Wall clock time and date at job start Sat Mar 6 2021 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37696 * 125.63930 * 2 1 4 4 C 1.46495 * 126.26329 * 359.96708 * 3 2 1 5 5 O 1.21623 * 120.00200 * 179.71454 * 4 3 2 6 6 O 1.34894 * 119.99576 * 359.71191 * 4 3 2 7 7 C 1.45199 * 116.99901 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47010 * 179.97438 * 7 6 4 9 9 H 1.08992 * 112.85428 * 316.19837 * 8 7 6 10 10 C 1.53780 * 113.61151 * 87.50762 * 8 7 6 11 11 C 1.53786 * 87.08292 * 139.97704 * 10 8 7 12 12 H 1.08993 * 113.69429 * 220.00745 * 11 10 8 13 13 N 1.46506 * 113.61017 * 89.11397 * 11 10 8 14 14 C 1.34777 * 119.99873 * 107.50857 * 13 11 10 15 15 O 1.21512 * 119.99831 * 359.97438 * 14 13 11 16 16 O 1.34634 * 119.99821 * 179.97438 * 14 13 11 17 17 C 1.45205 * 116.99560 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47209 * 60.00134 * 17 16 14 19 19 C 1.52998 * 109.46886 * 179.97438 * 17 16 14 20 20 C 1.52997 * 109.47276 * 299.99875 * 17 16 14 21 21 C 1.53780 * 87.07926 * 334.56872 * 11 10 8 22 22 C 1.37997 * 107.47596 * 179.70210 * 3 2 1 23 23 C 1.39791 * 106.96944 * 0.26323 * 22 3 2 24 24 C 1.34968 * 125.63762 * 180.16031 * 2 1 3 25 25 C 1.50702 * 125.50149 * 0.03255 * 24 2 1 26 26 O 1.42899 * 109.47317 * 30.29006 * 25 24 2 27 27 Si 1.86303 * 109.46782 * 150.28954 * 25 24 2 28 28 H 1.08996 * 109.47110 * 90.02197 * 1 2 3 29 29 H 1.08997 * 109.47098 * 210.02508 * 1 2 3 30 30 H 1.09006 * 109.46863 * 330.02362 * 1 2 3 31 31 H 1.09005 * 109.46527 * 60.00201 * 7 6 4 32 32 H 1.08996 * 109.47506 * 300.00636 * 7 6 4 33 33 H 1.09002 * 113.61686 * 25.43406 * 10 8 7 34 34 H 1.08998 * 113.61586 * 254.52588 * 10 8 7 35 35 H 0.96995 * 120.00050 * 287.22972 * 13 11 10 36 36 H 1.09006 * 109.47113 * 59.99983 * 18 17 16 37 37 H 1.08994 * 109.47260 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47040 * 299.99967 * 18 17 16 39 39 H 1.09007 * 109.46935 * 60.00474 * 19 17 16 40 40 H 1.08999 * 109.47664 * 179.97438 * 19 17 16 41 41 H 1.08998 * 109.47592 * 300.00301 * 19 17 16 42 42 H 1.08996 * 109.47165 * 60.00552 * 20 17 16 43 43 H 1.09003 * 109.47043 * 179.97438 * 20 17 16 44 44 H 1.08999 * 109.47232 * 300.00130 * 20 17 16 45 45 H 1.09001 * 113.61558 * 139.98316 * 21 11 10 46 46 H 1.09003 * 113.61114 * 270.79751 * 21 11 10 47 47 H 1.08002 * 126.51410 * 180.28614 * 22 3 2 48 48 H 1.08007 * 126.08221 * 179.97438 * 23 22 3 49 49 H 1.09003 * 109.46947 * 270.28351 * 25 24 2 50 50 H 0.96690 * 114.00004 * 59.99975 * 26 25 24 51 51 H 1.48498 * 109.99760 * 179.97438 * 27 25 24 52 52 H 1.48497 * 110.00046 * 301.31626 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2673 1.1191 0.0000 4 6 1.8122 2.5115 -0.0007 5 8 2.6244 3.4168 0.0046 6 8 0.4923 2.7897 -0.0073 7 6 0.1140 4.1915 -0.0069 8 6 -1.4115 4.3081 -0.0155 9 1 -1.8848 3.6188 -0.7147 10 6 -2.0385 4.2914 1.3886 11 6 -3.0019 5.3795 0.8856 12 1 -3.2000 6.1618 1.6182 13 7 -4.2238 4.8461 0.2783 14 6 -5.3988 4.9437 0.9311 15 8 -5.4446 5.4736 2.0237 16 8 -6.5218 4.4540 0.3728 17 6 -7.7510 4.5936 1.1332 18 6 -8.0297 6.0769 1.3842 19 6 -8.9110 3.9838 0.3437 20 6 -7.6075 3.8678 2.4724 21 6 -1.9181 5.7549 -0.1387 22 6 3.5785 0.6889 0.0068 23 6 3.5493 -0.7087 0.0048 24 6 2.2513 -1.0969 -0.0031 25 6 1.7642 -2.5230 -0.0078 26 8 0.5096 -2.5956 -0.6881 27 14 3.0075 -3.6010 -0.8811 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 0.5202 4.6776 -0.8941 32 1 0.5107 4.6747 0.8859 33 1 -1.3632 4.6346 2.1724 34 1 -2.5320 3.3514 1.6353 35 1 -4.1878 4.4264 -0.5954 36 1 -8.1320 6.5940 0.4301 37 1 -8.9526 6.1817 1.9546 38 1 -7.2034 6.5118 1.9464 39 1 -8.7127 2.9270 0.1645 40 1 -9.8337 4.0881 0.9146 41 1 -9.0131 4.5011 -0.6102 42 1 -6.7812 4.3027 3.0346 43 1 -8.5300 3.9730 3.0433 44 1 -7.4089 2.8111 2.2935 45 1 -2.3143 5.9963 -1.1251 46 1 -1.2107 6.4992 0.2270 47 1 4.4596 1.3133 0.0130 48 1 4.4088 -1.3629 0.0084 49 1 1.6414 -2.8684 1.0188 50 1 0.5441 -2.3029 -1.6090 51 1 2.5391 -5.0101 -0.8920 52 1 3.2077 -3.1211 -2.2721 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_15734084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:53:17 Heat of formation + Delta-G solvation = -117.110383 kcal Electronic energy + Delta-G solvation = -33696.833616 eV Core-core repulsion = 29051.477554 eV Total energy + Delta-G solvation = -4645.356062 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.74387 -42.00596 -41.22956 -40.30225 -38.10166 -37.90331 -37.43336 -35.40493 -34.18551 -33.92697 -31.71839 -29.79097 -28.40429 -28.33660 -27.57363 -27.05169 -26.79397 -24.80092 -23.67171 -23.01716 -21.48452 -21.21159 -20.91904 -20.24561 -19.37668 -19.00077 -18.48788 -17.96204 -17.68896 -17.59694 -17.24132 -16.83721 -16.59468 -16.25063 -15.84129 -15.64711 -15.48492 -15.32734 -15.22008 -14.93989 -14.71452 -14.53969 -14.42722 -14.22992 -13.84358 -13.73172 -13.68064 -13.40390 -13.35063 -13.27378 -13.09780 -12.95656 -12.92620 -12.90498 -12.56516 -12.43426 -12.37197 -12.25592 -11.98786 -11.97030 -11.90664 -11.61714 -11.43611 -11.25607 -11.16473 -10.94549 -10.24705 -9.83136 -9.26970 -4.85041 0.05099 1.07821 1.14390 1.40319 1.58372 1.67902 1.70599 1.81462 2.03315 2.07459 3.05799 3.18767 3.31588 3.36651 3.46330 3.56871 3.69926 3.70725 3.76648 3.81942 3.90754 3.94757 4.14109 4.24725 4.31972 4.33714 4.39917 4.44560 4.50328 4.52500 4.57264 4.57869 4.67964 4.69508 4.72991 4.73296 4.78884 4.84222 4.85091 4.90231 4.95582 4.96807 5.01011 5.10079 5.14978 5.23576 5.24303 5.28698 5.42846 5.56696 5.60855 5.83665 6.06450 6.32862 6.33171 6.59334 7.28381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.403 5.403 3 C -0.079 4.079 4 C 0.539 3.461 5 O -0.533 6.533 6 O -0.354 6.354 7 C 0.073 3.927 8 C -0.101 4.101 9 H 0.112 0.888 10 C -0.145 4.145 11 C 0.133 3.867 12 H 0.096 0.904 13 N -0.683 5.683 14 C 0.646 3.354 15 O -0.592 6.592 16 O -0.369 6.369 17 C 0.128 3.872 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.207 4.207 24 C 0.030 3.970 25 C -0.062 4.062 26 O -0.544 6.544 27 Si 0.806 3.194 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.156 0.844 48 H 0.187 0.813 49 H 0.139 0.861 50 H 0.387 0.613 51 H -0.295 1.295 52 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -3.319 -2.044 4.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.078 5.078 3 C -0.189 4.189 4 C 0.386 3.614 5 O -0.424 6.424 6 O -0.271 6.271 7 C 0.000 4.000 8 C -0.119 4.119 9 H 0.130 0.870 10 C -0.184 4.184 11 C 0.028 3.972 12 H 0.114 0.886 13 N -0.342 5.342 14 C 0.400 3.600 15 O -0.483 6.483 16 O -0.284 6.284 17 C 0.092 3.908 18 C -0.238 4.238 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.159 4.159 22 C -0.127 4.127 23 C -0.230 4.230 24 C -0.089 4.089 25 C -0.170 4.170 26 O -0.351 6.351 27 Si 0.709 3.291 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.132 0.868 47 H 0.174 0.826 48 H 0.204 0.796 49 H 0.157 0.843 50 H 0.236 0.764 51 H -0.222 1.222 52 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges -1.469 -3.451 -1.582 4.070 hybrid contribution -0.834 0.748 -0.865 1.415 sum -2.303 -2.703 -2.447 4.312 Atomic orbital electron populations 1.22459 0.74663 1.05525 1.04832 1.43976 1.07678 1.04256 1.51869 1.19543 0.91647 0.83902 1.23778 1.19951 0.80959 0.88054 0.72428 1.90897 1.55639 1.47353 1.48490 1.86595 1.24619 1.31738 1.84177 1.23309 0.95902 0.77688 1.03079 1.22659 0.91453 0.99044 0.98723 0.87013 1.23566 0.98145 0.99614 0.97054 1.21799 0.81777 0.96780 0.96834 0.88574 1.44348 1.03949 1.62925 1.23017 1.18312 0.81775 0.77314 0.82631 1.90912 1.86406 1.49244 1.21743 1.86311 1.16441 1.75389 1.50211 1.22355 0.80264 0.96720 0.91507 1.22477 1.03804 0.94586 1.02889 1.21895 0.95216 1.01582 1.00802 1.22474 1.04311 1.00417 0.96543 1.23335 0.96379 0.95674 1.00511 1.21600 0.94155 0.95906 1.01040 1.21020 0.96114 0.94523 1.11313 1.21446 0.91360 0.89690 1.06439 1.25183 0.93663 0.93360 1.04816 1.86573 1.30118 1.88611 1.29848 0.93237 0.83120 0.73677 0.79090 0.89468 0.87911 0.88956 0.90619 0.90842 0.88354 0.91346 0.74571 0.91884 0.89465 0.91775 0.91181 0.88313 0.91129 0.91805 0.89461 0.91946 0.88616 0.86759 0.82625 0.79556 0.84345 0.76402 1.22202 1.21857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.16 9.32 127.77 1.19 1.03 16 2 N -0.40 -0.67 3.15 -520.21 -1.64 -2.31 16 3 C -0.08 -0.46 6.89 40.32 0.28 -0.18 16 4 C 0.54 4.25 7.92 69.97 0.55 4.80 16 5 O -0.53 -7.11 16.68 19.43 0.32 -6.78 16 6 O -0.35 -1.04 7.66 -58.08 -0.44 -1.49 16 7 C 0.07 -0.07 5.32 71.98 0.38 0.32 16 8 C -0.10 0.54 3.90 -10.27 -0.04 0.50 16 9 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 10 C -0.15 0.42 7.43 31.12 0.23 0.66 16 11 C 0.13 -0.29 4.33 45.52 0.20 -0.09 16 12 H 0.10 0.14 7.46 -2.39 -0.02 0.13 16 13 N -0.68 0.46 5.27 -567.60 -2.99 -2.53 16 14 C 0.65 3.88 8.06 129.79 1.05 4.92 16 15 O -0.59 -6.86 11.48 19.80 0.23 -6.63 16 16 O -0.37 -1.80 9.94 -55.44 -0.55 -2.35 16 17 C 0.13 0.33 1.13 -10.80 -0.01 0.32 16 18 C -0.18 -0.53 8.37 71.98 0.60 0.08 16 19 C -0.14 0.34 8.85 71.98 0.64 0.97 16 20 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 21 C -0.12 0.84 7.39 31.12 0.23 1.07 16 22 C -0.10 -0.38 10.66 22.59 0.24 -0.14 16 23 C -0.21 0.25 9.37 22.01 0.21 0.45 16 24 C 0.03 -0.03 6.13 41.44 0.25 0.23 16 25 C -0.06 0.28 2.87 71.24 0.20 0.48 16 26 O -0.54 1.61 10.37 -148.98 -1.55 0.06 16 27 Si 0.81 -4.36 31.10 68.60 2.13 -2.22 16 28 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.10 -0.33 6.80 -2.39 -0.02 -0.35 16 30 H 0.09 -0.15 6.16 -2.38 -0.01 -0.16 16 31 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 32 H 0.07 -0.01 7.84 -2.39 -0.02 -0.03 16 33 H 0.10 -0.30 7.90 -2.39 -0.02 -0.31 16 34 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.42 -2.19 8.81 -92.71 -0.82 -3.01 16 36 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 39 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 40 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 43 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 46 H 0.11 -0.94 8.10 -2.39 -0.02 -0.96 16 47 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 48 H 0.19 -1.53 6.85 -2.91 -0.02 -1.55 16 49 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 50 H 0.39 -2.80 8.70 -74.06 -0.64 -3.44 16 51 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 52 H -0.29 -0.18 7.11 99.48 0.71 0.53 16 Total: 0.00 -22.10 420.23 1.85 -20.26 By element: Atomic # 1 Polarization: -11.00 SS G_CDS: -0.48 Total: -11.47 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.80 Total: 15.46 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -4.63 Total: -4.84 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.99 Total: -17.19 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.13 Total: -2.22 kcal Total: -22.10 1.85 -20.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_15734084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.855 kcal (2) G-P(sol) polarization free energy of solvation -22.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds