Wall clock time and date at job start Sat Mar 6 2021 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00247 * 2 1 3 5 5 O 1.42901 * 109.47048 * 120.00806 * 2 1 3 6 6 C 1.42897 * 114.00361 * 59.99541 * 5 2 1 7 7 H 1.08993 * 112.84571 * 18.80633 * 6 5 2 8 8 C 1.53780 * 113.61582 * 150.00205 * 6 5 2 9 9 C 1.53773 * 87.08305 * 139.97987 * 8 6 5 10 10 H 1.09002 * 113.61165 * 89.19994 * 9 8 6 11 11 C 1.53001 * 113.61551 * 220.02053 * 9 8 6 12 12 O 1.42902 * 109.47044 * 183.47140 * 11 9 8 13 13 C 1.34998 * 116.99792 * 179.97438 * 12 11 9 14 14 O 1.21706 * 120.00207 * 359.97438 * 13 12 11 15 15 C 1.41289 * 119.99994 * 179.97438 * 13 12 11 16 16 C 1.35755 * 120.00122 * 179.97438 * 15 13 12 17 17 C 1.41529 * 120.00029 * 180.02562 * 16 15 13 18 18 C 1.38002 * 126.10875 * 180.02562 * 17 16 15 19 19 C 1.40275 * 106.52542 * 180.26115 * 18 17 16 20 20 C 1.35185 * 107.21284 * 359.61062 * 19 18 17 21 21 C 1.50697 * 125.47956 * 180.15126 * 20 19 18 22 22 O 1.42898 * 109.47773 * 65.26515 * 21 20 19 23 23 Si 1.86309 * 109.46950 * 185.26541 * 21 20 19 24 24 O 1.34007 * 109.03909 * 0.39380 * 20 19 18 25 25 C 1.53784 * 87.17505 * 334.60976 * 9 8 6 26 26 H 1.08999 * 109.46436 * 299.99770 * 1 2 3 27 27 H 1.08998 * 109.46512 * 59.99664 * 1 2 3 28 28 H 1.08991 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47318 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47640 * 300.00453 * 3 2 1 31 31 H 1.08999 * 109.46611 * 60.00164 * 3 2 1 32 32 H 1.09001 * 109.47135 * 300.00594 * 4 2 1 33 33 H 1.09004 * 109.46851 * 59.99951 * 4 2 1 34 34 H 1.08992 * 109.47196 * 179.97438 * 4 2 1 35 35 H 1.09009 * 113.61377 * 25.42916 * 8 6 5 36 36 H 1.08996 * 113.61432 * 254.53590 * 8 6 5 37 37 H 1.08994 * 109.47340 * 63.47198 * 11 9 8 38 38 H 1.09000 * 109.46929 * 303.47297 * 11 9 8 39 39 H 1.08000 * 119.99667 * 0.02562 * 15 13 12 40 40 H 1.08000 * 120.00210 * 0.02562 * 16 15 13 41 41 H 1.08002 * 126.73326 * 359.97438 * 18 17 16 42 42 H 1.08002 * 126.39388 * 179.75440 * 19 18 17 43 43 H 1.09001 * 109.46809 * 305.25623 * 21 20 19 44 44 H 0.96692 * 113.99854 * 59.99580 * 22 21 20 45 45 H 1.48500 * 110.00101 * 58.67690 * 23 21 20 46 46 H 1.48495 * 109.99986 * 179.97438 * 23 21 20 47 47 H 1.09003 * 113.61154 * 139.93573 * 25 9 8 48 48 H 1.08997 * 113.61468 * 270.84431 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0064 -0.6738 1.1667 6 6 1.5847 -2.0356 1.2643 7 1 1.2523 -2.4451 0.3105 8 6 2.5837 -2.9381 2.0076 9 6 1.3667 -3.6121 2.6629 10 1 0.9745 -4.4543 2.0928 11 6 1.5712 -3.9404 4.1432 12 8 0.4244 -4.6331 4.6403 13 6 0.4446 -4.9982 5.9398 14 8 1.4112 -4.7352 6.6309 15 6 -0.6565 -5.6858 6.4976 16 6 -0.6360 -6.0535 7.8043 17 6 -1.7387 -6.7427 8.3628 18 6 -1.8516 -7.1736 9.6690 19 6 -3.0984 -7.8078 9.7736 20 6 -3.6880 -7.7338 8.5594 21 6 -5.0469 -8.2848 8.2118 22 8 -6.0494 -7.5780 8.9448 23 14 -5.3520 -8.0789 6.3855 24 8 -2.8675 -7.0963 7.7131 25 6 0.6053 -2.2977 2.4230 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 3.2172 -2.4000 2.7129 36 1 3.1477 -3.5994 1.3499 37 1 1.7092 -3.0165 4.7046 38 1 2.4536 -4.5701 4.2572 39 1 -1.5141 -5.9196 5.8842 40 1 0.2218 -5.8201 8.4176 41 1 -1.1212 -7.0509 10.4551 42 1 -3.5113 -8.2673 10.6595 43 1 -5.0865 -9.3432 8.4696 44 1 -6.0720 -6.6283 8.7647 45 1 -4.2979 -8.7829 5.6118 46 1 -6.6887 -8.6190 6.0297 47 1 -0.4256 -2.4431 2.1000 48 1 0.6969 -1.5843 3.2419 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_11946942_14598394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:14 Heat of formation + Delta-G solvation = -106.155429 kcal Electronic energy + Delta-G solvation = -28168.965601 eV Core-core repulsion = 23966.011642 eV Total energy + Delta-G solvation = -4202.953960 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.82315 -41.62069 -40.75466 -38.63258 -38.15397 -37.36341 -35.39555 -34.22651 -33.87979 -31.36286 -29.78214 -28.40981 -28.37612 -27.50827 -26.64185 -24.77014 -23.42872 -23.14221 -21.94358 -20.91164 -20.80051 -20.37236 -19.17047 -18.54803 -17.93010 -17.67402 -17.42085 -17.37397 -17.19053 -16.54424 -16.13780 -15.95578 -15.87456 -15.75118 -14.79798 -14.64662 -14.47356 -14.39721 -14.17996 -14.08844 -13.99114 -13.68447 -13.50754 -13.41870 -13.32906 -13.06951 -13.03743 -12.90565 -12.80905 -12.67487 -12.38723 -12.18154 -12.16572 -11.86382 -11.85020 -11.70488 -11.45360 -11.30804 -11.13251 -11.02209 -10.73141 -10.34078 -9.15536 -5.12071 -0.88220 0.79678 1.04004 1.38647 1.46190 1.70054 1.81516 1.85560 2.15635 2.72379 3.14498 3.38989 3.47247 3.54434 3.66450 3.75531 3.76647 3.82692 3.88582 3.95562 3.99834 4.05889 4.07505 4.16413 4.19705 4.25626 4.44698 4.50337 4.52335 4.55327 4.59815 4.64183 4.74881 4.75318 4.76787 4.79729 4.81301 4.88166 4.89522 4.91180 4.99134 5.05319 5.09356 5.16366 5.28125 5.28748 5.30533 5.36563 5.51755 5.83683 6.28749 6.41903 6.81967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.092 0.908 8 C -0.127 4.127 9 C -0.111 4.111 10 H 0.104 0.896 11 C 0.079 3.921 12 O -0.347 6.347 13 C 0.502 3.498 14 O -0.513 6.513 15 C -0.198 4.198 16 C 0.033 3.967 17 C -0.013 4.013 18 C -0.148 4.148 19 C -0.181 4.181 20 C -0.029 4.029 21 C -0.031 4.031 22 O -0.529 6.529 23 Si 0.701 3.299 24 O -0.157 6.157 25 C -0.148 4.148 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.385 0.615 45 H -0.252 1.252 46 H -0.245 1.245 47 H 0.073 0.927 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 0.839 -1.882 2.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.280 6.280 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.164 4.164 9 C -0.129 4.129 10 H 0.123 0.877 11 C 0.005 3.995 12 O -0.263 6.263 13 C 0.350 3.650 14 O -0.405 6.405 15 C -0.217 4.217 16 C 0.015 3.985 17 C -0.062 4.062 18 C -0.167 4.167 19 C -0.200 4.200 20 C -0.081 4.081 21 C -0.142 4.142 22 O -0.334 6.334 23 Si 0.601 3.399 24 O -0.053 6.053 25 C -0.186 4.186 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.233 0.767 45 H -0.176 1.176 46 H -0.169 1.169 47 H 0.092 0.908 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.058 0.093 -2.437 3.191 hybrid contribution 0.293 -0.477 0.563 0.794 sum -1.765 -0.384 -1.873 2.602 Atomic orbital electron populations 1.22468 0.95451 1.02532 1.02907 1.21544 0.93262 0.93274 0.85380 1.21767 1.02012 0.93233 1.02611 1.22472 1.02332 1.00853 0.97991 1.88040 1.73803 1.23295 1.42898 1.23608 0.95615 0.82821 0.97568 0.88984 1.23227 0.96383 0.97337 0.99498 1.22363 0.98651 0.98113 0.93805 0.87742 1.22676 0.86547 0.96550 0.93738 1.86205 1.44253 1.68916 1.26977 1.19723 0.87284 0.77466 0.80532 1.90930 1.35434 1.53006 1.61089 1.21322 0.99566 1.04430 0.96413 1.20768 0.93588 0.89403 0.94760 1.19711 0.88257 1.06443 0.91806 1.22515 0.98514 0.99819 0.95831 1.21616 0.95277 1.04567 0.98539 1.23209 0.94915 1.00195 0.89766 1.24499 0.81037 0.98130 1.10524 1.86574 1.52615 1.25370 1.68874 0.94228 0.81142 0.91463 0.73101 1.83989 1.24505 1.57914 1.38927 1.23652 0.99019 0.96314 0.99577 0.91650 0.91554 0.92267 0.91765 0.91070 0.91755 0.92223 0.91367 0.91606 0.88704 0.90362 0.90969 0.91085 0.83737 0.81781 0.82025 0.82421 0.84735 0.76718 1.17561 1.16899 0.90831 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.10 8.38 37.16 0.31 0.41 16 2 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 3 C -0.14 0.03 8.84 37.15 0.33 0.35 16 4 C -0.18 0.12 8.38 37.16 0.31 0.43 16 5 O -0.36 -0.66 10.00 -35.23 -0.35 -1.02 16 6 C 0.06 0.00 2.82 -25.83 -0.07 -0.07 16 7 H 0.09 -0.08 5.54 -51.93 -0.29 -0.37 16 8 C -0.13 0.06 7.47 -25.92 -0.19 -0.14 16 9 C -0.11 0.05 4.00 -89.81 -0.36 -0.31 16 10 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 11 C 0.08 0.09 5.20 37.16 0.19 0.28 16 12 O -0.35 -0.77 10.10 -41.31 -0.42 -1.19 16 13 C 0.50 1.37 7.68 31.89 0.24 1.62 16 14 O -0.51 -2.65 15.88 -19.42 -0.31 -2.96 16 15 C -0.20 -0.13 9.55 -39.31 -0.38 -0.50 16 16 C 0.03 0.00 9.39 -39.22 -0.37 -0.37 16 17 C -0.01 0.00 6.84 -38.41 -0.26 -0.27 16 18 C -0.15 0.06 10.90 -38.90 -0.42 -0.36 16 19 C -0.18 0.03 10.76 -39.90 -0.43 -0.40 16 20 C -0.03 0.00 6.20 -35.40 -0.22 -0.21 16 21 C -0.03 0.04 2.98 36.00 0.11 0.15 16 22 O -0.53 0.62 12.88 -35.23 -0.45 0.16 16 23 Si 0.70 -1.11 32.10 -169.99 -5.46 -6.57 16 24 O -0.16 -0.07 8.56 4.68 0.04 -0.03 16 25 C -0.15 0.01 7.48 -25.82 -0.19 -0.18 16 26 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.06 -0.05 7.02 -51.93 -0.36 -0.41 16 29 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.06 -0.06 6.24 -51.93 -0.32 -0.39 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.09 0.01 8.10 -51.92 -0.42 -0.41 16 36 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 37 H 0.07 0.11 7.86 -51.93 -0.41 -0.30 16 38 H 0.07 0.08 8.13 -51.93 -0.42 -0.34 16 39 H 0.14 -0.09 7.72 -52.49 -0.41 -0.49 16 40 H 0.16 -0.15 7.46 -52.49 -0.39 -0.54 16 41 H 0.16 -0.41 8.06 -52.49 -0.42 -0.83 16 42 H 0.16 -0.20 8.06 -52.49 -0.42 -0.63 16 43 H 0.14 -0.24 7.96 -51.93 -0.41 -0.66 16 44 H 0.38 -1.88 8.70 45.56 0.40 -1.49 16 45 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 46 H -0.24 -0.23 7.11 56.52 0.40 0.18 16 47 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 48 H 0.09 0.07 7.92 -51.93 -0.41 -0.34 16 LS Contribution 401.92 15.07 6.06 6.06 Total: 0.00 -6.77 401.92 -10.12 -16.88 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: -7.72 Total: -11.69 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.50 Total: 0.35 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -1.49 Total: -5.03 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.46 Total: -6.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -6.77 -10.12 -16.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_14598394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.273 kcal (2) G-P(sol) polarization free energy of solvation -6.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds