Wall clock time and date at job start Sat Mar 6 2021 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 C 1.52999 * 109.46809 * 240.00593 * 2 1 3 5 5 O 1.45194 * 109.47420 * 120.00782 * 2 1 3 6 6 C 1.34631 * 117.00078 * 59.99408 * 5 2 1 7 7 O 1.21514 * 120.00307 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99836 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99895 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.85114 * 23.80165 * 9 8 6 11 11 C 1.53778 * 113.61775 * 155.00123 * 9 8 6 12 12 C 1.53774 * 87.08378 * 140.06167 * 11 9 8 13 13 H 1.09002 * 113.61622 * 89.20384 * 12 11 9 14 14 C 1.53000 * 113.61679 * 220.02125 * 12 11 9 15 15 O 1.45203 * 109.47049 * 183.47495 * 14 12 11 16 16 C 1.34736 * 116.99583 * 179.97438 * 15 14 12 17 17 O 1.21487 * 120.00350 * 0.02562 * 16 15 14 18 18 C 1.47569 * 119.99610 * 179.97438 * 16 15 14 19 19 C 1.39875 * 120.16976 * 179.97438 * 18 16 15 20 20 F 1.35100 * 120.11274 * 0.02562 * 19 18 16 21 21 C 1.38314 * 119.77233 * 179.97438 * 19 18 16 22 22 C 1.38207 * 120.12384 * 359.97438 * 21 19 18 23 23 C 1.50699 * 119.82666 * 180.02562 * 22 21 19 24 24 O 1.42901 * 109.46830 * 300.00298 * 23 22 21 25 25 Si 1.86298 * 109.46950 * 180.02562 * 23 22 21 26 26 C 1.38476 * 120.34531 * 0.30311 * 22 21 19 27 27 C 1.37830 * 120.22924 * 359.44254 * 26 22 21 28 28 C 1.53780 * 87.17614 * 334.61219 * 12 11 9 29 29 H 1.09003 * 109.47092 * 299.99565 * 1 2 3 30 30 H 1.09000 * 109.47077 * 59.99637 * 1 2 3 31 31 H 1.08996 * 109.47299 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46753 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47122 * 300.00494 * 3 2 1 34 34 H 1.09000 * 109.46610 * 60.00758 * 3 2 1 35 35 H 1.09001 * 109.47366 * 299.99651 * 4 2 1 36 36 H 1.09000 * 109.47489 * 60.00022 * 4 2 1 37 37 H 1.09003 * 109.47301 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00038 * 0.02562 * 8 6 5 39 39 H 1.09007 * 113.60914 * 25.51190 * 11 9 8 40 40 H 1.09002 * 113.61518 * 254.61704 * 11 9 8 41 41 H 1.08995 * 109.47193 * 63.46865 * 14 12 11 42 42 H 1.09003 * 109.46813 * 303.47134 * 14 12 11 43 43 H 1.07996 * 119.94054 * 180.02562 * 21 19 18 44 44 H 1.08991 * 109.47351 * 60.00446 * 23 22 21 45 45 H 0.96708 * 114.00246 * 299.99864 * 24 23 22 46 46 H 1.48506 * 109.99834 * 180.02562 * 25 23 22 47 47 H 1.48502 * 110.00011 * 301.31529 * 25 23 22 48 48 H 1.08008 * 119.88538 * 179.72237 * 26 22 21 49 49 H 1.08001 * 120.06550 * 180.30093 * 27 26 22 50 50 H 1.08995 * 113.61702 * 139.93381 * 28 12 11 51 51 H 1.09002 * 113.61094 * 270.84495 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6523 -1.9724 1.3381 7 8 0.9515 -2.5097 0.5033 8 7 2.0673 -2.6656 2.4168 9 6 1.6741 -4.0671 2.5827 10 1 1.4224 -4.5506 1.6388 11 6 2.6471 -4.8812 3.4517 12 6 1.4097 -5.5563 4.0663 13 1 1.0865 -6.4479 3.5289 14 6 1.5196 -5.7798 5.5759 15 8 0.3453 -6.4925 6.0464 16 6 0.2856 -6.7708 7.3634 17 8 1.1898 -6.4271 8.0985 18 6 -0.8785 -7.4922 7.9130 19 6 -0.9439 -7.7835 9.2795 20 9 0.0588 -7.4049 10.1020 21 6 -2.0391 -8.4596 9.7860 22 6 -3.0656 -8.8457 8.9450 23 6 -4.2560 -9.5814 9.5041 24 8 -3.8216 -10.8027 10.1056 25 14 -5.4546 -9.9591 8.1288 26 6 -3.0034 -8.5649 7.5905 27 6 -1.9213 -7.8873 7.0712 28 6 0.6243 -4.2898 3.6867 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2072 -2.1393 37 1 3.1299 -0.7208 -1.2496 38 1 2.6263 -2.2366 3.0833 39 1 3.2111 -4.2750 4.1607 40 1 3.2776 -5.5624 2.8803 41 1 1.5872 -4.8168 6.0818 42 1 2.4120 -6.3672 5.7921 43 1 -2.0925 -8.6856 10.8407 44 1 -4.7469 -8.9615 10.2542 45 1 -3.3750 -11.4050 9.4948 46 1 -6.6334 -10.6842 8.6673 47 1 -5.8895 -8.6993 7.4738 48 1 -3.8078 -8.8740 6.9393 49 1 -1.8777 -7.6655 6.0151 50 1 -0.3758 -4.4943 3.3046 51 1 0.6343 -3.5217 4.4600 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946254_15734238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:21:21 Heat of formation + Delta-G solvation = -185.749850 kcal Electronic energy + Delta-G solvation = -34453.554936 eV Core-core repulsion = 29428.505857 eV Total energy + Delta-G solvation = -5025.049079 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.172 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -50.16317 -41.95241 -41.70277 -40.53637 -40.10522 -38.08984 -37.60828 -37.39502 -35.41253 -34.25514 -33.20837 -31.92941 -29.80869 -28.37967 -28.31824 -27.71485 -26.75439 -24.99959 -24.08070 -23.90447 -22.48153 -22.06846 -21.41623 -20.56638 -19.32356 -19.04267 -18.89324 -18.19755 -17.95614 -17.69997 -17.62100 -17.19471 -17.07039 -16.83595 -16.65018 -16.23910 -16.13715 -15.84939 -15.57926 -15.40822 -15.30775 -14.96732 -14.79819 -14.55730 -14.35024 -14.23086 -13.72740 -13.53763 -13.48631 -13.38047 -13.28499 -13.21376 -13.03898 -12.96873 -12.89814 -12.88162 -12.54670 -12.46414 -12.31660 -12.21355 -11.99026 -11.88010 -11.83780 -11.57395 -11.40664 -11.29329 -11.11330 -10.62032 -10.26899 -10.16208 -10.01904 -4.95809 -0.74044 -0.03089 1.14261 1.21353 1.29036 1.39593 1.68091 1.72246 2.01955 2.34267 2.89849 3.11270 3.21394 3.37233 3.41324 3.49307 3.55607 3.64966 3.72737 3.73453 3.78994 3.82333 3.92842 3.93081 4.02533 4.16258 4.23395 4.34210 4.37799 4.49806 4.55351 4.59950 4.61675 4.69571 4.72868 4.75066 4.77608 4.78876 4.81519 4.85342 4.86094 4.89914 4.95379 5.02437 5.06386 5.09227 5.15767 5.23168 5.25783 5.31563 5.49552 5.52582 5.58476 6.38383 6.50694 6.74025 7.32517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.691 5.691 9 C 0.135 3.865 10 H 0.111 0.889 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.121 0.879 14 C 0.076 3.924 15 O -0.341 6.341 16 C 0.509 3.491 17 O -0.532 6.532 18 C -0.178 4.178 19 C 0.141 3.859 20 F -0.135 7.135 21 C -0.145 4.145 22 C -0.047 4.047 23 C -0.085 4.085 24 O -0.553 6.553 25 Si 0.789 3.211 26 C -0.132 4.132 27 C -0.014 4.014 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.150 0.850 44 H 0.117 0.883 45 H 0.399 0.601 46 H -0.302 1.302 47 H -0.274 1.274 48 H 0.173 0.827 49 H 0.179 0.821 50 H 0.075 0.925 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -1.743 -4.604 5.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.397 3.603 7 O -0.484 6.484 8 N -0.350 5.350 9 C 0.032 3.968 10 H 0.129 0.871 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.139 0.861 14 C 0.003 3.997 15 O -0.257 6.257 16 C 0.355 3.645 17 O -0.423 6.423 18 C -0.180 4.180 19 C 0.121 3.879 20 F -0.113 7.113 21 C -0.163 4.163 22 C -0.048 4.048 23 C -0.194 4.194 24 O -0.361 6.361 25 Si 0.694 3.306 26 C -0.149 4.149 27 C -0.032 4.032 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.167 0.833 44 H 0.134 0.866 45 H 0.249 0.751 46 H -0.230 1.230 47 H -0.200 1.200 48 H 0.190 0.810 49 H 0.196 0.804 50 H 0.094 0.906 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.352 -1.391 -4.648 5.391 hybrid contribution 0.895 0.862 1.404 1.875 sum -1.456 -0.530 -3.244 3.595 Atomic orbital electron populations 1.22468 0.94031 1.03733 1.03443 1.22351 0.94470 0.92562 0.81580 1.21894 1.02449 0.90972 1.04198 1.22470 1.01624 1.02294 0.97282 1.86312 1.71545 1.23443 1.47282 1.18429 0.78641 0.80754 0.82508 1.90899 1.42197 1.70894 1.44409 1.44795 1.54962 1.12349 1.22913 1.22604 0.96649 0.78490 0.99068 0.87109 1.23365 0.96067 0.98438 0.98265 1.22333 0.98151 0.99025 0.91995 0.86141 1.23282 0.85436 0.96254 0.94754 1.86502 1.45903 1.69595 1.23714 1.21116 0.85695 0.76560 0.81160 1.90910 1.39742 1.51188 1.60425 1.19320 0.97363 1.08534 0.92740 1.18050 0.86375 0.96722 0.86758 1.91567 1.59242 1.88803 1.71718 1.21055 0.92582 1.00211 1.02501 1.20686 0.95346 0.95071 0.93707 1.25467 0.99075 0.87408 1.07412 1.86518 1.79942 1.28263 1.41370 0.93598 0.76481 0.81715 0.78852 1.21401 0.99474 0.99807 0.94205 1.21638 0.89299 0.91030 1.01194 1.23644 0.99233 0.97322 0.98320 0.92082 0.89476 0.91676 0.91198 0.88309 0.91295 0.91660 0.89488 0.91959 0.74664 0.87807 0.88426 0.91027 0.90460 0.83262 0.86577 0.75065 1.23031 1.20014 0.81015 0.80403 0.90597 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.96 9.94 -55.40 -0.55 -2.51 16 6 C 0.64 3.88 8.06 129.79 1.05 4.92 16 7 O -0.59 -6.56 11.48 19.80 0.23 -6.33 16 8 N -0.69 0.40 5.37 -567.31 -3.04 -2.65 16 9 C 0.14 -0.41 4.24 45.58 0.19 -0.21 16 10 H 0.11 -0.01 7.46 -2.39 -0.02 -0.03 16 11 C -0.12 0.93 7.40 31.12 0.23 1.16 16 12 C -0.10 0.58 4.01 -10.27 -0.04 0.54 16 13 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 14 C 0.08 -0.14 5.30 71.98 0.38 0.25 16 15 O -0.34 -0.41 9.47 -56.46 -0.53 -0.95 16 16 C 0.51 3.29 7.89 70.28 0.55 3.84 16 17 O -0.53 -7.32 15.13 19.88 0.30 -7.02 16 18 C -0.18 -0.50 5.88 -20.06 -0.12 -0.62 16 19 C 0.14 0.75 7.29 22.68 0.17 0.92 16 20 F -0.14 -1.59 15.55 44.97 0.70 -0.89 16 21 C -0.14 -0.08 9.57 22.28 0.21 0.13 16 22 C -0.05 0.20 5.40 -19.82 -0.11 0.09 16 23 C -0.08 0.44 2.82 71.24 0.20 0.64 16 24 O -0.55 2.06 12.76 -148.98 -1.90 0.15 16 25 Si 0.79 -5.92 29.77 68.60 2.04 -3.88 16 26 C -0.13 0.96 8.65 22.23 0.19 1.16 16 27 C -0.01 0.07 9.62 22.53 0.22 0.28 16 28 C -0.15 0.56 7.45 31.18 0.23 0.80 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 36 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.42 -1.99 8.84 -92.71 -0.82 -2.81 16 39 H 0.10 -0.95 8.08 -2.38 -0.02 -0.97 16 40 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.07 -0.06 7.87 -2.39 -0.02 -0.08 16 42 H 0.08 -0.12 8.14 -2.39 -0.02 -0.13 16 43 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 45 H 0.40 -4.83 8.70 -74.05 -0.64 -5.47 16 46 H -0.30 -0.39 7.11 99.48 0.71 0.32 16 47 H -0.27 1.07 7.11 99.48 0.71 1.78 16 48 H 0.17 -2.28 4.85 -2.91 -0.01 -2.29 16 49 H 0.18 -1.74 7.61 -2.91 -0.02 -1.76 16 50 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 51 H 0.09 -0.30 7.92 -2.39 -0.02 -0.32 16 Total: 0.00 -24.77 422.63 1.98 -22.78 By element: Atomic # 1 Polarization: -13.58 SS G_CDS: -0.44 Total: -14.03 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.19 Total: 15.31 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -3.04 Total: -2.65 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -2.46 Total: -16.66 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.70 Total: -0.89 kcal Atomic # 14 Polarization: -5.92 SS G_CDS: 2.04 Total: -3.88 kcal Total: -24.77 1.98 -22.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946254_15734238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.968 kcal (2) G-P(sol) polarization free energy of solvation -24.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds