Wall clock time and date at job start Sat Mar 6 2021 00:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37701 * 125.64040 * 2 1 4 4 C 1.46494 * 126.26105 * 359.93038 * 3 2 1 5 5 O 1.21623 * 120.00230 * 179.97438 * 4 3 2 6 6 O 1.34898 * 119.99792 * 359.97438 * 4 3 2 7 7 C 1.45200 * 117.00017 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47111 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47514 * 305.00709 * 8 7 6 10 10 C 1.53002 * 109.46637 * 65.00579 * 8 7 6 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 O 1.42900 * 109.47304 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 12 11 17 17 C 1.37992 * 107.47603 * 180.19200 * 3 2 1 18 18 C 1.39797 * 106.97091 * 359.64295 * 17 3 2 19 19 C 1.34965 * 125.63704 * 179.97438 * 2 1 3 20 20 C 1.50707 * 125.50148 * 0.02562 * 19 2 1 21 21 O 1.42896 * 109.47254 * 329.99325 * 20 19 2 22 22 Si 1.86304 * 109.46504 * 209.99467 * 20 19 2 23 23 H 1.08996 * 109.47228 * 90.02137 * 1 2 3 24 24 H 1.08992 * 109.47173 * 210.02684 * 1 2 3 25 25 H 1.09002 * 109.46372 * 330.02481 * 1 2 3 26 26 H 1.09008 * 109.46784 * 60.00509 * 7 6 4 27 27 H 1.09000 * 109.47295 * 300.00761 * 7 6 4 28 28 H 1.08993 * 109.47662 * 299.99908 * 10 8 7 29 29 H 1.09002 * 109.47075 * 60.00414 * 10 8 7 30 30 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 31 31 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 32 32 H 0.96700 * 113.99696 * 179.97438 * 14 12 11 33 33 H 1.08996 * 109.46929 * 179.97438 * 15 12 11 34 34 H 1.09002 * 109.46716 * 60.00455 * 15 12 11 35 35 H 1.09002 * 109.47153 * 299.99641 * 16 15 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 16 15 12 37 37 H 1.08000 * 126.51188 * 179.77434 * 17 3 2 38 38 H 1.07992 * 126.08207 * 180.17332 * 18 17 3 39 39 H 1.08998 * 109.47296 * 89.99828 * 20 19 2 40 40 H 0.96698 * 113.99849 * 180.02562 * 21 20 19 41 41 H 1.48498 * 110.00096 * 298.67872 * 22 20 19 42 42 H 1.48497 * 109.99843 * 60.00192 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2674 1.1191 0.0000 4 6 1.8123 2.5115 -0.0014 5 8 2.6245 3.4168 -0.0008 6 8 0.4923 2.7897 -0.0035 7 6 0.1140 4.1916 -0.0042 8 6 -1.4115 4.3081 -0.0072 9 1 -1.8172 3.7480 -0.8496 10 6 -1.9689 3.7393 1.2992 11 6 -3.4944 3.8564 1.2966 12 6 -3.8928 5.3283 1.1702 13 1 -3.4868 5.8882 2.0127 14 8 -5.3176 5.4377 1.1683 15 6 -3.3353 5.8971 -0.1361 16 6 -1.8098 5.7800 -0.1335 17 6 3.5785 0.6889 -0.0044 18 6 3.5494 -0.7088 0.0013 19 6 2.2514 -1.0969 0.0005 20 6 1.7642 -2.5230 0.0006 21 8 0.5059 -2.5965 0.6739 22 14 3.0027 -3.6022 0.8794 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8903 0.5135 26 1 0.5168 4.6760 -0.8938 27 1 0.5142 4.6764 0.8862 28 1 -1.6849 2.6909 1.3895 29 1 -1.5634 4.2995 2.1417 30 1 -3.9004 3.2965 0.4541 31 1 -3.8915 3.4516 2.2275 32 1 -5.6422 6.3453 1.0912 33 1 -3.6194 6.9455 -0.2264 34 1 -3.7412 5.3373 -0.9787 35 1 -1.4038 6.3399 0.7090 36 1 -1.4127 6.1849 -1.0644 37 1 4.4597 1.3134 -0.0090 38 1 4.4088 -1.3628 0.0025 39 1 1.6470 -2.8671 -1.0270 40 1 0.1319 -3.4874 0.7124 41 1 4.3069 -3.5594 0.1705 42 1 3.1714 -3.1434 2.2816 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_16737258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:24:07 Heat of formation + Delta-G solvation = -126.790740 kcal Electronic energy + Delta-G solvation = -24588.049564 eV Core-core repulsion = 20921.220830 eV Total energy + Delta-G solvation = -3666.828733 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.84756 -41.31159 -40.05211 -37.95549 -37.67637 -36.61872 -34.08924 -32.28067 -31.88976 -31.53410 -27.83979 -27.49422 -26.24042 -24.05658 -23.51078 -22.30513 -21.64208 -21.02888 -20.65385 -19.07862 -18.41144 -18.24715 -18.04400 -17.73602 -16.84057 -16.71052 -16.21725 -15.74435 -15.54586 -15.34966 -15.03923 -14.95192 -14.73207 -14.41184 -14.16184 -13.95732 -13.84945 -13.62898 -13.39090 -13.24696 -13.15948 -13.13207 -12.63528 -12.41096 -12.19465 -12.12730 -11.99981 -11.91451 -11.73452 -11.55889 -11.14846 -10.74758 -10.61230 -9.99068 -9.37000 -4.93230 -0.06350 1.06499 1.32119 1.44885 1.73826 1.79835 1.87021 2.11570 3.10297 3.16645 3.41502 3.51162 3.61455 3.62091 3.78726 3.89679 3.92347 4.10624 4.12599 4.23100 4.28145 4.32492 4.34139 4.39825 4.41774 4.44058 4.47532 4.49361 4.72267 4.76553 4.84409 4.91013 4.93636 5.01110 5.02735 5.09992 5.13407 5.15385 5.25748 5.39083 5.43412 5.69654 5.94936 6.49125 6.84088 6.84462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.395 5.395 3 C -0.076 4.076 4 C 0.542 3.458 5 O -0.532 6.532 6 O -0.350 6.350 7 C 0.069 3.931 8 C -0.079 4.079 9 H 0.086 0.914 10 C -0.107 4.107 11 C -0.112 4.112 12 C 0.100 3.900 13 H 0.060 0.940 14 O -0.589 6.589 15 C -0.143 4.143 16 C -0.109 4.109 17 C -0.102 4.102 18 C -0.237 4.237 19 C 0.072 3.928 20 C -0.059 4.059 21 O -0.562 6.562 22 Si 0.818 3.182 23 H 0.084 0.916 24 H 0.128 0.872 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.394 0.606 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.111 0.889 40 H 0.412 0.588 41 H -0.283 1.283 42 H -0.310 1.310 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -5.089 -1.210 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.068 5.068 3 C -0.186 4.186 4 C 0.389 3.611 5 O -0.422 6.422 6 O -0.267 6.267 7 C -0.005 4.005 8 C -0.098 4.098 9 H 0.104 0.896 10 C -0.144 4.144 11 C -0.149 4.149 12 C 0.041 3.959 13 H 0.078 0.922 14 O -0.398 6.398 15 C -0.181 4.181 16 C -0.146 4.146 17 C -0.128 4.128 18 C -0.260 4.260 19 C -0.049 4.049 20 C -0.167 4.167 21 O -0.374 6.374 22 Si 0.722 3.278 23 H 0.102 0.898 24 H 0.146 0.854 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.129 0.871 40 H 0.266 0.734 41 H -0.210 1.210 42 H -0.238 1.238 Dipole moment (debyes) X Y Z Total from point charges -3.438 -4.767 -0.694 5.919 hybrid contribution 0.216 1.682 -0.315 1.725 sum -3.223 -3.085 -1.008 4.574 Atomic orbital electron populations 1.22801 0.73848 1.06965 1.04921 1.44060 1.08185 1.03817 1.50760 1.19529 0.91404 0.84337 1.23356 1.19816 0.81092 0.87733 0.72459 1.90891 1.55674 1.47235 1.48406 1.86585 1.24288 1.31739 1.84076 1.23355 0.96614 0.77530 1.02961 1.21222 0.90656 0.98130 0.99782 0.89586 1.21507 0.94155 1.01882 0.96884 1.21456 0.95525 0.95239 1.02697 1.21904 0.80405 0.96840 0.96725 0.92243 1.86484 1.21624 1.34724 1.96964 1.22179 0.95393 1.02200 0.98337 1.21452 0.95641 0.94057 1.03484 1.21490 0.94636 0.95215 1.01459 1.20813 0.95895 0.95090 1.14244 1.20722 0.90547 0.89031 1.04645 1.24733 0.95222 0.92928 1.03858 1.86252 1.34488 1.37505 1.79133 0.94422 0.75201 0.83572 0.74590 0.89774 0.85431 0.89000 0.90875 0.91044 0.90947 0.91451 0.91582 0.91641 0.75671 0.90080 0.91454 0.90752 0.90388 0.82638 0.82377 0.87114 0.73405 1.21050 1.23827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.03 10.22 127.77 1.31 1.33 16 2 N -0.39 -2.45 3.15 -520.20 -1.64 -4.08 16 3 C -0.08 -0.78 6.89 40.32 0.28 -0.51 16 4 C 0.54 6.05 7.92 69.97 0.55 6.61 16 5 O -0.53 -8.67 16.68 19.43 0.32 -8.35 16 6 O -0.35 -2.02 7.20 -58.13 -0.42 -2.44 16 7 C 0.07 0.15 4.85 71.98 0.35 0.50 16 8 C -0.08 0.15 2.44 -10.79 -0.03 0.12 16 9 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 10 C -0.11 0.15 5.10 30.59 0.16 0.31 16 11 C -0.11 0.01 5.57 30.60 0.17 0.18 16 12 C 0.10 -0.09 3.47 30.60 0.11 0.01 16 13 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 14 O -0.59 -0.93 13.32 -148.98 -1.98 -2.92 16 15 C -0.14 0.49 5.55 30.59 0.17 0.66 16 16 C -0.11 0.41 5.20 30.59 0.16 0.57 16 17 C -0.10 -0.99 10.66 22.59 0.24 -0.75 16 18 C -0.24 -1.58 9.37 22.01 0.21 -1.37 16 19 C 0.07 0.33 6.16 41.44 0.26 0.58 16 20 C -0.06 0.25 2.97 71.24 0.21 0.46 16 21 O -0.56 3.70 9.71 -148.98 -1.45 2.25 16 22 Si 0.82 -4.13 31.22 68.60 2.14 -1.99 16 23 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.13 -0.21 5.18 -2.39 -0.01 -0.23 16 25 H 0.09 0.08 6.15 -2.39 -0.01 0.06 16 26 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 27 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.07 -0.06 7.82 -2.39 -0.02 -0.07 16 29 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.39 -2.50 9.08 -74.06 -0.67 -3.17 16 33 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.16 0.57 6.69 -2.91 -0.02 0.55 16 39 H 0.11 -0.99 7.96 -2.39 -0.02 -1.01 16 40 H 0.41 -7.13 8.74 -74.06 -0.65 -7.78 16 41 H -0.28 -0.03 6.87 99.48 0.68 0.66 16 42 H -0.31 -1.49 7.11 99.48 0.71 -0.78 16 Total: 0.00 -21.58 339.00 0.84 -20.73 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.27 Total: -11.93 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.14 Total: 8.72 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -1.64 Total: -4.08 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -3.53 Total: -11.45 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.14 Total: -1.99 kcal Total: -21.58 0.84 -20.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_16737258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.058 kcal (2) G-P(sol) polarization free energy of solvation -21.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds