1.38567 * 134.29879 * 180.10240 * 17 15 14 23 23 C 1.34527 * 124.46260 * 120.57475 * 14 12 11 24 24 O 1.21448 * 125.70643 * 359.94494 * 23 14 12 25 25 C 1.53261 * 108.84197 * 54.52442 * 12 11 10 26 26 O 1.42962 * 109.47430 * 59.99273 * 8 7 6 27 27 C 1.37995 * 107.47499 * 179.97438 * 3 2 1 28 28 C 1.39790 * 106.96679 * 0.02562 * 27 3 2 29 29 C 1.34955 * 125.63349 * 179.97438 * 2 1 3 30 30 C 1.50697 * 125.50933 * 0.03146 * 29 2 1 31 31 O 1.42899 * 109.47008 * 30.02946 * 30 29 2 32 32 Si 1.86304 * 109.47219 * 150.02523 * 30 29 2 33 33 H 1.09006 * 109.47115 * 90.02336 * 1 2 3 34 34 H 1.08995 * 109.47185 * 210.02090 * 1 2 3 35 35 H 1.08999 * 109.46899 * 330.02660 * 1 2 3 36 36 H 1.09007 * 109.46850 * 299.99538 * 7 6 4 37 37 H 1.08992 * 109.47511 * 59.99513 * 7 6 4 38 38 H 1.09007 * 109.56153 * 182.18925 * 11 10 8 39 39 H 1.09000 * 109.64998 * 61.91960 * 11 10 8 40 40 H 1.08004 * 120.13815 * 179.97438 * 19 18 17 41 41 H 1.07999 * 119.77412 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.76962 * 180.02562 * 21 20 19 43 43 H 1.08003 * 120.14425 * 0.29663 * 22 17 15 44 44 H 1.09002 * 109.56201 * 185.63769 * 25 12 11 45 45 H 1.08998 * 109.64830 * 65.36710 * 25 12 11 46 46 H 1.08004 * 126.51508 * 180.02562 * 27 3 2 47 47 H 1.08005 * 126.07831 * 179.97438 * 28 27 3 48 48 H 1.08999 * 109.47372 * 270.02655 * 30 29 2 49 49 H 0.96700 * 114.00686 * 59.99646 * 31 30 29 50 50 H 1.48502 * 109.99865 * 58.68496 * 32 30 29 51 51 H 1.48495 * 109.99878 * 180.02562 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2673 1.1191 0.0000 4 6 1.8121 2.5116 0.0047 5 8 2.6243 3.4168 0.0094 6 8 0.4922 2.7897 0.0038 7 6 0.1139 4.1915 0.0092 8 6 -1.4116 4.3082 0.0080 9 1 -1.6956 5.3605 0.0125 10 8 -1.9368 3.6773 -1.1626 11 6 -3.3651 3.7091 -1.2434 12 6 -3.9489 3.0286 -0.0005 13 1 -3.6840 1.9712 -0.0045 14 7 -5.4071 3.1693 0.0000 15 6 -6.0583 4.3464 0.0055 16 8 -5.5385 5.4441 0.0100 17 6 -7.5123 4.0804 0.0017 18 6 -7.6477 2.6775 0.0019 19 6 -8.9104 2.1071 0.0030 20 6 -10.0323 2.9212 0.0034 21 6 -9.8995 4.2971 0.0037 22 6 -8.6427 4.8818 0.0026 23 6 -6.2714 2.1383 0.0008 24 8 -5.9710 0.9616 0.0003 25 6 -3.3680 3.6986 1.2495 26 8 -1.9396 3.6675 1.1719 27 6 3.5785 0.6890 0.0006 28 6 3.5493 -0.7086 0.0003 29 6 2.2513 -1.0969 0.0005 30 6 1.7642 -2.5229 0.0005 31 8 0.5067 -2.5968 -0.6743 32 14 3.0037 -3.6025 -0.8764 33 1 -0.3634 -0.0004 -1.0277 34 1 -0.3633 -0.8898 0.5141 35 1 -0.3633 0.8902 0.5134 36 1 0.5139 4.6723 0.9020 37 1 0.5167 4.6800 -0.8779 38 1 -3.6920 3.1781 -2.1375 39 1 -3.7068 4.7432 -1.2877 40 1 -9.0201 1.0326 0.0028 41 1 -11.0169 2.4774 0.0039 42 1 -10.7811 4.9209 0.0044 43 1 -8.5450 5.9574 0.0020 44 1 -3.6970 3.1602 2.1384 45 1 -3.7081 4.7328 1.3026 46 1 4.4597 1.3134 0.0011 47 1 4.4088 -1.3627 0.0003 48 1 1.6458 -2.8665 1.0281 49 1 0.5371 -2.3056 -1.5960 50 1 4.3241 -3.5098 -0.2031 51 1 2.5347 -5.0115 -0.8838 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_13594054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:46:41 Heat of formation + Delta-G solvation = -137.683502 kcal Electronic energy + Delta-G solvation = -42579.371988 eV Core-core repulsion = 36993.015439 eV Total energy + Delta-G solvation = -5586.356549 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.144 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.72612 -42.77923 -41.52320 -40.88804 -39.96610 -39.48997 -37.88187 -37.62903 -37.19591 -37.13296 -34.59688 -33.98338 -32.17682 -32.06119 -31.42939 -29.93511 -27.60656 -27.52855 -27.14117 -26.36687 -25.43611 -24.41617 -23.50963 -23.35753 -22.33118 -21.53281 -21.05721 -20.83882 -19.19810 -19.15031 -18.98630 -18.85547 -18.42132 -18.12966 -17.76480 -17.62180 -17.43969 -17.13063 -16.80006 -16.65508 -16.48145 -16.20180 -15.97258 -15.83036 -15.51999 -15.50056 -15.34356 -15.08015 -14.99128 -14.91350 -14.81674 -14.71290 -14.47228 -14.41612 -14.30313 -13.81764 -13.70168 -13.61005 -13.30098 -13.29683 -12.95844 -12.87899 -12.70833 -12.50935 -12.27523 -12.25973 -12.10948 -11.93071 -11.87179 -11.71864 -11.64142 -11.00783 -10.88658 -10.74795 -10.27303 -10.26065 -9.87082 -9.30215 -4.90278 -1.12820 -0.07543 0.02916 0.85212 0.87240 1.13343 1.32070 1.50073 1.59805 1.68870 1.83351 1.99286 2.05740 2.14643 2.19619 2.42721 2.55818 3.05306 3.12565 3.19586 3.28686 3.39632 3.43994 3.51014 3.52164 3.65792 3.80028 3.89358 3.92931 4.02564 4.02747 4.04564 4.11710 4.13382 4.18421 4.22086 4.30692 4.33246 4.39775 4.42311 4.43853 4.48389 4.52602 4.77015 4.78989 4.86162 4.90257 4.98222 5.14483 5.16970 5.23770 5.31743 5.38407 5.56906 5.63883 5.67549 5.80328 5.90387 6.03255 6.32928 6.53640 6.58638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.397 5.397 3 C -0.075 4.075 4 C 0.540 3.460 5 O -0.530 6.530 6 O -0.342 6.342 7 C 0.081 3.919 8 C 0.243 3.757 9 H 0.108 0.892 10 O -0.381 6.381 11 C 0.052 3.948 12 C 0.077 3.923 13 H 0.122 0.878 14 N -0.569 5.569 15 C 0.576 3.424 16 O -0.481 6.481 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.045 4.045 20 C -0.084 4.084 21 C -0.084 4.084 22 C -0.043 4.043 23 C 0.577 3.423 24 O -0.487 6.487 25 C 0.050 3.950 26 O -0.384 6.384 27 C -0.096 4.096 28 C -0.217 4.217 29 C 0.038 3.962 30 C -0.056 4.056 31 O -0.551 6.551 32 Si 0.806 3.194 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.155 0.845 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.157 0.843 47 H 0.167 0.833 48 H 0.120 0.880 49 H 0.395 0.605 50 H -0.275 1.275 51 H -0.291 1.291 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 0.133 -2.601 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.071 5.071 3 C -0.184 4.184 4 C 0.388 3.612 5 O -0.420 6.420 6 O -0.258 6.258 7 C 0.007 3.993 8 C 0.149 3.851 9 H 0.125 0.875 10 O -0.300 6.300 11 C -0.026 4.026 12 C -0.025 4.025 13 H 0.139 0.861 14 N -0.314 5.314 15 C 0.367 3.633 16 O -0.353 6.353 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.063 4.063 20 C -0.102 4.102 21 C -0.102 4.102 22 C -0.062 4.062 23 C 0.368 3.632 24 O -0.359 6.359 25 C -0.027 4.027 26 O -0.304 6.304 27 C -0.122 4.122 28 C -0.240 4.240 29 C -0.083 4.083 30 C -0.165 4.165 31 O -0.359 6.359 32 Si 0.709 3.291 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.171 0.829 41 H 0.193 0.807 42 H 0.193 0.807 43 H 0.173 0.827 44 H 0.132 0.868 45 H 0.092 0.908 46 H 0.174 0.826 47 H 0.185 0.815 48 H 0.137 0.863 49 H 0.246 0.754 50 H -0.201 1.201 51 H -0.218 1.218 Dipole moment (debyes) X Y Z Total from point charges -8.966 -0.602 -1.959 9.197 hybrid contribution -0.151 0.785 0.747 1.094 sum -9.117 0.182 -1.212 9.199 Atomic orbital electron populations 1.22424 0.74473 1.05117 1.05035 1.43968 1.07637 1.04164 1.51347 1.19465 0.91491 0.83831 1.23646 1.19954 0.80680 0.88203 0.72397 1.90893 1.55465 1.47147 1.48542 1.86703 1.24886 1.30065 1.84162 1.23298 0.90720 0.79861 1.05416 1.23815 0.90813 0.94629 0.75877 0.87511 1.88232 1.19917 1.79919 1.41954 1.23022 0.80305 1.01725 0.97509 1.22569 0.76658 1.04581 0.98667 0.86053 1.46453 1.07728 1.08922 1.68249 1.18729 0.88118 0.82826 0.73587 1.90799 1.74967 1.24673 1.44910 1.20454 0.92954 0.94887 1.08036 1.20436 0.93555 0.94241 1.08062 1.21161 0.89117 1.02280 0.93764 1.21957 0.99761 0.93622 0.94829 1.21965 0.97640 0.95776 0.94825 1.21163 0.90038 1.01290 0.93661 1.18751 0.86658 0.84276 0.73521 1.90827 1.83508 1.16561 1.45012 1.23029 0.80323 1.01825 0.97491 1.88228 1.19933 1.79533 1.42658 1.21523 0.94152 0.95549 1.00979 1.20917 0.95941 0.94727 1.12431 1.21412 0.90987 0.89858 1.06008 1.25215 0.94887 0.93427 1.03001 1.86475 1.29719 1.89119 1.30577 0.92945 0.73573 0.74322 0.88307 0.89050 0.88051 0.89593 0.87806 0.87503 0.86538 0.90788 0.82879 0.80713 0.80673 0.82684 0.86850 0.90751 0.82567 0.81539 0.86275 0.75435 1.20121 1.21822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 9.33 127.77 1.19 1.32 16 2 N -0.40 -1.89 3.15 -520.20 -1.64 -3.53 16 3 C -0.07 -0.65 6.89 40.32 0.28 -0.37 16 4 C 0.54 5.84 7.92 69.98 0.55 6.40 16 5 O -0.53 -8.01 16.68 19.45 0.32 -7.69 16 6 O -0.34 -2.66 7.45 -51.74 -0.39 -3.05 16 7 C 0.08 0.30 5.56 71.98 0.40 0.70 16 8 C 0.24 0.61 3.59 71.98 0.26 0.87 16 9 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 10 O -0.38 -1.54 10.44 -122.14 -1.27 -2.81 16 11 C 0.05 0.08 6.33 72.07 0.46 0.53 16 12 C 0.08 0.16 3.07 45.17 0.14 0.30 16 13 H 0.12 0.42 7.59 -2.38 -0.02 0.40 16 14 N -0.57 -1.35 2.53 -739.56 -1.87 -3.22 16 15 C 0.58 1.44 7.35 86.82 0.64 2.08 16 16 O -0.48 -2.82 15.18 -3.56 -0.05 -2.87 16 17 C -0.16 0.17 6.40 -20.00 -0.13 0.04 16 18 C -0.16 0.09 6.40 -20.00 -0.13 -0.04 16 19 C -0.04 0.25 10.09 22.44 0.23 0.48 16 20 C -0.08 0.89 10.04 22.36 0.22 1.12 16 21 C -0.08 0.91 10.04 22.36 0.22 1.14 16 22 C -0.04 0.27 10.09 22.44 0.23 0.50 16 23 C 0.58 2.22 8.02 86.82 0.70 2.91 16 24 O -0.49 -4.43 17.44 -3.55 -0.06 -4.49 16 25 C 0.05 0.10 6.32 72.07 0.46 0.56 16 26 O -0.38 -1.78 10.44 -122.14 -1.27 -3.05 16 27 C -0.10 -0.64 10.66 22.59 0.24 -0.40 16 28 C -0.22 -0.63 9.37 22.01 0.21 -0.43 16 29 C 0.04 0.08 6.13 41.44 0.25 0.34 16 30 C -0.06 0.09 2.87 71.23 0.20 0.29 16 31 O -0.55 1.18 10.35 -148.98 -1.54 -0.36 16 32 Si 0.81 -2.97 31.28 68.60 2.15 -0.82 16 33 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 34 H 0.10 0.10 6.77 -2.39 -0.02 0.09 16 35 H 0.09 0.40 6.14 -2.39 -0.01 0.39 16 36 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 39 H 0.07 0.14 6.68 -2.39 -0.02 0.12 16 40 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 41 H 0.18 -2.89 8.06 -2.91 -0.02 -2.92 16 42 H 0.18 -2.95 8.06 -2.91 -0.02 -2.97 16 43 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 44 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.07 0.17 6.68 -2.39 -0.02 0.16 16 46 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 47 H 0.17 -0.13 6.62 -2.91 -0.02 -0.15 16 48 H 0.12 -0.12 7.96 -2.39 -0.02 -0.14 16 49 H 0.40 -3.52 8.70 -74.06 -0.64 -4.16 16 50 H -0.28 -0.11 6.76 99.48 0.67 0.56 16 51 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 Total: 0.00 -25.30 431.56 1.37 -23.94 By element: Atomic # 1 Polarization: -10.76 SS G_CDS: 0.38 Total: -10.38 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.62 Total: 18.34 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -3.51 Total: -6.75 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -4.27 Total: -24.32 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.15 Total: -0.82 kcal Total: -25.30 1.37 -23.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_13594054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.748 kcal (2) G-P(sol) polarization free energy of solvation -25.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds