Wall clock time and date at job start Sat Mar 6 2021 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00247 * 2 1 3 5 5 O 1.42901 * 109.47048 * 120.00806 * 2 1 3 6 6 C 1.42897 * 114.00361 * 59.99541 * 5 2 1 7 7 H 1.08993 * 112.84571 * 18.80633 * 6 5 2 8 8 C 1.53780 * 113.61582 * 150.00205 * 6 5 2 9 9 C 1.53773 * 87.08305 * 139.97987 * 8 6 5 10 10 H 1.09002 * 113.61165 * 89.19994 * 9 8 6 11 11 C 1.53001 * 113.61551 * 220.02053 * 9 8 6 12 12 O 1.42902 * 109.47044 * 183.47140 * 11 9 8 13 13 C 1.34998 * 116.99792 * 179.97438 * 12 11 9 14 14 O 1.21706 * 120.00207 * 359.97438 * 13 12 11 15 15 C 1.41289 * 119.99994 * 179.97438 * 13 12 11 16 16 C 1.35755 * 120.00122 * 179.97438 * 15 13 12 17 17 C 1.41529 * 120.00029 * 180.02562 * 16 15 13 18 18 C 1.38002 * 126.10875 * 180.02562 * 17 16 15 19 19 C 1.40275 * 106.52542 * 180.26115 * 18 17 16 20 20 C 1.35185 * 107.21284 * 359.61062 * 19 18 17 21 21 C 1.50697 * 125.47956 * 180.15126 * 20 19 18 22 22 O 1.42898 * 109.47773 * 65.26515 * 21 20 19 23 23 Si 1.86309 * 109.46950 * 185.26541 * 21 20 19 24 24 O 1.34007 * 109.03909 * 0.39380 * 20 19 18 25 25 C 1.53784 * 87.17505 * 334.60976 * 9 8 6 26 26 H 1.08999 * 109.46436 * 299.99770 * 1 2 3 27 27 H 1.08998 * 109.46512 * 59.99664 * 1 2 3 28 28 H 1.08991 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47318 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47640 * 300.00453 * 3 2 1 31 31 H 1.08999 * 109.46611 * 60.00164 * 3 2 1 32 32 H 1.09001 * 109.47135 * 300.00594 * 4 2 1 33 33 H 1.09004 * 109.46851 * 59.99951 * 4 2 1 34 34 H 1.08992 * 109.47196 * 179.97438 * 4 2 1 35 35 H 1.09009 * 113.61377 * 25.42916 * 8 6 5 36 36 H 1.08996 * 113.61432 * 254.53590 * 8 6 5 37 37 H 1.08994 * 109.47340 * 63.47198 * 11 9 8 38 38 H 1.09000 * 109.46929 * 303.47297 * 11 9 8 39 39 H 1.08000 * 119.99667 * 0.02562 * 15 13 12 40 40 H 1.08000 * 120.00210 * 0.02562 * 16 15 13 41 41 H 1.08002 * 126.73326 * 359.97438 * 18 17 16 42 42 H 1.08002 * 126.39388 * 179.75440 * 19 18 17 43 43 H 1.09001 * 109.46809 * 305.25623 * 21 20 19 44 44 H 0.96692 * 113.99854 * 59.99580 * 22 21 20 45 45 H 1.48500 * 110.00101 * 58.67690 * 23 21 20 46 46 H 1.48495 * 109.99986 * 179.97438 * 23 21 20 47 47 H 1.09003 * 113.61154 * 139.93573 * 25 9 8 48 48 H 1.08997 * 113.61468 * 270.84431 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0064 -0.6738 1.1667 6 6 1.5847 -2.0356 1.2643 7 1 1.2523 -2.4451 0.3105 8 6 2.5837 -2.9381 2.0076 9 6 1.3667 -3.6121 2.6629 10 1 0.9745 -4.4543 2.0928 11 6 1.5712 -3.9404 4.1432 12 8 0.4244 -4.6331 4.6403 13 6 0.4446 -4.9982 5.9398 14 8 1.4112 -4.7352 6.6309 15 6 -0.6565 -5.6858 6.4976 16 6 -0.6360 -6.0535 7.8043 17 6 -1.7387 -6.7427 8.3628 18 6 -1.8516 -7.1736 9.6690 19 6 -3.0984 -7.8078 9.7736 20 6 -3.6880 -7.7338 8.5594 21 6 -5.0469 -8.2848 8.2118 22 8 -6.0494 -7.5780 8.9448 23 14 -5.3520 -8.0789 6.3855 24 8 -2.8675 -7.0963 7.7131 25 6 0.6053 -2.2977 2.4230 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 3.2172 -2.4000 2.7129 36 1 3.1477 -3.5994 1.3499 37 1 1.7092 -3.0165 4.7046 38 1 2.4536 -4.5701 4.2572 39 1 -1.5141 -5.9196 5.8842 40 1 0.2218 -5.8201 8.4176 41 1 -1.1212 -7.0509 10.4551 42 1 -3.5113 -8.2673 10.6595 43 1 -5.0865 -9.3432 8.4696 44 1 -6.0720 -6.6283 8.7647 45 1 -4.2979 -8.7829 5.6118 46 1 -6.6887 -8.6190 6.0297 47 1 -0.4256 -2.4431 2.1000 48 1 0.6969 -1.5843 3.2419 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_14598394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 01:47:13 Heat of formation + Delta-G solvation = -99.579628 kcal Electronic energy + Delta-G solvation = -28168.680453 eV Core-core repulsion = 23966.011642 eV Total energy + Delta-G solvation = -4202.668812 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.79498 -41.77817 -40.78675 -38.68340 -38.04857 -37.48400 -35.44643 -34.19280 -33.89485 -31.35923 -29.82796 -28.36416 -28.33289 -27.50085 -26.62929 -24.77708 -23.45526 -23.10546 -21.98695 -20.92879 -20.79507 -20.38889 -19.22915 -18.53885 -17.97680 -17.67158 -17.54326 -17.42005 -17.16376 -16.54907 -16.11385 -15.96445 -15.83196 -15.72440 -14.86995 -14.67127 -14.48003 -14.39500 -14.12976 -14.05758 -14.03151 -13.69168 -13.50382 -13.41783 -13.29265 -13.09279 -12.98165 -12.81630 -12.77897 -12.64578 -12.40758 -12.24779 -12.18795 -11.94254 -11.87962 -11.77541 -11.56481 -11.32153 -11.15582 -10.98474 -10.64579 -10.35260 -9.14816 -5.02349 -0.91470 0.78497 1.13455 1.41362 1.46411 1.70498 1.76285 1.89820 2.08144 2.73897 3.29924 3.40816 3.50450 3.55325 3.68547 3.77022 3.81656 3.85184 3.92422 3.97961 4.01637 4.07407 4.10667 4.14898 4.21176 4.28711 4.39015 4.50787 4.54414 4.63697 4.64866 4.68927 4.77379 4.77954 4.78790 4.79772 4.85392 4.92187 4.94502 4.95266 5.01339 5.06705 5.13042 5.18063 5.29322 5.34434 5.34556 5.35795 5.42272 5.87033 6.43087 6.59667 6.64765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.177 4.177 5 O -0.382 6.382 6 C 0.061 3.939 7 H 0.104 0.896 8 C -0.126 4.126 9 C -0.102 4.102 10 H 0.115 0.885 11 C 0.077 3.923 12 O -0.349 6.349 13 C 0.502 3.498 14 O -0.546 6.546 15 C -0.213 4.213 16 C 0.050 3.950 17 C -0.031 4.031 18 C -0.141 4.141 19 C -0.192 4.192 20 C -0.029 4.029 21 C -0.029 4.029 22 O -0.539 6.539 23 Si 0.773 3.227 24 O -0.164 6.164 25 C -0.147 4.147 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.155 0.845 40 H 0.171 0.829 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.141 0.859 44 H 0.400 0.600 45 H -0.292 1.292 46 H -0.279 1.279 47 H 0.079 0.921 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 0.536 -1.913 3.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.302 6.302 6 C 0.003 3.997 7 H 0.122 0.878 8 C -0.163 4.163 9 C -0.120 4.120 10 H 0.133 0.867 11 C 0.003 3.997 12 O -0.265 6.265 13 C 0.353 3.647 14 O -0.440 6.440 15 C -0.232 4.232 16 C 0.032 3.968 17 C -0.080 4.080 18 C -0.160 4.160 19 C -0.211 4.211 20 C -0.081 4.081 21 C -0.140 4.140 22 O -0.348 6.348 23 Si 0.677 3.323 24 O -0.061 6.061 25 C -0.185 4.185 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.173 0.827 40 H 0.189 0.811 41 H 0.199 0.801 42 H 0.186 0.814 43 H 0.158 0.842 44 H 0.251 0.749 45 H -0.219 1.219 46 H -0.205 1.205 47 H 0.098 0.902 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.734 -0.182 -2.466 3.686 hybrid contribution 0.452 -0.422 0.615 0.872 sum -2.282 -0.604 -1.851 3.000 Atomic orbital electron populations 1.22440 0.94869 1.02794 1.02973 1.21692 0.93779 0.93347 0.85329 1.21795 1.01636 0.93332 1.02936 1.22449 1.01905 1.01187 0.97858 1.88017 1.74248 1.24167 1.43797 1.23700 0.95632 0.82306 0.98037 0.87791 1.23217 0.96324 0.97351 0.99423 1.22332 0.98685 0.98264 0.92768 0.86657 1.22752 0.86338 0.96047 0.94608 1.86207 1.44592 1.68864 1.26856 1.20056 0.87311 0.76949 0.80417 1.90908 1.36717 1.54640 1.61690 1.21316 0.99467 1.05507 0.96929 1.20861 0.93490 0.87969 0.94494 1.19825 0.88459 1.07435 0.92275 1.22845 0.98696 0.98536 0.95927 1.21863 0.95493 1.04828 0.98951 1.23477 0.95119 0.99675 0.89842 1.24544 0.80564 0.98453 1.10403 1.86545 1.52400 1.26889 1.68940 0.93317 0.77149 0.90293 0.71519 1.83979 1.24719 1.58125 1.39278 1.23616 0.99476 0.96155 0.99258 0.92477 0.90566 0.91904 0.92366 0.89696 0.92480 0.91696 0.90404 0.92252 0.89655 0.89199 0.91813 0.91248 0.82722 0.81143 0.80080 0.81372 0.84221 0.74873 1.21902 1.20491 0.90201 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.22 8.38 71.98 0.60 0.83 16 2 C 0.10 0.06 1.11 -10.79 -0.01 0.05 16 3 C -0.14 -0.01 8.84 71.98 0.64 0.63 16 4 C -0.18 0.31 8.38 71.98 0.60 0.91 16 5 O -0.38 -1.65 10.00 -148.98 -1.49 -3.14 16 6 C 0.06 0.01 2.82 31.18 0.09 0.10 16 7 H 0.10 -0.25 5.54 -2.39 -0.01 -0.27 16 8 C -0.13 0.07 7.47 31.12 0.23 0.30 16 9 C -0.10 0.05 4.00 -10.27 -0.04 0.01 16 10 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 11 C 0.08 0.26 5.20 71.98 0.37 0.63 16 12 O -0.35 -1.88 10.10 -59.17 -0.60 -2.47 16 13 C 0.50 3.31 7.68 68.57 0.53 3.84 16 14 O -0.55 -6.43 15.88 19.16 0.30 -6.12 16 15 C -0.21 -0.40 9.55 22.44 0.21 -0.19 16 16 C 0.05 0.00 9.39 22.51 0.21 0.21 16 17 C -0.03 -0.01 6.84 23.03 0.16 0.15 16 18 C -0.14 0.25 10.90 22.71 0.25 0.50 16 19 C -0.19 0.24 10.76 22.06 0.24 0.48 16 20 C -0.03 0.03 6.20 24.98 0.15 0.18 16 21 C -0.03 0.10 2.98 71.23 0.21 0.31 16 22 O -0.54 1.79 12.88 -148.98 -1.92 -0.13 16 23 Si 0.77 -2.29 32.10 68.60 2.20 -0.09 16 24 O -0.16 -0.10 8.56 -6.17 -0.05 -0.15 16 25 C -0.15 -0.05 7.48 31.18 0.23 0.18 16 26 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 27 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.06 -0.13 7.02 -2.39 -0.02 -0.15 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 30 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 -0.19 6.24 -2.39 -0.01 -0.20 16 33 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.08 0.13 8.10 -2.38 -0.02 0.11 16 36 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.06 0.31 7.86 -2.39 -0.02 0.29 16 38 H 0.07 0.25 8.13 -2.39 -0.02 0.23 16 39 H 0.16 -0.12 7.72 -2.91 -0.02 -0.15 16 40 H 0.17 -0.27 7.46 -2.91 -0.02 -0.29 16 41 H 0.18 -1.18 8.06 -2.91 -0.02 -1.20 16 42 H 0.17 -0.64 8.06 -2.91 -0.02 -0.66 16 43 H 0.14 -0.60 7.96 -2.39 -0.02 -0.62 16 44 H 0.40 -4.37 8.70 -74.06 -0.64 -5.01 16 45 H -0.29 -1.13 7.11 99.48 0.71 -0.42 16 46 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 47 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.08 0.24 7.92 -2.39 -0.02 0.22 16 Total: 0.00 -16.05 401.92 3.47 -12.58 By element: Atomic # 1 Polarization: -9.95 SS G_CDS: 0.34 Total: -9.60 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.68 Total: 9.14 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -3.76 Total: -12.03 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.20 Total: -0.09 kcal Total: -16.05 3.47 -12.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_14598394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.000 kcal (2) G-P(sol) polarization free energy of solvation -16.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds