Wall clock time and date at job start Sat Mar 6 2021 00:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47388 * 2 1 4 4 C 1.50704 * 109.46518 * 119.99948 * 2 1 3 5 5 C 1.35188 * 125.47900 * 64.97747 * 4 2 1 6 6 C 1.40278 * 107.20786 * 179.75610 * 5 4 2 7 7 C 1.37999 * 106.52619 * 0.37682 * 6 5 4 8 8 C 1.41533 * 126.10608 * 179.87975 * 7 6 5 9 9 C 1.35754 * 119.99926 * 179.71378 * 8 7 6 10 10 C 1.41292 * 120.00084 * 180.02562 * 9 8 7 11 11 O 1.21710 * 119.99933 * 0.02562 * 10 9 8 12 12 O 1.35002 * 119.99962 * 180.02562 * 10 9 8 13 13 C 1.42904 * 116.99692 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46824 * 180.02562 * 13 12 10 15 15 O 1.20760 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00155 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.46677 * 314.06279 * 16 14 13 18 18 C 1.52998 * 109.47242 * 74.06071 * 16 14 13 19 19 C 1.53007 * 109.46993 * 60.00060 * 18 16 14 20 20 C 1.53004 * 109.46631 * 60.00076 * 19 18 16 21 21 H 1.09005 * 109.47057 * 60.00090 * 20 19 18 22 22 C 1.53003 * 109.46750 * 179.97438 * 20 19 18 23 23 F 1.39898 * 109.46706 * 179.97438 * 22 20 19 24 24 F 1.39895 * 109.47222 * 300.00166 * 22 20 19 25 25 F 1.39903 * 109.46733 * 60.00151 * 22 20 19 26 26 C 1.52994 * 109.47494 * 300.00028 * 20 19 18 27 27 C 1.52994 * 109.47481 * 194.06592 * 16 14 13 28 28 O 1.34005 * 125.47941 * 244.96780 * 4 2 1 29 29 H 0.96708 * 113.99992 * 300.00545 * 1 2 3 30 30 H 1.09001 * 109.46766 * 239.99490 * 2 1 3 31 31 H 1.48501 * 110.00061 * 299.99720 * 3 2 1 32 32 H 1.48502 * 110.00085 * 61.31687 * 3 2 1 33 33 H 1.08000 * 126.39537 * 0.02617 * 5 4 2 34 34 H 1.08005 * 126.73920 * 180.23726 * 6 5 4 35 35 H 1.07995 * 120.00255 * 359.71660 * 8 7 6 36 36 H 1.08003 * 120.00091 * 0.02562 * 9 8 7 37 37 H 1.08995 * 109.46974 * 299.99941 * 13 12 10 38 38 H 1.08998 * 109.47150 * 60.00103 * 13 12 10 39 39 H 1.08995 * 109.47301 * 180.02562 * 18 16 14 40 40 H 1.09000 * 109.47165 * 300.00293 * 18 16 14 41 41 H 1.08995 * 109.47292 * 300.00244 * 19 18 16 42 42 H 1.09001 * 109.46752 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46718 * 300.00532 * 26 20 19 44 44 H 1.09000 * 109.47288 * 180.02562 * 26 20 19 45 45 H 1.08996 * 109.47372 * 59.99627 * 27 16 14 46 46 H 1.08995 * 109.47208 * 179.97438 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7536 -2.0218 1.5068 6 6 2.3778 -2.2749 2.7374 7 6 2.9092 -1.0743 3.1622 8 6 3.6284 -0.8585 4.3620 9 6 4.1030 0.3790 4.6556 10 6 4.8214 0.5943 5.8531 11 8 5.0152 -0.3298 6.6210 12 8 5.2929 1.8251 6.1454 13 6 6.0108 1.9702 7.3724 14 6 6.4558 3.4016 7.5277 15 8 6.1865 4.2135 6.6753 16 6 7.2380 3.8196 8.7461 17 1 6.7665 3.4089 9.6390 18 6 8.6705 3.2933 8.6379 19 6 9.3323 3.8696 7.3845 20 6 9.3556 5.3967 7.4766 21 1 9.9213 5.6990 8.3579 22 6 10.0179 5.9731 6.2235 23 9 10.0387 7.3694 6.3075 24 9 11.3278 5.4918 6.1251 25 9 9.2922 5.5851 5.0921 26 6 7.9231 5.9231 7.5849 27 6 7.2613 5.3466 8.8382 28 8 2.6257 -0.1439 2.2267 29 1 -0.3933 0.4418 0.7651 30 1 1.7923 -0.5139 -0.8900 31 1 1.5616 2.4678 -1.2085 32 1 1.5879 2.4585 1.2242 33 1 1.2327 -2.7413 0.8926 34 1 2.4300 -3.2228 3.2524 35 1 3.7997 -1.6783 5.0438 36 1 3.9314 1.1990 3.9740 37 1 5.3635 1.6989 8.2063 38 1 6.8834 1.3171 7.3623 39 1 9.2361 3.5952 9.5193 40 1 8.6539 2.2053 8.5723 41 1 8.7666 3.5674 6.5032 42 1 10.3530 3.4950 7.3077 43 1 7.3574 5.6207 6.7035 44 1 7.9397 7.0110 7.6500 45 1 6.2408 5.7216 8.9153 46 1 7.8266 5.6488 9.7197 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_12428076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:34:47 Heat of formation + Delta-G solvation = -264.112696 kcal Electronic energy + Delta-G solvation = -36015.939502 eV Core-core repulsion = 30425.085553 eV Total energy + Delta-G solvation = -5590.853949 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.126 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.15485 -48.64878 -48.63248 -43.80898 -42.07722 -41.26021 -38.53184 -38.21943 -37.67615 -35.47055 -34.20642 -33.51482 -32.00922 -31.39923 -30.12600 -27.76422 -26.77906 -24.75602 -23.88011 -23.54862 -23.12042 -22.13934 -21.90710 -20.80914 -20.08214 -19.37222 -19.28634 -19.22997 -18.68106 -18.60208 -17.96070 -17.85742 -17.61543 -17.30290 -16.74409 -16.62672 -16.15374 -15.88681 -15.84806 -15.65062 -15.54981 -15.21374 -15.08802 -14.84261 -14.80845 -14.77476 -14.49878 -14.47794 -14.23840 -14.09233 -14.07500 -13.95789 -13.62851 -13.51653 -13.37512 -13.23883 -13.19505 -12.95487 -12.85810 -12.21218 -12.17640 -12.09948 -11.89905 -11.88718 -11.83885 -11.39134 -11.27316 -11.02419 -10.80354 -10.28354 -9.16772 -4.99471 -0.94050 0.76180 0.81824 1.10136 1.42088 1.43995 1.50940 1.68392 1.77121 1.87685 2.04994 2.75673 2.89995 2.95639 3.03686 3.18484 3.46139 3.57331 3.65269 3.70709 3.82245 3.84666 3.94575 3.98134 4.02432 4.04900 4.12489 4.15571 4.18094 4.27603 4.36569 4.41445 4.49535 4.52794 4.63760 4.69841 4.76204 4.84477 4.90349 4.93635 4.99851 5.03749 5.10906 5.15195 5.18511 5.21913 5.35258 5.38435 5.86137 6.28857 6.42794 6.60736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.034 4.034 3 Si 0.758 3.242 4 C -0.028 4.028 5 C -0.189 4.189 6 C -0.135 4.135 7 C -0.036 4.036 8 C 0.058 3.942 9 C -0.223 4.223 10 C 0.508 3.492 11 O -0.533 6.533 12 O -0.350 6.350 13 C 0.003 3.997 14 C 0.361 3.639 15 O -0.455 6.455 16 C -0.127 4.127 17 H 0.143 0.857 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.122 4.122 21 H 0.138 0.862 22 C 0.443 3.557 23 F -0.192 7.192 24 F -0.190 7.190 25 F -0.195 7.195 26 C -0.146 4.146 27 C -0.098 4.098 28 O -0.170 6.170 29 H 0.391 0.609 30 H 0.161 0.839 31 H -0.280 1.280 32 H -0.295 1.295 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.179 0.821 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -4.692 4.591 6.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.143 4.143 3 Si 0.662 3.338 4 C -0.080 4.080 5 C -0.208 4.208 6 C -0.154 4.154 7 C -0.085 4.085 8 C 0.040 3.960 9 C -0.242 4.242 10 C 0.358 3.642 11 O -0.426 6.426 12 O -0.266 6.266 13 C -0.072 4.072 14 C 0.237 3.763 15 O -0.328 6.328 16 C -0.146 4.146 17 H 0.161 0.839 18 C -0.137 4.137 19 C -0.168 4.168 20 C -0.141 4.141 21 H 0.156 0.844 22 C 0.390 3.610 23 F -0.174 7.174 24 F -0.171 7.171 25 F -0.176 7.176 26 C -0.183 4.183 27 C -0.135 4.135 28 O -0.067 6.067 29 H 0.241 0.759 30 H 0.178 0.822 31 H -0.207 1.207 32 H -0.221 1.221 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.196 0.804 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.613 -3.633 3.812 5.301 hybrid contribution -0.969 0.096 0.050 0.975 sum -0.357 -3.537 3.861 5.248 Atomic orbital electron populations 1.86654 1.16988 1.80335 1.50107 1.24508 0.83694 1.11811 0.94316 0.93632 0.90662 0.72287 0.77189 1.23403 0.98621 0.94157 0.91786 1.21883 1.04443 0.95750 0.98707 1.22874 0.97628 0.98684 0.96238 1.19902 1.07618 0.88295 0.92669 1.20917 0.87169 0.97644 0.90245 1.21249 1.05358 1.00014 0.97554 1.19918 0.77194 0.80183 0.86926 1.90906 1.57240 1.43304 1.51183 1.86313 1.66180 1.32908 1.41202 1.23443 0.99013 0.98457 0.86254 1.25033 0.76083 0.87871 0.87353 1.90360 1.46234 1.53927 1.42301 1.21826 0.97410 0.98044 0.97304 0.83928 1.21549 0.92133 1.01871 0.98185 1.21759 1.03357 0.91514 1.00150 1.22572 0.99154 0.98605 0.93769 0.84405 1.21188 0.76735 0.75834 0.87289 1.93160 1.96387 1.31364 1.96485 1.93164 1.39209 1.87922 1.96806 1.93165 1.77742 1.90833 1.55908 1.22040 0.92927 1.01003 1.02343 1.21393 1.01825 0.92658 0.97640 1.84006 1.57414 1.38533 1.26756 0.75921 0.82163 1.20679 1.22134 0.81071 0.79681 0.80393 0.83914 0.86138 0.86267 0.87115 0.88489 0.92776 0.89155 0.89625 0.91168 0.91224 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.21 12.88 -148.98 -1.92 -1.71 16 2 C -0.03 0.09 2.98 71.24 0.21 0.30 16 3 Si 0.76 -0.79 32.10 68.60 2.20 1.42 16 4 C -0.03 0.02 6.20 24.98 0.16 0.17 16 5 C -0.19 0.36 10.76 22.06 0.24 0.59 16 6 C -0.14 0.37 10.90 22.71 0.25 0.61 16 7 C -0.04 0.00 6.84 23.03 0.16 0.16 16 8 C 0.06 -0.04 9.39 22.51 0.21 0.17 16 9 C -0.22 -0.52 9.55 22.45 0.21 -0.31 16 10 C 0.51 2.58 7.68 68.57 0.53 3.10 16 11 O -0.53 -3.98 15.88 19.15 0.30 -3.68 16 12 O -0.35 -1.94 9.64 -52.72 -0.51 -2.44 16 13 C 0.00 0.00 5.77 71.24 0.41 0.41 16 14 C 0.36 -0.33 5.11 29.10 0.15 -0.18 16 15 O -0.46 -3.41 13.37 17.64 0.24 -3.17 16 16 C -0.13 1.06 2.94 -11.54 -0.03 1.02 16 17 H 0.14 -2.03 8.14 -2.38 -0.02 -2.05 16 18 C -0.10 1.04 5.42 30.60 0.17 1.20 16 19 C -0.13 0.54 4.74 30.60 0.15 0.69 16 20 C -0.12 0.25 2.16 -10.79 -0.02 0.23 16 21 H 0.14 -0.96 8.14 -2.38 -0.02 -0.98 16 22 C 0.44 2.00 2.69 71.98 0.19 2.19 16 23 F -0.19 -1.30 16.80 44.97 0.76 -0.55 16 24 F -0.19 -1.01 16.80 44.97 0.76 -0.25 16 25 F -0.19 -1.77 16.28 44.97 0.73 -1.03 16 26 C -0.15 0.04 4.67 30.59 0.14 0.18 16 27 C -0.10 0.58 5.22 30.59 0.16 0.73 16 28 O -0.17 -0.29 8.56 -6.09 -0.05 -0.34 16 29 H 0.39 -2.05 8.70 -74.05 -0.64 -2.69 16 30 H 0.16 -1.10 7.96 -2.39 -0.02 -1.12 16 31 H -0.28 -1.28 7.11 99.48 0.71 -0.57 16 32 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 33 H 0.17 -0.82 8.06 -2.91 -0.02 -0.84 16 34 H 0.19 -1.49 8.06 -2.91 -0.02 -1.51 16 35 H 0.18 -0.67 7.46 -2.91 -0.02 -0.69 16 36 H 0.14 0.32 7.72 -2.91 -0.02 0.30 16 37 H 0.12 -0.62 8.13 -2.39 -0.02 -0.64 16 38 H 0.12 -0.59 7.83 -2.39 -0.02 -0.61 16 39 H 0.11 -1.56 8.14 -2.39 -0.02 -1.58 16 40 H 0.10 -1.24 7.84 -2.39 -0.02 -1.26 16 41 H 0.05 0.03 6.85 -2.39 -0.02 0.01 16 42 H 0.09 -0.48 7.80 -2.39 -0.02 -0.50 16 43 H 0.09 0.52 4.73 -2.38 -0.01 0.50 16 44 H 0.07 0.03 7.80 -2.39 -0.02 0.01 16 45 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 Total: 0.00 -23.25 399.18 6.22 -17.03 By element: Atomic # 1 Polarization: -16.99 SS G_CDS: 0.44 Total: -16.55 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 3.27 Total: 11.28 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.94 Total: -11.35 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 2.24 Total: -1.83 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.20 Total: 1.42 kcal Total: -23.25 6.22 -17.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_12428076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.083 kcal (2) G-P(sol) polarization free energy of solvation -23.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds