Wall clock time and date at job start Sat Mar 6 2021 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37692 * 125.63509 * 2 1 4 4 C 1.46500 * 126.26082 * 359.97438 * 3 2 1 5 5 O 1.21619 * 119.99794 * 179.71630 * 4 3 2 6 6 O 1.34886 * 119.99829 * 359.71753 * 4 3 2 7 7 C 1.45209 * 116.99841 * 180.02562 * 6 4 3 8 8 C 1.52991 * 109.47384 * 179.97438 * 7 6 4 9 9 H 1.09003 * 112.84801 * 316.19513 * 8 7 6 10 10 C 1.53781 * 113.61611 * 87.50118 * 8 7 6 11 11 C 1.54049 * 87.08031 * 139.97702 * 10 8 7 12 12 H 1.09000 * 113.61076 * 89.06984 * 11 10 8 13 13 O 1.42891 * 113.69771 * 220.05337 * 11 10 8 14 14 C 1.42903 * 114.00062 * 247.41949 * 13 11 10 15 15 C 1.52999 * 109.46836 * 60.00351 * 14 13 11 16 16 C 1.53001 * 109.47003 * 180.02562 * 14 13 11 17 17 C 1.52995 * 109.47392 * 300.00199 * 14 13 11 18 18 C 1.53781 * 113.61529 * 184.99924 * 8 7 6 19 19 C 1.37991 * 107.47519 * 179.73846 * 3 2 1 20 20 C 1.39796 * 106.96767 * 0.25865 * 19 3 2 21 21 C 1.34960 * 125.63475 * 180.19478 * 2 1 3 22 22 C 1.50701 * 125.51034 * 0.02562 * 21 2 1 23 23 O 1.42905 * 109.47017 * 30.28484 * 22 21 2 24 24 Si 1.86299 * 109.47253 * 150.28484 * 22 21 2 25 25 H 1.08993 * 109.47662 * 90.02770 * 1 2 3 26 26 H 1.09005 * 109.47141 * 210.02941 * 1 2 3 27 27 H 1.08997 * 109.47215 * 330.02196 * 1 2 3 28 28 H 1.08997 * 109.46687 * 59.99575 * 7 6 4 29 29 H 1.09002 * 109.46755 * 300.00188 * 7 6 4 30 30 H 1.09005 * 113.61471 * 254.53285 * 10 8 7 31 31 H 1.08996 * 113.61178 * 25.34627 * 10 8 7 32 32 H 1.08998 * 109.47441 * 60.00084 * 15 14 13 33 33 H 1.09003 * 109.46908 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47099 * 299.99962 * 15 14 13 35 35 H 1.08990 * 109.47463 * 60.00510 * 16 14 13 36 36 H 1.09004 * 109.47085 * 180.02562 * 16 14 13 37 37 H 1.08998 * 109.47247 * 299.99900 * 16 14 13 38 38 H 1.09003 * 109.47319 * 59.99480 * 17 14 13 39 39 H 1.09003 * 109.47285 * 179.97438 * 17 14 13 40 40 H 1.09002 * 109.46956 * 300.00154 * 17 14 13 41 41 H 1.09002 * 113.61445 * 334.56787 * 18 8 7 42 42 H 1.09002 * 113.61408 * 105.38518 * 18 8 7 43 43 H 1.08001 * 126.51585 * 180.28401 * 19 3 2 44 44 H 1.07997 * 126.08176 * 179.97438 * 20 19 3 45 45 H 1.09002 * 109.47417 * 270.29102 * 22 21 2 46 46 H 0.96702 * 113.99840 * 60.00512 * 23 22 21 47 47 H 1.48499 * 109.99895 * 180.02562 * 24 22 21 48 48 H 1.48499 * 109.99837 * 301.32121 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2673 1.1191 0.0000 4 6 1.8120 2.5116 -0.0005 5 8 2.6242 3.4168 0.0047 6 8 0.4922 2.7896 -0.0068 7 6 0.1138 4.1915 -0.0075 8 6 -1.4117 4.3081 -0.0157 9 1 -1.8852 3.6181 -0.7142 10 6 -2.0382 4.2924 1.3887 11 6 -3.0034 5.3820 0.8843 12 1 -3.9123 4.9848 0.4323 13 8 -3.2620 6.4089 1.8436 14 6 -4.6053 6.4239 2.3310 15 6 -4.9179 5.0868 3.0057 16 6 -4.7669 7.5578 3.3455 17 6 -5.5692 6.6437 1.1634 18 6 -1.9183 5.7547 -0.1398 19 6 3.5784 0.6890 0.0060 20 6 3.5494 -0.7086 0.0036 21 6 2.2513 -1.0969 -0.0037 22 6 1.7643 -2.5230 -0.0091 23 8 0.5096 -2.5953 -0.6893 24 14 3.0075 -3.6005 -0.8833 25 1 -0.3634 -0.0005 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5135 28 1 0.5197 4.6768 -0.8951 29 1 0.5108 4.6754 0.8848 30 1 -2.5315 3.3525 1.6362 31 1 -1.3622 4.6348 2.1721 32 1 -4.2312 4.9302 3.8376 33 1 -5.9423 5.0984 3.3780 34 1 -4.8028 4.2793 2.2827 35 1 -4.5444 8.5102 2.8646 36 1 -5.7914 7.5690 3.7177 37 1 -4.0803 7.4016 4.1775 38 1 -5.4541 5.8363 0.4403 39 1 -6.5938 6.6547 1.5352 40 1 -5.3464 7.5963 0.6828 41 1 -1.2100 6.4983 0.2256 42 1 -2.3135 5.9957 -1.1266 43 1 4.4596 1.3135 0.0119 44 1 4.4088 -1.3627 0.0065 45 1 1.6416 -2.8690 1.0172 46 1 0.5440 -2.3021 -1.6102 47 1 2.5386 -5.0095 -0.8959 48 1 3.2074 -3.1197 -2.2740 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_14598394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:22:54 Heat of formation + Delta-G solvation = -85.606566 kcal Electronic energy + Delta-G solvation = -28076.314728 eV Core-core repulsion = 24100.196637 eV Total energy + Delta-G solvation = -3976.118092 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.182 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.75494 -41.35351 -40.69601 -38.60386 -37.91472 -37.36756 -34.02981 -33.88514 -31.73856 -29.85780 -28.37626 -28.35796 -27.56339 -26.99137 -26.66971 -24.22708 -23.20108 -21.50845 -21.04269 -20.86485 -20.45376 -19.01066 -18.50420 -18.10307 -17.70240 -17.57452 -16.80078 -16.65298 -16.17632 -15.91837 -15.79938 -15.48412 -15.01635 -14.85138 -14.76803 -14.54709 -14.37027 -14.08326 -14.07254 -13.76200 -13.51679 -13.35807 -13.33881 -13.27798 -13.01685 -12.93227 -12.82213 -12.68280 -12.46673 -12.43166 -12.23214 -12.08812 -11.95177 -11.88159 -11.65589 -11.38394 -11.22006 -10.94480 -10.39230 -9.83825 -9.27810 -4.84544 0.03444 1.14207 1.37093 1.56849 1.70546 1.81427 2.01796 2.07512 2.69565 3.19042 3.33428 3.45024 3.49140 3.58514 3.71801 3.78200 3.88894 3.92685 3.95783 4.05385 4.08823 4.14232 4.22962 4.32572 4.39302 4.45624 4.50851 4.52339 4.60470 4.64865 4.72091 4.73293 4.74312 4.76385 4.81825 4.88794 4.91771 4.94323 4.96286 5.06515 5.08951 5.15207 5.21336 5.29002 5.31233 5.36318 5.59958 5.82377 6.06371 6.33314 6.39486 6.56239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.403 5.403 3 C -0.079 4.079 4 C 0.537 3.463 5 O -0.535 6.535 6 O -0.352 6.352 7 C 0.079 3.921 8 C -0.099 4.099 9 H 0.119 0.881 10 C -0.148 4.148 11 C 0.062 3.938 12 H 0.106 0.894 13 O -0.383 6.383 14 C 0.098 3.902 15 C -0.173 4.173 16 C -0.140 4.140 17 C -0.177 4.177 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.207 4.207 21 C 0.032 3.968 22 C -0.062 4.062 23 O -0.544 6.544 24 Si 0.806 3.194 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.155 0.845 44 H 0.188 0.812 45 H 0.140 0.860 46 H 0.387 0.613 47 H -0.294 1.294 48 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 -3.720 -0.040 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.078 5.078 3 C -0.188 4.188 4 C 0.385 3.615 5 O -0.425 6.425 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.117 4.117 9 H 0.137 0.863 10 C -0.186 4.186 11 C 0.004 3.996 12 H 0.123 0.877 13 O -0.303 6.303 14 C 0.059 3.941 15 C -0.231 4.231 16 C -0.198 4.198 17 C -0.234 4.234 18 C -0.164 4.164 19 C -0.127 4.127 20 C -0.230 4.230 21 C -0.088 4.088 22 C -0.170 4.170 23 O -0.351 6.351 24 Si 0.709 3.291 25 H 0.106 0.894 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.173 0.827 44 H 0.205 0.795 45 H 0.158 0.842 46 H 0.236 0.764 47 H -0.221 1.221 48 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges -3.450 -3.960 -0.050 5.252 hybrid contribution -0.898 0.880 -0.701 1.439 sum -4.347 -3.080 -0.751 5.381 Atomic orbital electron populations 1.22481 0.74586 1.05605 1.04891 1.43983 1.07741 1.04203 1.51830 1.19496 0.91687 0.83747 1.23915 1.20014 0.80902 0.88188 0.72414 1.90896 1.55664 1.47454 1.48533 1.86584 1.24732 1.31396 1.84187 1.23196 0.95960 0.77758 1.02558 1.22316 0.91361 0.98813 0.99255 0.86336 1.23643 0.98935 0.99659 0.96323 1.23699 0.97120 0.88766 0.90016 0.87659 1.88021 1.29488 1.53559 1.59202 1.21686 0.82102 0.96172 0.94138 1.22441 1.02802 0.96598 1.01232 1.21801 1.02868 0.97141 0.97946 1.22449 1.00157 1.02476 0.98308 1.23225 0.97822 0.95327 0.99990 1.21602 0.94108 0.95977 1.01018 1.21021 0.96172 0.94428 1.11339 1.21462 0.91327 0.89713 1.06296 1.25188 0.93680 0.93233 1.04876 1.86574 1.30080 1.88581 1.29878 0.93233 0.83113 0.73686 0.79072 0.89442 0.87694 0.88971 0.90913 0.91644 0.90149 0.90532 0.92575 0.90549 0.91847 0.92340 0.89678 0.92534 0.91644 0.90388 0.92238 0.89746 0.89108 0.82695 0.79494 0.84245 0.76393 1.22146 1.21925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.14 9.32 127.77 1.19 1.05 16 2 N -0.40 -0.88 3.15 -520.19 -1.64 -2.52 16 3 C -0.08 -0.54 6.89 40.32 0.28 -0.26 16 4 C 0.54 5.20 7.92 69.97 0.55 5.75 16 5 O -0.53 -8.28 16.68 19.45 0.32 -7.95 16 6 O -0.35 -1.79 7.66 -58.00 -0.44 -2.23 16 7 C 0.08 0.23 5.31 71.98 0.38 0.61 16 8 C -0.10 0.17 4.02 -10.27 -0.04 0.13 16 9 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 10 C -0.15 0.09 7.48 31.21 0.23 0.32 16 11 C 0.06 -0.03 2.83 31.21 0.09 0.05 16 12 H 0.11 -0.36 5.55 -2.39 -0.01 -0.37 16 13 O -0.38 -1.52 10.00 -148.98 -1.49 -3.01 16 14 C 0.10 0.03 1.11 -10.80 -0.01 0.02 16 15 C -0.17 0.28 8.39 71.98 0.60 0.88 16 16 C -0.14 0.01 8.84 71.98 0.64 0.64 16 17 C -0.18 0.38 8.38 71.98 0.60 0.98 16 18 C -0.13 0.16 7.46 31.12 0.23 0.39 16 19 C -0.10 -0.47 10.66 22.59 0.24 -0.22 16 20 C -0.21 0.16 9.37 22.01 0.21 0.36 16 21 C 0.03 -0.02 6.13 41.44 0.25 0.23 16 22 C -0.06 0.28 2.87 71.24 0.20 0.48 16 23 O -0.54 1.65 10.37 -148.98 -1.55 0.10 16 24 Si 0.81 -4.32 31.10 68.60 2.13 -2.18 16 25 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.10 -0.36 6.80 -2.38 -0.02 -0.38 16 27 H 0.09 -0.12 6.16 -2.39 -0.01 -0.13 16 28 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.07 0.33 7.84 -2.39 -0.02 0.31 16 30 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 31 H 0.08 0.20 7.90 -2.39 -0.02 0.19 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.06 -0.17 7.02 -2.39 -0.02 -0.18 16 35 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.06 -0.23 6.25 -2.39 -0.01 -0.24 16 39 H 0.08 -0.32 8.14 -2.39 -0.02 -0.33 16 40 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 42 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.19 -1.48 6.85 -2.91 -0.02 -1.50 16 45 H 0.14 -0.95 7.96 -2.39 -0.02 -0.97 16 46 H 0.39 -2.79 8.70 -74.06 -0.64 -3.44 16 47 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 48 H -0.29 -0.23 7.11 99.48 0.71 0.48 16 Total: 0.00 -17.22 385.01 3.34 -13.88 By element: Atomic # 1 Polarization: -7.85 SS G_CDS: 0.34 Total: -7.51 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.65 Total: 11.43 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -1.64 Total: -2.52 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -3.16 Total: -13.10 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: 2.13 Total: -2.18 kcal Total: -17.22 3.34 -13.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_14598394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.725 kcal (2) G-P(sol) polarization free energy of solvation -17.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds