Wall clock time and date at job start Sat Mar 6 2021 01:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86294 * 109.46929 * 2 1 4 4 C 1.50701 * 109.46989 * 119.99934 * 2 1 3 5 5 C 1.35174 * 125.48386 * 64.99603 * 4 2 1 6 6 C 1.40281 * 107.21642 * 180.02562 * 5 4 2 7 7 C 1.38007 * 106.51967 * 0.02562 * 6 5 4 8 8 C 1.41531 * 126.10189 * 180.02562 * 7 6 5 9 9 C 1.35759 * 119.99335 * 180.02562 * 8 7 6 10 10 C 1.41290 * 119.99318 * 179.97438 * 9 8 7 11 11 O 1.21709 * 120.00479 * 359.97438 * 10 9 8 12 12 O 1.34999 * 119.99571 * 179.97438 * 10 9 8 13 13 C 1.42903 * 116.99922 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47029 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.46750 * 179.97438 * 14 13 12 16 16 O 1.42960 * 109.47395 * 299.99910 * 14 13 12 17 17 C 1.43117 * 113.88330 * 178.72413 * 16 14 13 18 18 C 1.53256 * 108.92792 * 302.22877 * 17 16 14 19 19 H 1.08996 * 109.57669 * 294.45156 * 18 17 16 20 20 N 1.46503 * 109.57764 * 174.19460 * 18 17 16 21 21 C 1.34524 * 124.45776 * 120.25438 * 20 18 17 22 22 O 1.21453 * 125.70963 * 359.96790 * 21 20 18 23 23 C 1.47810 * 108.58056 * 180.23009 * 21 20 18 24 24 C 1.40954 * 105.87965 * 359.57494 * 23 21 20 25 25 C 1.38563 * 119.81856 * 180.18268 * 24 23 21 26 26 C 1.38616 * 119.72058 * 0.30670 * 25 24 23 27 27 C 1.38228 * 120.45823 * 359.97132 * 26 25 24 28 28 C 1.38573 * 134.29810 * 180.50667 * 23 21 20 29 29 C 1.34519 * 124.46268 * 300.21773 * 20 18 17 30 30 O 1.21445 * 125.70911 * 0.05725 * 29 20 18 31 31 C 1.53262 * 108.95003 * 54.32307 * 18 17 16 32 32 O 1.42973 * 109.46952 * 59.99985 * 14 13 12 33 33 O 1.34014 * 125.47530 * 245.35377 * 4 2 1 34 34 H 0.96701 * 114.00217 * 300.00350 * 1 2 3 35 35 H 1.09003 * 109.47010 * 239.99356 * 2 1 3 36 36 H 1.48503 * 109.99944 * 178.68070 * 3 2 1 37 37 H 1.48502 * 109.99839 * 299.99602 * 3 2 1 38 38 H 1.08005 * 126.39310 * 0.02562 * 5 4 2 39 39 H 1.08003 * 126.74228 * 180.02562 * 6 5 4 40 40 H 1.07994 * 120.00524 * 359.97438 * 8 7 6 41 41 H 1.07997 * 120.00884 * 359.97438 * 9 8 7 42 42 H 1.08998 * 109.47284 * 59.99734 * 13 12 10 43 43 H 1.09004 * 109.46672 * 299.99686 * 13 12 10 44 44 H 1.09001 * 109.67533 * 182.33072 * 17 16 14 45 45 H 1.09003 * 109.45829 * 62.00122 * 17 16 14 46 46 H 1.07997 * 120.14312 * 180.27600 * 25 24 23 47 47 H 1.07995 * 119.76704 * 180.02562 * 26 25 24 48 48 H 1.08008 * 119.76489 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.13310 * 359.26398 * 28 23 21 50 50 H 1.08999 * 109.55338 * 65.37900 * 31 18 17 51 51 H 1.08994 * 109.56283 * 185.59227 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7542 -2.0217 1.5067 6 6 2.3729 -2.2735 2.7403 7 6 2.9078 -1.0736 3.1631 8 6 3.6261 -0.8576 4.3633 9 6 4.0989 0.3805 4.6578 10 6 4.8155 0.5963 5.8562 11 8 5.0085 -0.3276 6.6247 12 8 5.2862 1.8273 6.1488 13 6 6.0023 1.9730 7.3769 14 6 6.4545 3.4262 7.5342 15 1 7.0003 3.5374 8.4711 16 8 7.3052 3.7815 6.4415 17 6 7.7616 5.1374 6.4797 18 6 6.5462 6.0708 6.4986 19 1 6.0021 5.9810 5.5584 20 7 6.9927 7.4546 6.6771 21 6 6.7573 8.4492 5.8024 22 8 6.1508 8.3437 4.7555 23 6 7.3658 9.6905 6.3257 24 6 7.9538 9.3418 7.5584 25 6 8.6098 10.3064 8.3061 26 6 8.6775 11.6097 7.8390 27 6 8.0958 11.9528 6.6329 28 6 7.4364 10.9987 5.8742 29 6 7.6914 7.8982 7.7376 30 8 8.0474 7.2252 8.6837 31 6 5.6308 5.6725 7.6616 32 8 5.3099 4.2829 7.5453 33 8 2.6196 -0.1421 2.2301 34 1 -0.3934 0.4417 0.7650 35 1 1.7923 -0.5139 -0.8900 36 1 3.5345 1.7703 0.0321 37 1 1.5614 2.4678 -1.2086 38 1 1.2335 -2.7414 0.8923 39 1 2.4212 -3.2203 3.2575 40 1 3.7974 -1.6773 5.0452 41 1 3.9274 1.2004 3.9761 42 1 6.8750 1.3201 7.3683 43 1 5.3537 1.7017 8.2100 44 1 8.3678 5.3455 5.5981 45 1 8.3568 5.2950 7.3792 46 1 9.0661 10.0441 9.2492 47 1 9.1889 12.3620 8.4210 48 1 8.1556 12.9717 6.2794 49 1 6.9834 11.2725 4.9327 50 1 6.1434 5.8508 8.6068 51 1 4.7162 6.2641 7.6252 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_13594054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:15:59 Heat of formation + Delta-G solvation = -152.865434 kcal Electronic energy + Delta-G solvation = -42212.699094 eV Core-core repulsion = 36399.739404 eV Total energy + Delta-G solvation = -5812.959690 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.133 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.79822 -43.71578 -41.85037 -41.09963 -39.95743 -39.48669 -38.12853 -37.91422 -37.19627 -37.10566 -35.44736 -34.55065 -34.18999 -32.16795 -31.92675 -31.15084 -29.91550 -27.71858 -27.51374 -26.35766 -25.49514 -24.84447 -23.67129 -23.48984 -23.10658 -22.41594 -21.94548 -21.01646 -20.69968 -19.34995 -19.18611 -18.98045 -18.79922 -18.55193 -18.08297 -17.74093 -17.64561 -17.56277 -17.29810 -17.23741 -17.00032 -16.67223 -16.41385 -16.18155 -16.12243 -15.89386 -15.76722 -15.49240 -15.33593 -15.07222 -14.88320 -14.79713 -14.63465 -14.47268 -14.41199 -14.13084 -14.06352 -13.81294 -13.80785 -13.53814 -13.29900 -13.25026 -12.83539 -12.77384 -12.69675 -12.47883 -12.27767 -12.25511 -11.87961 -11.82792 -11.79632 -11.70718 -11.61939 -10.98509 -10.97580 -10.87162 -10.66390 -10.26364 -10.25081 -9.15159 -5.04784 -1.11933 -0.91869 -0.06543 0.78119 0.86574 0.88166 1.11351 1.40133 1.46004 1.61024 1.64464 1.74450 1.86959 2.06981 2.17610 2.24020 2.43946 2.56770 3.06427 3.14401 3.21733 3.28820 3.42215 3.47392 3.53235 3.63129 3.68763 3.81705 3.85446 3.91328 4.00775 4.03784 4.04045 4.06417 4.09388 4.14335 4.17101 4.21304 4.26759 4.29785 4.41165 4.44680 4.51297 4.55263 4.64670 4.77847 4.80049 4.87354 4.93521 5.05425 5.17704 5.22909 5.24897 5.34072 5.35145 5.42809 5.64906 5.71019 5.87388 5.91545 6.33849 6.57964 6.61675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.025 4.025 3 Si 0.765 3.235 4 C -0.031 4.031 5 C -0.190 4.190 6 C -0.138 4.138 7 C -0.034 4.034 8 C 0.054 3.946 9 C -0.216 4.216 10 C 0.506 3.494 11 O -0.540 6.540 12 O -0.342 6.342 13 C 0.080 3.920 14 C 0.241 3.759 15 H 0.108 0.892 16 O -0.386 6.386 17 C 0.051 3.949 18 C 0.076 3.924 19 H 0.119 0.881 20 N -0.569 5.569 21 C 0.576 3.424 22 O -0.488 6.488 23 C -0.159 4.159 24 C -0.159 4.159 25 C -0.042 4.042 26 C -0.084 4.084 27 C -0.084 4.084 28 C -0.045 4.045 29 C 0.576 3.424 30 O -0.481 6.481 31 C 0.051 3.949 32 O -0.384 6.384 33 O -0.166 6.166 34 H 0.400 0.600 35 H 0.142 0.858 36 H -0.295 1.295 37 H -0.276 1.276 38 H 0.170 0.830 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.156 0.844 47 H 0.176 0.824 48 H 0.176 0.824 49 H 0.153 0.847 50 H 0.076 0.924 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 7.242 2.288 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.136 4.136 3 Si 0.669 3.331 4 C -0.083 4.083 5 C -0.209 4.209 6 C -0.157 4.157 7 C -0.082 4.082 8 C 0.035 3.965 9 C -0.235 4.235 10 C 0.356 3.644 11 O -0.434 6.434 12 O -0.258 6.258 13 C 0.006 3.994 14 C 0.146 3.854 15 H 0.125 0.875 16 O -0.305 6.305 17 C -0.026 4.026 18 C -0.026 4.026 19 H 0.137 0.863 20 N -0.314 5.314 21 C 0.367 3.633 22 O -0.361 6.361 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.061 4.061 26 C -0.102 4.102 27 C -0.102 4.102 28 C -0.063 4.063 29 C 0.368 3.632 30 O -0.353 6.353 31 C -0.026 4.026 32 O -0.303 6.303 33 O -0.064 6.064 34 H 0.251 0.749 35 H 0.159 0.841 36 H -0.222 1.222 37 H -0.203 1.203 38 H 0.188 0.812 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.094 0.906 46 H 0.174 0.826 47 H 0.194 0.806 48 H 0.193 0.807 49 H 0.171 0.829 50 H 0.094 0.906 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.365 6.853 1.367 7.120 hybrid contribution 0.278 -0.823 0.011 0.869 sum 1.643 6.031 1.377 6.400 Atomic orbital electron populations 1.86543 1.15671 1.82051 1.50397 1.24464 0.85557 1.10783 0.92757 0.93341 0.78359 0.75806 0.85562 1.23477 0.98789 0.94203 0.91808 1.21862 1.04602 0.95853 0.98619 1.22854 0.97792 0.98738 0.96330 1.19868 1.07360 0.88281 0.92693 1.20884 0.87584 0.97685 0.90309 1.21270 1.04911 1.00029 0.97293 1.19989 0.77143 0.80270 0.87000 1.90902 1.57463 1.43604 1.51453 1.86323 1.65957 1.32560 1.40929 1.22869 0.97627 0.93062 0.85872 1.23879 0.81857 0.88985 0.90629 0.87514 1.88218 1.65556 1.27360 1.49385 1.23031 0.94215 0.80350 1.04987 1.22580 0.98173 0.78688 1.03197 0.86333 1.46466 1.52093 1.10532 1.22267 1.18784 0.77627 0.84749 0.82130 1.90828 1.38375 1.84848 1.22028 1.20435 1.03751 0.94885 0.97198 1.20450 1.04879 0.93082 0.97848 1.21164 0.93994 0.91606 0.99341 1.21968 0.96621 0.95622 0.95953 1.21954 0.93654 1.00994 0.93551 1.21160 0.95520 0.89160 1.00477 1.18731 0.75584 0.88436 0.80494 1.90793 1.49371 1.64068 1.31106 1.23025 1.00614 0.82353 0.96579 1.88227 1.32243 1.16093 1.93731 1.83991 1.57546 1.38193 1.26634 0.74881 0.84051 1.22198 1.20256 0.81211 0.79846 0.80736 0.83404 0.87991 0.87784 0.86803 0.90625 0.82633 0.80614 0.80672 0.82906 0.90635 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.08 12.88 -148.98 -1.92 -0.84 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.76 -0.37 32.10 68.60 2.20 1.83 16 4 C -0.03 -0.02 6.20 24.98 0.15 0.14 16 5 C -0.19 0.06 10.76 22.06 0.24 0.30 16 6 C -0.14 0.13 10.90 22.71 0.25 0.38 16 7 C -0.03 -0.06 6.84 23.03 0.16 0.10 16 8 C 0.05 0.08 9.39 22.51 0.21 0.29 16 9 C -0.22 -0.94 9.55 22.45 0.21 -0.73 16 10 C 0.51 4.23 7.68 68.57 0.53 4.76 16 11 O -0.54 -6.34 15.88 19.15 0.30 -6.04 16 12 O -0.34 -3.04 9.89 -52.55 -0.52 -3.56 16 13 C 0.08 0.38 5.47 71.98 0.39 0.77 16 14 C 0.24 1.06 3.59 71.98 0.26 1.32 16 15 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 16 O -0.39 -2.66 10.43 -121.89 -1.27 -3.93 16 17 C 0.05 0.20 6.34 72.07 0.46 0.66 16 18 C 0.08 0.33 3.07 45.16 0.14 0.46 16 19 H 0.12 0.76 7.59 -2.39 -0.02 0.75 16 20 N -0.57 -2.21 2.53 -739.57 -1.87 -4.08 16 21 C 0.58 3.02 8.02 86.82 0.70 3.72 16 22 O -0.49 -5.26 17.44 -3.57 -0.06 -5.33 16 23 C -0.16 -0.06 6.41 -20.00 -0.13 -0.19 16 24 C -0.16 0.05 6.41 -20.00 -0.13 -0.08 16 25 C -0.04 0.25 10.09 22.44 0.23 0.47 16 26 C -0.08 0.88 10.04 22.36 0.22 1.10 16 27 C -0.08 0.85 10.03 22.35 0.22 1.08 16 28 C -0.04 0.22 10.09 22.44 0.23 0.45 16 29 C 0.58 2.03 7.35 86.82 0.64 2.67 16 30 O -0.48 -3.24 15.17 -3.54 -0.05 -3.30 16 31 C 0.05 0.18 6.33 72.07 0.46 0.64 16 32 O -0.38 -2.49 10.43 -121.89 -1.27 -3.77 16 33 O -0.17 -0.45 8.56 -6.16 -0.05 -0.50 16 34 H 0.40 -3.79 8.70 -74.06 -0.64 -4.43 16 35 H 0.14 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 37 H -0.28 -1.30 7.11 99.48 0.71 -0.59 16 38 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 39 H 0.18 -1.11 8.06 -2.91 -0.02 -1.14 16 40 H 0.18 -0.17 7.46 -2.91 -0.02 -0.19 16 41 H 0.15 0.46 7.72 -2.91 -0.02 0.44 16 42 H 0.10 0.30 8.13 -2.39 -0.02 0.28 16 43 H 0.10 0.28 8.13 -2.38 -0.02 0.26 16 44 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.08 0.27 6.68 -2.39 -0.02 0.26 16 46 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 47 H 0.18 -2.91 8.06 -2.91 -0.02 -2.93 16 48 H 0.18 -2.83 8.06 -2.91 -0.02 -2.86 16 49 H 0.15 -1.10 8.06 -2.91 -0.02 -1.13 16 50 H 0.08 0.25 6.67 -2.39 -0.02 0.24 16 51 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -26.80 448.87 1.55 -25.25 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: 0.42 Total: -14.31 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 5.65 Total: 18.56 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -1.87 Total: -4.08 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -4.85 Total: -27.26 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: 2.20 Total: 1.83 kcal Total: -26.80 1.55 -25.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_13594054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.611 kcal (2) G-P(sol) polarization free energy of solvation -26.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds