Wall clock time and date at job start Sat Mar 6 2021 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47025 * 2 1 4 4 C 1.50695 * 109.47008 * 120.00006 * 2 1 3 5 5 C 1.38430 * 119.82430 * 64.99709 * 4 2 1 6 6 C 1.37885 * 120.22517 * 179.97438 * 5 4 2 7 7 C 1.39678 * 119.87205 * 0.02562 * 6 5 4 8 8 C 1.47567 * 120.17177 * 179.97438 * 7 6 5 9 9 O 1.21489 * 119.99809 * 180.02562 * 8 7 6 10 10 O 1.34726 * 119.99902 * 0.02562 * 8 7 6 11 11 C 1.45202 * 116.99906 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47059 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46972 * 305.00097 * 12 11 10 14 14 C 1.53000 * 109.47517 * 64.99653 * 12 11 10 15 15 C 1.52991 * 109.47461 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47187 * 300.00531 * 15 14 12 17 17 H 1.09005 * 109.46532 * 299.99550 * 16 15 14 18 18 O 1.42905 * 109.47059 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47397 * 59.99755 * 16 15 14 20 20 C 1.52996 * 109.47031 * 185.00164 * 12 11 10 21 21 C 1.39922 * 119.65479 * 0.02562 * 7 6 5 22 22 F 1.35095 * 120.10890 * 180.02562 * 21 7 6 23 23 C 1.38251 * 119.82470 * 244.98019 * 4 2 1 24 24 H 0.96709 * 113.99778 * 59.99985 * 1 2 3 25 25 H 1.09004 * 109.46801 * 239.99863 * 2 1 3 26 26 H 1.48497 * 109.99910 * 298.67991 * 3 2 1 27 27 H 1.48497 * 109.99749 * 60.00084 * 3 2 1 28 28 H 1.08003 * 119.89123 * 359.96258 * 5 4 2 29 29 H 1.08005 * 120.06322 * 179.72532 * 6 5 4 30 30 H 1.08999 * 109.47070 * 299.99888 * 11 10 8 31 31 H 1.08993 * 109.46888 * 59.99700 * 11 10 8 32 32 H 1.09004 * 109.47358 * 300.00712 * 14 12 11 33 33 H 1.09001 * 109.46637 * 60.00239 * 14 12 11 34 34 H 1.08998 * 109.47837 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47166 * 60.00104 * 15 14 12 36 36 H 0.96701 * 113.99865 * 59.99421 * 18 16 15 37 37 H 1.08994 * 109.47227 * 180.02562 * 19 16 15 38 38 H 1.09001 * 109.46903 * 59.99865 * 19 16 15 39 39 H 1.09009 * 109.47002 * 299.99504 * 20 12 11 40 40 H 1.08996 * 109.47649 * 59.99632 * 20 12 11 41 41 H 1.07990 * 119.93953 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6822 -2.0621 1.3949 6 6 2.1384 -2.7205 2.5172 7 6 2.8538 -2.0207 3.4916 8 6 3.3446 -2.7185 4.6957 9 8 3.9661 -2.1067 5.5414 10 8 3.1035 -4.0342 4.8570 11 6 3.6166 -4.6551 6.0651 12 6 3.2478 -6.1400 6.0715 13 1 2.1697 -6.2472 5.9518 14 6 3.9616 -6.8478 4.9180 15 6 3.5934 -8.3327 4.9248 16 6 4.0246 -8.9591 6.2525 17 1 5.1027 -8.8515 6.3718 18 8 3.6801 -10.3460 6.2590 19 6 3.3107 -8.2514 7.4059 20 6 3.6785 -6.7667 7.3991 21 6 3.1017 -0.6542 3.3206 22 9 3.7931 0.0315 4.2570 23 6 2.6387 -0.0087 2.1888 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 1.5879 2.4585 -1.2242 27 1 1.5614 2.4678 1.2085 28 1 1.1285 -2.6029 0.6416 29 1 1.9387 -3.7742 2.6450 30 1 4.7011 -4.5503 6.0950 31 1 3.1803 -4.1682 6.9372 32 1 3.6549 -6.4012 3.9721 33 1 5.0398 -6.7406 5.0376 34 1 4.1023 -8.8371 4.1033 35 1 2.5154 -8.4403 4.8055 36 1 4.0974 -10.8582 5.5529 37 1 3.6182 -8.6973 8.3518 38 1 2.2326 -8.3589 7.2865 39 1 4.7567 -6.6596 7.5186 40 1 3.1699 -6.2625 8.2208 41 1 2.8299 1.0454 2.0535 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946254_16737258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:43:23 Heat of formation + Delta-G solvation = -192.427892 kcal Electronic energy + Delta-G solvation = -25533.955646 eV Core-core repulsion = 21487.564086 eV Total energy + Delta-G solvation = -4046.391560 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16134 -41.76475 -40.43068 -39.94975 -37.92030 -37.63271 -36.57069 -33.50911 -31.86986 -31.82597 -31.81983 -28.15284 -26.51751 -24.18140 -23.95024 -23.66521 -22.33864 -21.96297 -20.87909 -19.34910 -18.65094 -18.45398 -18.18414 -18.01585 -17.70637 -17.35112 -16.79279 -16.50456 -16.19577 -15.96262 -15.52014 -15.42296 -15.23734 -14.95105 -14.57717 -14.42372 -14.12469 -13.99644 -13.70604 -13.63320 -13.40181 -13.20728 -13.13944 -13.01180 -12.57471 -12.33943 -12.13012 -11.99859 -11.95075 -11.74094 -11.63610 -11.51804 -11.09421 -10.69932 -10.61101 -10.34796 -9.97103 -4.95548 -0.73659 -0.04338 1.18664 1.25717 1.35490 1.55959 1.91991 2.31883 2.82080 3.14468 3.22151 3.39448 3.54670 3.62334 3.67459 3.72853 3.76587 3.94823 3.95898 4.03997 4.15685 4.24167 4.32670 4.35028 4.38529 4.47756 4.48633 4.50339 4.54512 4.70385 4.81265 4.81554 4.92417 4.95749 5.04871 5.08195 5.15423 5.16234 5.17862 5.21858 5.32543 5.44926 5.53239 6.49391 6.56340 6.87514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.078 4.078 3 Si 0.742 3.258 4 C -0.010 4.010 5 C -0.109 4.109 6 C -0.021 4.021 7 C -0.177 4.177 8 C 0.509 3.491 9 O -0.530 6.530 10 O -0.341 6.341 11 C 0.070 3.930 12 C -0.081 4.081 13 H 0.086 0.914 14 C -0.110 4.110 15 C -0.145 4.145 16 C 0.099 3.901 17 H 0.060 0.940 18 O -0.591 6.591 19 C -0.112 4.112 20 C -0.107 4.107 21 C 0.147 3.853 22 F -0.131 7.131 23 C -0.167 4.167 24 H 0.401 0.599 25 H 0.121 0.879 26 H -0.278 1.278 27 H -0.304 1.304 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -2.631 -7.273 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.188 4.188 3 Si 0.648 3.352 4 C -0.010 4.010 5 C -0.127 4.127 6 C -0.039 4.039 7 C -0.179 4.179 8 C 0.355 3.645 9 O -0.421 6.421 10 O -0.257 6.257 11 C -0.004 4.004 12 C -0.099 4.099 13 H 0.104 0.896 14 C -0.148 4.148 15 C -0.183 4.183 16 C 0.041 3.959 17 H 0.078 0.922 18 O -0.399 6.399 19 C -0.149 4.149 20 C -0.144 4.144 21 C 0.127 3.873 22 F -0.109 7.109 23 C -0.185 4.185 24 H 0.253 0.747 25 H 0.139 0.861 26 H -0.204 1.204 27 H -0.232 1.232 28 H 0.186 0.814 29 H 0.190 0.810 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.200 -1.755 -5.906 6.165 hybrid contribution -0.502 0.239 -0.225 0.600 sum -0.302 -1.516 -6.131 6.323 Atomic orbital electron populations 1.86532 1.17471 1.80683 1.51580 1.24850 0.84809 1.10920 0.98225 0.94241 0.90749 0.73367 0.76813 1.19608 0.93212 0.94369 0.93805 1.21402 0.99326 0.93442 0.98517 1.21676 0.90432 1.01565 0.90210 1.19303 1.09251 0.92386 0.96938 1.21107 0.76490 0.81207 0.85714 1.90906 1.39103 1.67741 1.44337 1.86483 1.72208 1.22401 1.44638 1.23332 0.99551 0.93386 0.84107 1.21219 1.02075 0.90035 0.96582 0.89574 1.21522 1.00459 0.94320 0.98453 1.22202 1.02292 0.96115 0.97646 1.21923 0.98137 0.80693 0.95171 0.92165 1.86483 1.74981 1.20818 1.57631 1.21433 1.00943 0.94454 0.98117 1.21436 1.02484 0.94277 0.96221 1.17803 0.93287 0.88703 0.87460 1.91574 1.76287 1.79229 1.63811 1.21077 1.02711 1.01618 0.93110 0.74711 0.86099 1.20412 1.23164 0.81416 0.80972 0.90872 0.91144 0.90558 0.91384 0.90421 0.91585 0.75699 0.91350 0.91668 0.90639 0.90276 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.87 12.81 -148.98 -1.91 -0.04 16 2 C -0.08 0.46 2.79 71.23 0.20 0.66 16 3 Si 0.74 -3.21 29.83 68.60 2.05 -1.17 16 4 C -0.01 0.02 5.39 -19.82 -0.11 -0.09 16 5 C -0.11 0.45 9.66 22.23 0.21 0.67 16 6 C -0.02 0.05 9.62 22.53 0.22 0.26 16 7 C -0.18 -0.80 5.88 -20.06 -0.12 -0.91 16 8 C 0.51 4.12 7.89 70.28 0.55 4.67 16 9 O -0.53 -8.00 15.13 19.87 0.30 -7.70 16 10 O -0.34 -1.11 9.01 -56.37 -0.51 -1.62 16 11 C 0.07 0.07 4.85 71.98 0.35 0.42 16 12 C -0.08 0.21 2.43 -10.80 -0.03 0.18 16 13 H 0.09 -0.19 8.14 -2.39 -0.02 -0.20 16 14 C -0.11 0.39 5.10 30.59 0.16 0.55 16 15 C -0.14 0.51 5.54 30.59 0.17 0.68 16 16 C 0.10 -0.12 3.47 30.59 0.11 -0.02 16 17 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 18 O -0.59 -0.90 13.32 -148.98 -1.98 -2.88 16 19 C -0.11 0.08 5.57 30.58 0.17 0.25 16 20 C -0.11 0.33 5.20 30.58 0.16 0.49 16 21 C 0.15 0.93 7.29 22.69 0.17 1.09 16 22 F -0.13 -1.54 15.55 44.97 0.70 -0.84 16 23 C -0.17 -0.21 8.63 22.28 0.19 -0.02 16 24 H 0.40 -4.46 8.74 -74.05 -0.65 -5.11 16 25 H 0.12 -1.44 7.96 -2.39 -0.02 -1.46 16 26 H -0.28 0.16 7.11 99.48 0.71 0.87 16 27 H -0.30 -1.33 7.04 99.48 0.70 -0.63 16 28 H 0.17 -1.51 8.06 -2.91 -0.02 -1.53 16 29 H 0.17 -1.17 7.61 -2.91 -0.02 -1.20 16 30 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.08 -0.27 7.82 -2.38 -0.02 -0.29 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.39 -2.52 9.08 -74.06 -0.67 -3.19 16 37 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 40 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.16 -0.17 4.84 -2.92 -0.01 -0.18 16 Total: 0.00 -20.50 342.79 0.82 -19.67 By element: Atomic # 1 Polarization: -14.09 SS G_CDS: -0.22 Total: -14.31 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 2.40 Total: 8.88 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -4.10 Total: -12.24 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.70 Total: -0.84 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.17 kcal Total: -20.50 0.82 -19.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946254_16737258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.757 kcal (2) G-P(sol) polarization free energy of solvation -20.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds