Wall clock time and date at job start Sat Mar 6 2021 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46952 * 2 1 4 4 C 1.52996 * 109.47131 * 120.00306 * 2 1 3 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46991 * 299.99311 * 5 4 2 7 7 H 1.08993 * 109.47839 * 300.00447 * 6 5 4 8 8 C 1.50698 * 109.46824 * 179.97438 * 6 5 4 9 9 O 1.20825 * 119.99963 * 240.00151 * 8 6 5 10 10 O 1.34225 * 119.99990 * 60.00712 * 8 6 5 11 11 C 1.45205 * 116.99943 * 179.97438 * 10 8 6 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 8 13 13 C 1.38940 * 120.03889 * 180.02562 * 12 11 10 14 14 O 1.34886 * 120.98602 * 359.95163 * 13 12 11 15 15 C 1.33713 * 122.41122 * 179.97438 * 14 13 12 16 16 C 1.34541 * 122.85586 * 0.04698 * 15 14 13 17 17 C 1.50699 * 120.20073 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47087 * 249.97747 * 17 16 15 19 19 Si 1.86295 * 109.47185 * 9.97877 * 17 16 15 20 20 C 1.42001 * 119.59688 * 359.97438 * 16 15 14 21 21 O 1.21912 * 121.41040 * 179.97438 * 20 16 15 22 22 C 1.40452 * 119.33866 * 179.97438 * 13 12 11 23 23 C 1.39344 * 120.23710 * 0.02562 * 22 13 12 24 24 C 1.37891 * 119.52751 * 0.02562 * 23 22 13 25 25 Br 1.89102 * 119.86336 * 180.02562 * 24 23 22 26 26 C 1.37868 * 120.04134 * 359.71893 * 12 11 10 27 27 C 1.53006 * 109.46626 * 60.00378 * 6 5 4 28 28 C 1.52997 * 109.47127 * 299.99539 * 27 6 5 29 29 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99744 * 1 2 3 31 31 H 1.09002 * 109.47153 * 59.99828 * 1 2 3 32 32 H 1.09001 * 109.46993 * 300.00131 * 4 2 1 33 33 H 1.09000 * 109.47380 * 59.99237 * 4 2 1 34 34 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 35 35 H 1.08993 * 109.47194 * 60.00154 * 5 4 2 36 36 H 1.09004 * 109.47173 * 299.99484 * 11 10 8 37 37 H 1.08993 * 109.47243 * 59.99977 * 11 10 8 38 38 H 1.07997 * 118.57245 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46937 * 129.98088 * 17 16 15 40 40 H 0.96703 * 113.99989 * 60.00148 * 18 17 16 41 41 H 1.48501 * 110.00028 * 58.67870 * 19 17 16 42 42 H 1.48502 * 110.00009 * 179.97438 * 19 17 16 43 43 H 1.08007 * 120.23733 * 180.02562 * 23 22 13 44 44 H 1.08005 * 119.64685 * 0.02562 * 26 12 11 45 45 H 1.09001 * 109.46801 * 59.99811 * 27 6 5 46 46 H 1.09001 * 109.46998 * 179.97438 * 27 6 5 47 47 H 1.09002 * 109.47153 * 180.02562 * 28 27 6 48 48 H 1.08996 * 109.46952 * 300.00302 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7219 1.2488 6 6 4.0794 -1.4436 -0.0003 7 1 3.7157 -2.4710 -0.0002 8 6 5.5864 -1.4435 -0.0009 9 8 6.1901 -0.9206 -0.9075 10 8 6.2579 -2.0245 1.0056 11 6 7.7079 -1.9870 0.9389 12 6 8.2844 -2.6835 2.1446 13 6 9.6617 -2.7750 2.3026 14 8 10.5021 -2.2483 1.3883 15 6 11.8316 -2.3194 1.5120 16 6 12.4368 -2.9200 2.5527 17 6 13.9410 -2.9659 2.6315 18 8 14.3882 -4.3069 2.4227 19 14 14.6656 -1.8584 1.3204 20 6 11.6495 -3.5103 3.5765 21 8 12.1631 -4.0633 4.5339 22 6 10.1831 -3.4268 3.4321 23 6 9.3257 -3.9761 4.3834 24 6 7.9618 -3.8755 4.2076 25 35 6.7895 -4.6168 5.4930 26 6 7.4457 -3.2251 3.0955 27 6 3.5694 -0.7222 -1.2496 28 6 2.0394 -0.7217 -1.2493 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6766 -0.2075 2.1392 33 1 1.6765 -1.7489 1.2492 34 1 3.9333 -1.2353 2.1390 35 1 3.9336 0.3056 1.2487 36 1 8.0432 -2.4923 0.0331 37 1 8.0442 -0.9504 0.9224 38 1 12.4463 -1.8758 0.7428 39 1 14.2639 -2.6242 3.6149 40 1 14.1360 -4.6767 1.5655 41 1 14.1827 -0.4666 1.5075 42 1 16.1486 -1.8943 1.3880 43 1 9.7267 -4.4770 5.2523 44 1 6.3757 -3.1474 2.9705 45 1 3.9331 0.3053 -1.2497 46 1 3.9326 -1.2361 -2.1396 47 1 1.6760 -0.2082 -2.1395 48 1 1.6757 -1.7492 -1.2490 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_11733144_484008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:03:26 Heat of formation + Delta-G solvation = -144.038452 kcal Electronic energy + Delta-G solvation = -34015.397141 eV Core-core repulsion = 29241.841645 eV Total energy + Delta-G solvation = -4773.555496 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.065 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.35585 -41.89469 -40.06470 -40.02326 -39.42111 -37.88852 -37.58045 -34.64045 -34.03166 -33.60393 -33.09520 -31.87987 -30.71256 -28.86217 -27.66285 -27.48549 -25.86646 -24.46468 -23.89382 -23.74962 -22.43005 -21.64996 -20.86079 -20.66180 -19.54474 -19.07749 -18.53506 -18.00804 -17.80976 -17.60023 -17.44499 -16.69236 -16.48145 -16.27935 -16.12549 -16.02193 -15.47676 -15.39840 -15.37084 -15.25189 -15.12830 -14.86585 -14.48818 -14.36409 -14.19136 -14.11534 -13.97415 -13.65476 -13.37134 -13.32718 -13.16376 -12.80049 -12.57479 -12.44790 -12.28719 -12.19777 -12.14391 -12.09671 -11.84844 -11.81439 -11.50140 -11.47312 -11.21933 -11.15220 -11.11751 -10.70246 -10.45861 -10.41545 -9.56637 -5.33570 -0.82391 -0.69856 0.00961 0.36087 0.90329 1.02068 1.09619 1.33665 1.37779 1.46179 1.79755 2.33017 2.71077 2.85981 3.10705 3.19012 3.35343 3.41363 3.50355 3.54558 3.62580 3.73129 3.80865 3.88621 3.91832 3.95469 4.00042 4.03439 4.06986 4.21226 4.26403 4.26858 4.29239 4.39337 4.46311 4.52136 4.58429 4.63465 4.66172 4.74090 4.78943 4.81465 4.85468 4.95374 5.00980 5.01564 5.07853 5.11634 5.23989 5.26820 5.27665 5.43018 5.72258 6.42937 6.49988 6.61232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.077 4.077 7 H 0.111 0.889 8 C 0.469 3.531 9 O -0.499 6.499 10 O -0.355 6.355 11 C 0.117 3.883 12 C -0.105 4.105 13 C 0.162 3.838 14 O -0.212 6.212 15 C 0.142 3.858 16 C -0.314 4.314 17 C -0.039 4.039 18 O -0.529 6.529 19 Si 0.674 3.326 20 C 0.433 3.567 21 O -0.440 6.440 22 C -0.211 4.211 23 C 0.002 3.998 24 C -0.120 4.120 25 Br -0.024 7.024 26 C -0.012 4.012 27 C -0.105 4.105 28 C -0.114 4.114 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.202 0.798 39 H 0.121 0.879 40 H 0.376 0.624 41 H -0.248 1.248 42 H -0.243 1.243 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 1.523 -4.826 6.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.096 4.096 7 H 0.129 0.871 8 C 0.312 3.688 9 O -0.386 6.386 10 O -0.272 6.272 11 C 0.044 3.956 12 C -0.106 4.106 13 C 0.117 3.883 14 O -0.116 6.116 15 C 0.077 3.923 16 C -0.317 4.317 17 C -0.150 4.150 18 O -0.334 6.334 19 Si 0.574 3.426 20 C 0.315 3.685 21 O -0.318 6.318 22 C -0.214 4.214 23 C -0.018 4.018 24 C -0.200 4.200 25 Br 0.062 6.938 26 C -0.032 4.032 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.218 0.782 39 H 0.138 0.862 40 H 0.223 0.777 41 H -0.173 1.173 42 H -0.166 1.166 43 H 0.173 0.827 44 H 0.179 0.821 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.559 2.004 -3.849 5.612 hybrid contribution 0.387 0.055 0.380 0.545 sum -3.172 2.060 -3.469 5.132 Atomic orbital electron populations 1.21834 0.94896 1.01997 1.01924 1.21204 0.95804 0.99831 0.94688 0.90996 1.21606 0.93982 1.01361 0.98135 1.21558 0.96714 1.00888 0.95813 1.21185 0.85843 1.03589 0.99013 0.87059 1.23895 0.91684 0.74364 0.78896 1.90706 1.70403 1.41689 1.35773 1.86414 1.20899 1.72162 1.47739 1.21500 0.76937 1.01529 0.95683 1.18806 0.88587 1.04598 0.98652 1.18884 0.88400 0.93520 0.87540 1.83102 1.16181 1.66937 1.45362 1.23793 0.79859 0.91992 0.96639 1.22079 1.00048 1.09987 0.99544 1.24731 0.89149 0.91922 1.09153 1.86612 1.78241 1.27145 1.41360 0.95744 0.83124 0.78830 0.84950 1.18243 0.86252 0.78359 0.85675 1.90782 1.75109 1.35463 1.30472 1.20728 0.97193 1.06438 0.97052 1.21143 0.90478 0.92761 0.97403 1.21848 0.94127 1.06088 0.97905 1.96849 1.61051 1.82830 1.53069 1.21055 1.01488 0.91132 0.89502 1.21477 0.95779 1.01385 0.95628 1.21619 0.94189 1.01223 0.98132 0.92564 0.92566 0.92551 0.91148 0.91371 0.90369 0.91232 0.88706 0.88801 0.78233 0.86163 0.77705 1.17298 1.16641 0.82671 0.82085 0.90830 0.90818 0.91127 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 9.19 37.16 0.34 0.66 16 2 C -0.10 0.22 2.72 -90.62 -0.25 -0.03 16 3 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 4 C -0.11 0.31 5.20 -26.73 -0.14 0.17 16 5 C -0.11 0.28 5.13 -26.73 -0.14 0.15 16 6 C -0.08 0.15 2.63 -91.77 -0.24 -0.09 16 7 H 0.11 -0.35 8.14 -51.93 -0.42 -0.78 16 8 C 0.47 0.06 7.25 36.00 0.26 0.32 16 9 O -0.50 -1.48 15.73 -18.75 -0.29 -1.77 16 10 O -0.35 0.27 8.58 -39.24 -0.34 -0.07 16 11 C 0.12 -0.14 5.38 36.01 0.19 0.05 16 12 C -0.10 0.08 5.89 -104.50 -0.62 -0.53 16 13 C 0.16 -0.03 6.74 -38.49 -0.26 -0.29 16 14 O -0.21 0.37 9.21 5.64 0.05 0.42 16 15 C 0.14 -0.41 9.99 29.43 0.29 -0.12 16 16 C -0.31 0.04 5.32 -104.49 -0.56 -0.51 16 17 C -0.04 0.01 2.46 36.00 0.09 0.09 16 18 O -0.53 -0.50 12.88 -35.23 -0.45 -0.96 16 19 Si 0.67 -1.91 29.86 -169.99 -5.08 -6.98 16 20 C 0.43 1.25 6.98 -34.33 -0.24 1.01 16 21 O -0.44 -2.81 16.93 5.00 0.08 -2.73 16 22 C -0.21 -0.31 5.89 -104.84 -0.62 -0.92 16 23 C 0.00 0.00 9.40 -39.30 -0.37 -0.37 16 24 C -0.12 -0.04 6.22 -39.50 -0.25 -0.28 16 25 Br -0.02 -0.01 33.69 -68.01 -2.29 -2.30 16 26 C -0.01 0.01 9.10 -39.51 -0.36 -0.35 16 27 C -0.11 0.15 4.49 -26.73 -0.12 0.03 16 28 C -0.11 0.25 5.20 -26.73 -0.14 0.12 16 29 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 31 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.08 -0.23 8.11 -51.93 -0.42 -0.65 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 36 H 0.09 -0.15 8.13 -51.93 -0.42 -0.57 16 37 H 0.09 -0.13 8.13 -51.93 -0.42 -0.55 16 38 H 0.20 -1.34 4.77 -52.49 -0.25 -1.60 16 39 H 0.12 0.19 7.96 -51.93 -0.41 -0.23 16 40 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 41 H -0.25 0.28 7.11 56.52 0.40 0.68 16 42 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 43 H 0.16 0.21 7.81 -52.48 -0.41 -0.20 16 44 H 0.16 -0.31 6.96 -52.48 -0.37 -0.67 16 45 H 0.07 -0.03 8.10 -51.93 -0.42 -0.45 16 46 H 0.07 -0.06 8.10 -51.93 -0.42 -0.48 16 47 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 48 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 414.48 15.07 6.25 6.25 Total: 0.00 -8.74 414.48 -11.75 -20.49 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: -6.57 Total: -11.46 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.11 Total: -0.90 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.95 Total: -5.11 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: -5.08 Total: -6.98 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -8.74 -11.75 -20.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11733144_484008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.544 kcal (2) G-P(sol) polarization free energy of solvation -8.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds