Wall clock time and date at job start Sat Mar 6 2021 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37702 * 125.63389 * 2 1 4 4 C 1.46494 * 126.26053 * 359.97438 * 3 2 1 5 5 O 1.21625 * 119.99664 * 179.97438 * 4 3 2 6 6 O 1.34887 * 120.00288 * 359.97438 * 4 3 2 7 7 C 1.45204 * 117.00232 * 179.97438 * 6 4 3 8 8 Si 1.86301 * 109.46914 * 74.99600 * 7 6 4 9 9 C 1.86302 * 109.46976 * 60.00402 * 8 7 6 10 10 C 1.86304 * 109.46807 * 180.02562 * 8 7 6 11 11 C 1.86300 * 109.47323 * 300.00055 * 8 7 6 12 12 C 1.37989 * 107.47406 * 179.97438 * 3 2 1 13 13 C 1.39805 * 106.96991 * 0.02562 * 12 3 2 14 14 C 1.34956 * 125.63723 * 179.97438 * 2 1 3 15 15 C 1.50697 * 125.50807 * 0.05513 * 14 2 1 16 16 O 1.42902 * 109.47289 * 29.98460 * 15 14 2 17 17 Si 1.86303 * 109.47500 * 149.98109 * 15 14 2 18 18 H 1.48503 * 109.46461 * 60.00071 * 17 15 14 19 19 H 1.48492 * 109.47408 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47263 * 300.00437 * 17 15 14 21 21 H 1.09001 * 109.47277 * 90.02488 * 1 2 3 22 22 H 1.09002 * 109.46543 * 210.02279 * 1 2 3 23 23 H 1.08995 * 109.46992 * 330.02368 * 1 2 3 24 24 H 1.08992 * 109.47100 * 194.99550 * 7 6 4 25 25 H 1.08997 * 109.46515 * 315.00232 * 7 6 4 26 26 H 1.09002 * 109.47393 * 60.00229 * 9 8 7 27 27 H 1.09005 * 109.47108 * 180.02562 * 9 8 7 28 28 H 1.08997 * 109.47097 * 299.99441 * 9 8 7 29 29 H 1.08992 * 109.47048 * 60.00152 * 10 8 7 30 30 H 1.09004 * 109.46900 * 180.02562 * 10 8 7 31 31 H 1.09002 * 109.46919 * 299.99653 * 10 8 7 32 32 H 1.09003 * 109.46571 * 60.00457 * 11 8 7 33 33 H 1.09004 * 109.46775 * 179.97438 * 11 8 7 34 34 H 1.08992 * 109.47355 * 300.00352 * 11 8 7 35 35 H 1.08004 * 126.51751 * 180.02562 * 12 3 2 36 36 H 1.07995 * 126.07695 * 179.74022 * 13 12 3 37 37 H 1.08996 * 109.47645 * 269.98439 * 15 14 2 38 38 H 0.96703 * 114.00055 * 60.00036 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2673 1.1192 0.0000 4 6 1.8120 2.5116 -0.0005 5 8 2.6242 3.4169 0.0000 6 8 0.4921 2.7897 -0.0016 7 6 0.1137 4.1915 -0.0015 8 14 0.3925 4.9101 -1.6976 9 6 -0.6438 3.9873 -2.9409 10 6 -0.0923 6.7089 -1.6972 11 6 2.1927 4.7528 -2.1506 12 6 3.5784 0.6891 0.0006 13 6 3.5494 -0.7086 0.0003 14 6 2.2514 -1.0968 0.0005 15 6 1.7643 -2.5229 -0.0001 16 8 0.5066 -2.5965 -0.6744 17 14 3.0035 -3.6021 -0.8779 18 1 4.3106 -3.5256 -0.1771 19 1 2.5239 -5.0074 -0.8779 20 1 3.1643 -3.1334 -2.2778 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3632 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 -0.9395 4.2835 0.2635 25 1 0.7201 4.7313 0.7259 26 1 -1.6971 4.0794 -2.6759 27 1 -0.4804 4.4074 -3.9333 28 1 -0.3597 2.9350 -2.9410 29 1 0.5142 7.2485 -0.9700 30 1 0.0703 7.1292 -2.6898 31 1 -1.1455 6.8013 -1.4321 32 1 2.4766 3.7004 -2.1507 33 1 2.3556 5.1728 -3.1432 34 1 2.7989 5.2926 -1.4233 35 1 4.4597 1.3136 0.0011 36 1 4.4089 -1.3626 -0.0033 37 1 1.6464 -2.8670 1.0274 38 1 0.5367 -2.3050 -1.5959 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_10804116_4858416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:07:38 Heat of formation + Delta-G solvation = -94.152418 kcal Electronic energy + Delta-G solvation = -19690.749130 eV Core-core repulsion = 16658.650168 eV Total energy + Delta-G solvation = -3032.098962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.73765 -41.04928 -37.79885 -37.42296 -33.95883 -31.68803 -29.70220 -28.54790 -28.39055 -28.35876 -27.47126 -26.47646 -23.48203 -21.50086 -20.76304 -19.00430 -18.36899 -17.88449 -17.59369 -16.69897 -16.25612 -15.50058 -15.39329 -14.88268 -14.68611 -14.55299 -14.33106 -14.08621 -13.98536 -13.85277 -13.75034 -13.44993 -13.30627 -13.25659 -13.10590 -13.07333 -12.87809 -12.56096 -12.35438 -12.04953 -11.91049 -11.72473 -10.88018 -10.79613 -10.71497 -10.42791 -9.84120 -9.25555 0.09162 1.04928 1.40995 1.47476 1.55496 1.58857 1.62551 1.83190 1.86430 2.02663 2.04233 2.11585 2.54565 3.32764 3.50628 3.75494 3.96013 4.21982 4.31854 4.41698 4.51778 4.55745 4.66791 4.72395 4.75742 4.78336 4.79789 4.80365 4.82071 4.85882 4.93347 5.03760 5.24835 5.49942 5.56747 5.58611 5.62775 5.83078 6.07810 6.54434 6.68160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.399 5.399 3 C -0.072 4.072 4 C 0.521 3.479 5 O -0.510 6.510 6 O -0.337 6.337 7 C -0.256 4.256 8 Si 1.057 2.943 9 C -0.450 4.450 10 C -0.451 4.451 11 C -0.458 4.458 12 C -0.106 4.106 13 C -0.225 4.225 14 C 0.033 3.967 15 C -0.059 4.059 16 O -0.547 6.547 17 Si 1.012 2.988 18 H -0.251 1.251 19 H -0.266 1.266 20 H -0.263 1.263 21 H 0.094 0.906 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.135 0.865 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -2.226 -1.058 4.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.073 5.073 3 C -0.182 4.182 4 C 0.367 3.633 5 O -0.400 6.400 6 O -0.254 6.254 7 C -0.373 4.373 8 Si 1.249 2.751 9 C -0.558 4.558 10 C -0.559 4.559 11 C -0.562 4.562 12 C -0.132 4.132 13 C -0.249 4.249 14 C -0.087 4.087 15 C -0.169 4.169 16 O -0.354 6.354 17 Si 0.834 3.166 18 H -0.174 1.174 19 H -0.190 1.190 20 H -0.187 1.187 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.110 0.890 24 H 0.153 0.847 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.508 -2.628 -0.856 4.466 hybrid contribution 0.237 0.904 -0.021 0.935 sum -3.271 -1.723 -0.877 3.800 Atomic orbital electron populations 1.22592 0.74145 1.05851 1.05443 1.44001 1.07905 1.03991 1.51401 1.19541 0.91404 0.84227 1.23072 1.19945 0.81578 0.88027 0.73719 1.90891 1.55323 1.46612 1.47163 1.86514 1.24307 1.30531 1.84003 1.28699 1.05501 0.81883 1.21235 0.78835 0.65356 0.67135 0.63762 1.26102 1.09998 1.08044 1.11667 1.26072 1.06371 1.18376 1.05116 1.26570 1.21773 1.03376 1.04529 1.21505 0.94406 0.95597 1.01679 1.20972 0.96253 0.94855 1.12785 1.21455 0.90912 0.90246 1.06120 1.25005 0.94447 0.92566 1.04867 1.86484 1.29669 1.89055 1.30179 0.84790 0.76270 0.76807 0.78752 1.17429 1.19014 1.18712 0.88755 0.87265 0.88988 0.84660 0.90836 0.89871 0.90753 0.91826 0.91204 0.90456 0.89832 0.93296 0.91679 0.92074 0.83054 0.81625 0.84332 0.76077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.17 9.33 127.77 1.19 1.02 16 2 N -0.40 -0.91 3.15 -520.20 -1.64 -2.55 16 3 C -0.07 -0.50 6.89 40.32 0.28 -0.22 16 4 C 0.52 4.27 6.69 69.97 0.47 4.74 16 5 O -0.51 -6.24 12.59 19.43 0.24 -5.99 16 6 O -0.34 -1.22 7.35 -58.01 -0.43 -1.64 16 7 C -0.26 0.11 5.40 113.37 0.61 0.73 16 8 Si 1.06 -2.48 12.12 68.60 0.83 -1.65 16 9 C -0.45 1.19 8.65 113.37 0.98 2.17 16 10 C -0.45 1.41 8.65 113.37 0.98 2.39 16 11 C -0.46 -2.29 7.10 113.37 0.80 -1.48 16 12 C -0.11 -0.66 10.66 22.59 0.24 -0.41 16 13 C -0.23 -0.50 9.37 22.01 0.21 -0.29 16 14 C 0.03 0.02 6.13 41.44 0.25 0.27 16 15 C -0.06 0.27 2.87 71.23 0.20 0.47 16 16 O -0.55 2.74 10.35 -148.98 -1.54 1.20 16 17 Si 1.01 -4.28 26.54 68.60 1.82 -2.46 16 18 H -0.25 0.87 6.79 99.48 0.68 1.54 16 19 H -0.27 0.45 7.11 99.48 0.71 1.15 16 20 H -0.26 0.53 7.11 99.48 0.71 1.24 16 21 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 22 H 0.11 -0.48 6.77 -2.39 -0.02 -0.50 16 23 H 0.09 -0.17 6.15 -2.39 -0.01 -0.19 16 24 H 0.14 -0.81 7.96 -2.39 -0.02 -0.83 16 25 H 0.07 0.12 7.53 -2.39 -0.02 0.10 16 26 H 0.08 -0.40 7.96 -2.39 -0.02 -0.41 16 27 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 28 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.08 -0.24 7.96 -2.38 -0.02 -0.26 16 31 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.05 0.41 6.27 -2.39 -0.01 0.40 16 33 H 0.06 0.22 7.96 -2.38 -0.02 0.20 16 34 H 0.06 0.49 7.42 -2.39 -0.02 0.47 16 35 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.17 -0.29 6.63 -2.91 -0.02 -0.31 16 37 H 0.14 -0.94 7.96 -2.39 -0.02 -0.96 16 38 H 0.39 -3.95 8.70 -74.06 -0.64 -4.59 16 Total: 0.00 -14.00 312.19 6.65 -7.35 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: 1.13 Total: -3.64 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.22 Total: 9.38 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: -1.64 Total: -2.55 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.72 Total: -6.44 kcal Atomic # 14 Polarization: -6.76 SS G_CDS: 2.65 Total: -4.11 kcal Total: -14.00 6.65 -7.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_10804116_4858416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.797 kcal (2) G-P(sol) polarization free energy of solvation -14.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds