Wall clock time and date at job start Sat Mar 6 2021 00:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00425 * 2 1 4 4 C 1.53005 * 112.84970 * 294.01987 * 3 2 1 5 5 F 1.39899 * 109.47142 * 195.88804 * 4 3 2 6 6 F 1.39901 * 109.47024 * 315.88389 * 4 3 2 7 7 F 1.39898 * 109.47201 * 75.88580 * 4 3 2 8 8 C 1.53779 * 113.69438 * 162.74967 * 3 2 1 9 9 C 1.53778 * 87.08122 * 270.87458 * 8 3 2 10 10 H 1.09000 * 113.61491 * 220.01505 * 9 8 3 11 11 C 1.53000 * 113.61687 * 89.11230 * 9 8 3 12 12 O 1.45206 * 109.47100 * 87.50404 * 11 9 8 13 13 C 1.34893 * 116.99957 * 180.02562 * 12 11 9 14 14 O 1.21623 * 120.00245 * 359.97438 * 13 12 11 15 15 C 1.46494 * 119.99624 * 180.02562 * 13 12 11 16 16 C 1.37993 * 126.25723 * 179.68835 * 15 13 12 17 17 C 1.39801 * 106.96705 * 179.90043 * 16 15 13 18 18 C 1.35485 * 107.84181 * 0.36152 * 17 16 15 19 19 C 1.50694 * 125.51020 * 179.79143 * 18 17 16 20 20 O 1.42904 * 109.47462 * 209.97521 * 19 18 17 21 21 Si 1.86302 * 109.47279 * 329.97659 * 19 18 17 22 22 N 1.34961 * 108.98438 * 359.77432 * 18 17 16 23 23 C 1.46500 * 125.63856 * 179.97438 * 22 18 17 24 24 C 1.53783 * 87.08181 * 334.56354 * 9 8 3 25 25 H 1.09005 * 109.46525 * 304.84298 * 1 2 3 26 26 H 1.09001 * 109.47470 * 64.83730 * 1 2 3 27 27 H 1.08999 * 109.47241 * 184.84184 * 1 2 3 28 28 H 1.08998 * 113.61643 * 156.32761 * 8 3 2 29 29 H 1.09003 * 113.61084 * 25.42199 * 8 3 2 30 30 H 1.08998 * 109.47496 * 207.50639 * 11 9 8 31 31 H 1.09004 * 109.46955 * 327.50408 * 11 9 8 32 32 H 1.08003 * 126.52109 * 0.03367 * 16 15 13 33 33 H 1.07998 * 126.08160 * 180.09657 * 17 16 15 34 34 H 1.09006 * 109.47181 * 89.97583 * 19 18 17 35 35 H 0.96703 * 114.00098 * 180.02562 * 20 19 18 36 36 H 1.48502 * 109.99956 * 178.67803 * 21 19 18 37 37 H 1.48496 * 110.00117 * 299.99843 * 21 19 18 38 38 H 1.08999 * 109.47355 * 270.01969 * 23 22 18 39 39 H 1.09006 * 109.46858 * 30.01615 * 23 22 18 40 40 H 1.08999 * 109.47501 * 150.01366 * 23 22 18 41 41 H 1.09000 * 113.61119 * 139.98089 * 24 9 8 42 42 H 1.09001 * 113.61603 * 270.80091 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 1.7277 2.0816 -1.2879 5 9 2.6016 3.1703 -1.3774 6 9 1.9160 1.2407 -2.3900 7 9 0.4072 2.5434 -1.2738 8 6 3.4902 1.3228 0.4176 9 6 2.9983 1.4839 1.8656 10 1 3.5947 2.1809 2.4544 11 6 2.7568 0.1539 2.5825 12 8 3.9922 -0.2945 3.1999 13 6 3.9505 -1.4607 3.8764 14 8 2.9093 -2.0853 3.9483 15 6 5.1592 -1.9745 4.5255 16 6 5.2614 -3.1433 5.2519 17 6 6.5877 -3.2409 5.6831 18 6 7.2529 -2.1513 5.2295 19 6 8.7103 -1.8526 5.4699 20 8 8.9087 -0.4377 5.4958 21 14 9.2329 -2.5829 7.1022 22 7 6.3995 -1.3767 4.5273 23 6 6.7369 -0.1089 3.8752 24 6 1.7212 2.1084 1.2792 25 1 -0.3632 0.5872 0.8435 26 1 -0.3634 0.4369 -0.9301 27 1 -0.3634 -1.0240 0.0867 28 1 4.0391 2.1873 0.0442 29 1 4.0067 0.3806 0.2342 30 1 1.9947 0.2881 3.3502 31 1 2.4194 -0.5911 1.8619 32 1 4.4683 -3.8496 5.4480 33 1 7.0064 -4.0404 6.2763 34 1 9.3075 -2.2886 4.6690 35 1 9.8262 -0.1718 5.6464 36 1 10.6761 -2.3228 7.3362 37 1 8.4262 -1.9966 8.2025 38 1 6.5746 0.7129 4.5725 39 1 7.7831 -0.1248 3.5694 40 1 6.1042 0.0283 2.9982 41 1 0.8097 1.8005 1.7915 42 1 1.7860 3.1879 1.1427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_17321610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:49:12 Heat of formation + Delta-G solvation = -216.882266 kcal Electronic energy + Delta-G solvation = -32342.092709 eV Core-core repulsion = 27262.995387 eV Total energy + Delta-G solvation = -5079.097322 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.122 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.28460 -48.81557 -48.75724 -42.69225 -41.68677 -40.77221 -37.94086 -37.74085 -36.93567 -33.93330 -31.86936 -30.69921 -28.33885 -27.86008 -27.46005 -26.83309 -26.58234 -23.81048 -23.18942 -21.47290 -20.84071 -20.48077 -19.81515 -19.57469 -19.27817 -18.92597 -18.48765 -17.94976 -17.69130 -17.25863 -16.73054 -16.60837 -16.49048 -15.86211 -15.70912 -15.64810 -15.58315 -15.37084 -15.19913 -14.98910 -14.92226 -14.73585 -14.54650 -14.44236 -14.26710 -14.04009 -13.77219 -13.62561 -13.39231 -13.26618 -13.19394 -12.99402 -12.83866 -12.66167 -12.43244 -12.16487 -12.05091 -11.84562 -11.74891 -11.64014 -10.85175 -10.77795 -9.80260 -9.19912 -4.83449 0.07583 1.15443 1.38593 1.49693 1.62168 1.67398 1.87420 2.03555 2.05377 2.09969 2.53012 2.58923 2.84172 3.10270 3.23153 3.25762 3.40592 3.55615 3.65182 3.81743 3.97798 4.17936 4.18332 4.21838 4.30634 4.33912 4.39037 4.44544 4.46255 4.46580 4.56265 4.58901 4.64157 4.73574 4.76873 4.78223 4.93016 4.98214 5.14851 5.25902 5.65940 5.67244 5.87776 6.10071 6.53656 6.60212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.348 6.348 3 C 0.032 3.968 4 C 0.434 3.566 5 F -0.174 7.174 6 F -0.188 7.188 7 F -0.185 7.185 8 C -0.111 4.111 9 C -0.091 4.091 10 H 0.124 0.876 11 C 0.076 3.924 12 O -0.352 6.352 13 C 0.540 3.460 14 O -0.532 6.532 15 C -0.082 4.082 16 C -0.099 4.099 17 C -0.212 4.212 18 C 0.068 3.932 19 C -0.063 4.063 20 O -0.558 6.558 21 Si 0.797 3.203 22 N -0.403 5.403 23 C 0.074 3.926 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.189 0.811 34 H 0.111 0.889 35 H 0.402 0.598 36 H -0.277 1.277 37 H -0.310 1.310 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 0.695 1.789 5.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.011 4.011 4 C 0.379 3.621 5 F -0.156 7.156 6 F -0.170 7.170 7 F -0.166 7.166 8 C -0.148 4.148 9 C -0.109 4.109 10 H 0.142 0.858 11 C 0.003 3.997 12 O -0.269 6.269 13 C 0.388 3.612 14 O -0.422 6.422 15 C -0.192 4.192 16 C -0.125 4.125 17 C -0.234 4.234 18 C -0.052 4.052 19 C -0.171 4.171 20 O -0.369 6.369 21 Si 0.701 3.299 22 N -0.077 5.077 23 C -0.066 4.066 24 C -0.172 4.172 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.206 0.794 34 H 0.128 0.872 35 H 0.254 0.746 36 H -0.203 1.203 37 H -0.238 1.238 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.736 0.918 2.199 5.301 hybrid contribution -0.357 1.395 -0.912 1.705 sum 4.378 2.313 1.287 5.116 Atomic orbital electron populations 1.23260 0.78745 1.05183 1.01770 1.88081 1.22091 1.22638 1.93841 1.24236 1.00810 0.86241 0.89777 1.21466 0.74166 0.78697 0.87725 1.93172 1.69304 1.56456 1.96623 1.93189 1.94863 1.71330 1.57581 1.93183 1.36860 1.89712 1.96849 1.23354 0.90456 1.05915 0.95078 1.22041 0.98248 0.95421 0.95226 0.85834 1.23106 0.83515 0.96275 0.96788 1.86545 1.39551 1.37491 1.63338 1.19913 0.87073 0.78740 0.75515 1.90892 1.32065 1.59200 1.60051 1.19514 0.84714 1.00180 1.14762 1.21580 0.98346 0.95061 0.97548 1.20962 0.92904 1.00976 1.08602 1.20509 0.92400 0.93559 0.98730 1.24786 0.91979 0.86337 1.14042 1.86505 1.35328 1.20207 1.94815 0.93381 0.75980 0.89434 0.71135 1.43981 1.06912 1.18621 1.38175 1.22367 1.03898 0.81953 0.98363 1.23655 0.99664 1.01726 0.92151 0.91235 0.93396 0.87294 0.85018 0.89197 0.90614 0.90224 0.82418 0.79425 0.87161 0.74569 1.20335 1.23753 0.90528 0.87728 0.88717 0.87949 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 -0.90 8.37 -148.98 -1.25 -2.15 16 3 C 0.03 -0.02 0.84 -10.26 -0.01 -0.03 16 4 C 0.43 1.09 2.52 71.98 0.18 1.27 16 5 F -0.17 -0.30 15.81 44.97 0.71 0.41 16 6 F -0.19 -1.28 17.10 44.97 0.77 -0.51 16 7 F -0.18 -0.59 15.39 44.97 0.69 0.10 16 8 C -0.11 0.35 6.89 31.12 0.21 0.57 16 9 C -0.09 0.39 4.21 -10.27 -0.04 0.35 16 10 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C 0.08 0.11 5.06 71.98 0.36 0.48 16 12 O -0.35 -1.62 7.65 -58.07 -0.44 -2.06 16 13 C 0.54 5.22 7.92 69.97 0.55 5.78 16 14 O -0.53 -7.93 16.68 19.43 0.32 -7.61 16 15 C -0.08 -0.64 6.88 40.32 0.28 -0.36 16 16 C -0.10 -0.54 10.66 22.59 0.24 -0.30 16 17 C -0.21 -0.12 9.37 22.01 0.21 0.09 16 18 C 0.07 0.09 6.16 41.44 0.26 0.35 16 19 C -0.06 0.30 2.87 71.23 0.20 0.51 16 20 O -0.56 2.26 10.32 -148.98 -1.54 0.73 16 21 Si 0.80 -4.32 31.10 68.60 2.13 -2.18 16 22 N -0.40 -1.68 3.15 -520.21 -1.64 -3.31 16 23 C 0.07 -0.03 9.33 127.77 1.19 1.16 16 24 C -0.13 0.70 6.51 31.12 0.20 0.91 16 25 H 0.07 -0.28 6.55 -2.38 -0.02 -0.30 16 26 H 0.05 0.01 6.69 -2.39 -0.02 -0.01 16 27 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.13 -0.82 7.02 -2.39 -0.02 -0.83 16 29 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 30 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.08 0.37 6.12 -2.38 -0.01 0.35 16 32 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 33 H 0.19 -1.30 6.85 -2.91 -0.02 -1.32 16 34 H 0.11 -1.04 7.96 -2.38 -0.02 -1.06 16 35 H 0.40 -4.86 8.74 -74.06 -0.65 -5.51 16 36 H -0.28 0.62 7.11 99.48 0.71 1.33 16 37 H -0.31 -1.37 7.11 99.48 0.71 -0.66 16 38 H 0.08 -0.02 8.14 -2.39 -0.02 -0.03 16 39 H 0.10 -0.32 6.77 -2.38 -0.02 -0.34 16 40 H 0.09 -0.10 6.15 -2.39 -0.01 -0.11 16 41 H 0.10 -0.64 6.63 -2.39 -0.02 -0.65 16 42 H 0.13 -1.05 8.05 -2.39 -0.02 -1.07 16 Total: 0.00 -20.78 355.55 5.25 -15.53 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: 0.48 Total: -10.86 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.01 Total: 11.92 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -1.64 Total: -3.31 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -2.90 Total: -11.09 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 2.17 Total: 0.00 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: 2.13 Total: -2.18 kcal Total: -20.78 5.25 -15.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_17321610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.357 kcal (2) G-P(sol) polarization free energy of solvation -20.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds