Wall clock time and date at job start Sat Mar 6 2021 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99923 * 2 1 4 4 C 1.52998 * 112.84859 * 65.97357 * 3 2 1 5 5 F 1.39905 * 109.47506 * 283.49422 * 4 3 2 6 6 F 1.39902 * 109.47353 * 43.49565 * 4 3 2 7 7 F 1.39903 * 109.47198 * 163.49488 * 4 3 2 8 8 C 1.53782 * 113.61452 * 294.78035 * 3 2 1 9 9 C 1.53787 * 87.07948 * 270.80038 * 8 3 2 10 10 H 1.08998 * 113.61113 * 220.02258 * 9 8 3 11 11 C 1.53001 * 113.61651 * 89.19810 * 9 8 3 12 12 O 1.45192 * 109.47077 * 176.53275 * 11 9 8 13 13 C 1.34735 * 117.00039 * 180.02562 * 12 11 9 14 14 O 1.21485 * 119.99828 * 359.97438 * 13 12 11 15 15 C 1.47568 * 120.00010 * 179.97438 * 13 12 11 16 16 C 1.39884 * 120.16990 * 179.97438 * 15 13 12 17 17 F 1.35094 * 120.11324 * 359.95274 * 16 15 13 18 18 C 1.38314 * 119.76977 * 179.97438 * 16 15 13 19 19 C 1.38200 * 120.12384 * 0.02562 * 18 16 15 20 20 C 1.50701 * 119.82549 * 180.02562 * 19 18 16 21 21 O 1.42897 * 109.47228 * 64.99812 * 20 19 18 22 22 Si 1.86306 * 109.47055 * 185.00024 * 20 19 18 23 23 C 1.38474 * 120.35505 * 0.02562 * 19 18 16 24 24 C 1.37844 * 120.22267 * 359.69723 * 23 19 18 25 25 C 1.53785 * 87.17105 * 334.60940 * 9 8 3 26 26 H 1.09004 * 109.47277 * 62.54346 * 1 2 3 27 27 H 1.09002 * 109.46872 * 182.53423 * 1 2 3 28 28 H 1.09001 * 109.47537 * 302.53754 * 1 2 3 29 29 H 1.08996 * 113.61313 * 156.25293 * 8 3 2 30 30 H 1.08996 * 113.61022 * 25.34411 * 8 3 2 31 31 H 1.09001 * 109.47044 * 296.53376 * 11 9 8 32 32 H 1.09001 * 109.47034 * 56.52999 * 11 9 8 33 33 H 1.07995 * 119.93593 * 179.97438 * 18 16 15 34 34 H 1.09002 * 109.46748 * 304.99689 * 20 19 18 35 35 H 0.96706 * 113.99741 * 60.00434 * 21 20 19 36 36 H 1.48509 * 109.99640 * 179.97438 * 22 20 19 37 37 H 1.48487 * 110.00075 * 301.31506 * 22 20 19 38 38 H 1.07995 * 119.89269 * 179.97438 * 23 19 18 39 39 H 1.07999 * 120.06860 * 180.30317 * 24 23 19 40 40 H 1.08998 * 113.61620 * 139.94079 * 25 9 8 41 41 H 1.09002 * 113.61325 * 270.84368 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7274 2.0817 1.2878 5 9 0.4112 2.5555 1.2673 6 9 1.9019 1.2370 2.3893 7 9 2.6105 3.1624 1.3844 8 6 1.7212 2.1084 -1.2793 9 6 2.9984 1.4839 -1.8656 10 1 3.5948 2.1811 -2.4542 11 6 2.7568 0.1549 -2.5841 12 8 4.0006 -0.3114 -3.1703 13 6 3.9598 -1.4774 -3.8444 14 8 2.9137 -2.0878 -3.9392 15 6 5.1857 -2.0128 -4.4673 16 6 5.1475 -3.2232 -5.1675 17 9 3.9877 -3.9075 -5.2753 18 6 6.3014 -3.7171 -5.7486 19 6 7.4881 -3.0176 -5.6376 20 6 8.7412 -3.5617 -6.2738 21 8 8.5851 -3.5795 -7.6942 22 14 10.1880 -2.4787 -5.8215 23 6 7.5320 -1.8195 -4.9448 24 6 6.3895 -1.3110 -4.3648 25 6 3.4918 1.3209 -0.4182 26 1 -0.3634 0.4738 -0.9119 27 1 -0.3633 -1.0267 0.0454 28 1 -0.3634 0.5527 0.8663 29 1 1.7865 3.1877 -1.1415 30 1 0.8098 1.8004 -1.7915 31 1 2.3925 -0.5834 -1.8697 32 1 2.0151 0.2965 -3.3702 33 1 6.2750 -4.6515 -6.2894 34 1 8.9200 -4.5754 -5.9152 35 1 8.4226 -2.7090 -8.0829 36 1 11.4301 -3.0050 -6.4424 37 1 9.9424 -1.0868 -6.2768 38 1 8.4635 -1.2793 -4.8623 39 1 6.4256 -0.3739 -3.8293 40 1 4.0076 0.3781 -0.2363 41 1 4.0419 2.1845 -0.0445 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946254_17321610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:01:21 Heat of formation + Delta-G solvation = -282.894799 kcal Electronic energy + Delta-G solvation = -33484.923198 eV Core-core repulsion = 28026.246772 eV Total energy + Delta-G solvation = -5458.676426 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.25277 -50.14919 -48.78377 -48.72404 -41.91462 -41.18531 -40.29847 -37.92009 -37.62887 -36.90182 -33.26369 -31.90928 -30.74574 -28.37141 -28.02086 -27.07186 -26.76506 -24.16579 -24.03157 -23.26971 -22.09416 -20.69093 -19.82467 -19.54639 -19.29401 -19.16770 -18.89279 -18.02344 -17.91189 -17.70026 -17.20698 -17.06961 -16.78005 -16.50219 -16.25496 -16.05811 -15.79360 -15.66240 -15.60926 -15.52930 -15.22459 -15.09607 -14.97846 -14.89512 -14.81473 -14.70272 -14.26031 -14.22669 -13.87690 -13.45449 -13.39187 -13.23641 -13.14958 -13.00215 -12.76140 -12.41152 -12.34153 -12.04387 -11.75760 -11.72465 -11.68827 -11.57184 -10.81123 -10.72430 -10.31083 -10.01064 -4.85688 -0.72492 -0.01045 1.22935 1.30005 1.32711 1.53605 1.65413 2.03027 2.08354 2.35345 2.56694 2.63073 2.88077 2.91687 3.15224 3.30173 3.33076 3.42829 3.47387 3.56316 3.62636 3.77833 3.93384 4.04533 4.20209 4.22172 4.24197 4.34134 4.40687 4.45347 4.52527 4.59293 4.62848 4.69589 4.74539 4.79067 4.83135 4.84790 4.91689 5.00912 5.11184 5.24491 5.54493 5.70010 6.47221 6.51043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.029 3.971 4 C 0.434 3.566 5 F -0.186 7.186 6 F -0.188 7.188 7 F -0.173 7.173 8 C -0.136 4.136 9 C -0.089 4.089 10 H 0.129 0.871 11 C 0.075 3.925 12 O -0.338 6.338 13 C 0.509 3.491 14 O -0.531 6.531 15 C -0.176 4.176 16 C 0.140 3.860 17 F -0.136 7.136 18 C -0.144 4.144 19 C -0.045 4.045 20 C -0.094 4.094 21 O -0.546 6.546 22 Si 0.781 3.219 23 C -0.132 4.132 24 C -0.013 4.013 25 C -0.109 4.109 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.390 0.610 36 H -0.307 1.307 37 H -0.266 1.266 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.092 0.908 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 4.838 0.028 7.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.014 4.014 4 C 0.379 3.621 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.173 4.173 9 C -0.108 4.108 10 H 0.147 0.853 11 C 0.002 3.998 12 O -0.254 6.254 13 C 0.354 3.646 14 O -0.422 6.422 15 C -0.178 4.178 16 C 0.120 3.880 17 F -0.114 7.114 18 C -0.163 4.163 19 C -0.045 4.045 20 C -0.202 4.202 21 O -0.355 6.355 22 Si 0.684 3.316 23 C -0.149 4.149 24 C -0.031 4.031 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.240 0.760 36 H -0.235 1.235 37 H -0.192 1.192 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.111 0.889 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.516 4.387 -0.142 7.049 hybrid contribution -1.875 -0.097 -0.619 1.977 sum 3.640 4.289 -0.760 5.677 Atomic orbital electron populations 1.23252 0.78902 1.04954 1.01908 1.88080 1.21950 1.22810 1.93852 1.24342 1.01121 0.86145 0.89754 1.21489 0.74120 0.78718 0.87755 1.93177 1.37342 1.89345 1.96838 1.93189 1.95034 1.71119 1.57651 1.93174 1.68693 1.57016 1.96590 1.23658 0.99739 1.01762 0.92145 1.22038 0.98112 0.95275 0.95326 0.85255 1.23136 0.83197 0.96218 0.97262 1.86441 1.38901 1.36488 1.63564 1.21132 0.88344 0.79222 0.75855 1.90913 1.33337 1.59593 1.58348 1.19309 0.94206 0.97286 1.06984 1.18068 0.82421 0.90098 0.97427 1.91565 1.47391 1.78631 1.93816 1.21076 0.90441 1.02797 1.01981 1.20595 0.94977 0.94001 0.94969 1.25523 1.01215 1.10879 0.82597 1.86626 1.93675 1.36255 1.18903 0.93889 0.72392 0.75139 0.90159 1.21439 0.99880 0.95454 0.98149 1.21651 0.88577 0.99087 0.93781 1.23396 0.90129 1.06161 0.94950 0.91367 0.87544 0.93215 0.85167 0.88186 0.90391 0.90644 0.83234 0.84946 0.76045 1.23531 1.19204 0.81036 0.80218 0.88892 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 113.37 1.18 1.18 16 2 O -0.35 -0.66 8.34 -148.98 -1.24 -1.90 16 3 C 0.03 -0.05 0.85 -10.21 -0.01 -0.05 16 4 C 0.43 0.71 2.51 71.98 0.18 0.89 16 5 F -0.19 -0.47 15.24 44.97 0.69 0.21 16 6 F -0.19 -1.14 17.09 44.97 0.77 -0.37 16 7 F -0.17 -0.12 15.83 44.97 0.71 0.60 16 8 C -0.14 0.87 6.52 31.12 0.20 1.08 16 9 C -0.09 0.56 4.20 -10.26 -0.04 0.52 16 10 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 11 C 0.08 -0.03 5.07 71.98 0.37 0.33 16 12 O -0.34 -0.39 9.47 -56.45 -0.53 -0.93 16 13 C 0.51 3.38 7.89 70.28 0.55 3.94 16 14 O -0.53 -7.64 15.13 19.89 0.30 -7.34 16 15 C -0.18 -0.45 5.88 -20.06 -0.12 -0.56 16 16 C 0.14 0.72 7.29 22.69 0.17 0.89 16 17 F -0.14 -1.60 15.55 44.97 0.70 -0.90 16 18 C -0.14 -0.02 9.64 22.28 0.21 0.19 16 19 C -0.04 0.21 5.36 -19.82 -0.11 0.11 16 20 C -0.09 0.55 2.80 71.24 0.20 0.75 16 21 O -0.55 0.99 12.83 -148.98 -1.91 -0.92 16 22 Si 0.78 -6.23 29.87 68.60 2.05 -4.18 16 23 C -0.13 1.05 8.65 22.23 0.19 1.24 16 24 C -0.01 0.07 9.62 22.53 0.22 0.29 16 25 C -0.11 0.54 6.91 31.18 0.22 0.76 16 26 H 0.07 -0.29 6.76 -2.39 -0.02 -0.31 16 27 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.05 -0.01 6.25 -2.39 -0.01 -0.03 16 29 H 0.13 -1.22 8.07 -2.39 -0.02 -1.24 16 30 H 0.10 -0.71 6.70 -2.39 -0.02 -0.72 16 31 H 0.08 0.26 6.09 -2.39 -0.01 0.24 16 32 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.13 -0.95 7.96 -2.39 -0.02 -0.97 16 35 H 0.39 -3.09 8.70 -74.05 -0.64 -3.73 16 36 H -0.31 -0.38 7.11 99.48 0.71 0.32 16 37 H -0.27 1.61 7.00 99.48 0.70 2.30 16 38 H 0.17 -2.33 4.81 -2.91 -0.01 -2.35 16 39 H 0.18 -1.96 7.61 -2.91 -0.02 -1.98 16 40 H 0.09 -0.30 8.10 -2.39 -0.02 -0.32 16 41 H 0.13 -1.08 7.01 -2.39 -0.02 -1.10 16 Total: 0.00 -21.26 357.62 5.45 -15.82 By element: Atomic # 1 Polarization: -12.12 SS G_CDS: 0.51 Total: -11.61 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 3.41 Total: 11.53 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -3.39 Total: -11.09 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 2.87 Total: -0.46 kcal Atomic # 14 Polarization: -6.23 SS G_CDS: 2.05 Total: -4.18 kcal Total: -21.26 5.45 -15.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946254_17321610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.079 kcal (2) G-P(sol) polarization free energy of solvation -21.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds