Wall clock time and date at job start Sat Mar 6 2021 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47374 * 2 1 4 4 C 1.53003 * 109.47024 * 240.00524 * 2 1 3 5 5 O 1.45198 * 109.47426 * 120.00687 * 2 1 3 6 6 C 1.34633 * 117.00065 * 59.99724 * 5 2 1 7 7 O 1.21509 * 120.00049 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00088 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00235 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.84747 * 336.19465 * 9 8 6 11 11 C 1.53774 * 113.61339 * 107.50480 * 9 8 6 12 12 C 1.53775 * 87.08522 * 89.11481 * 11 9 8 13 13 H 1.09002 * 113.69390 * 270.87362 * 12 11 9 14 14 C 1.53000 * 113.61773 * 139.97662 * 12 11 9 15 15 O 1.42895 * 109.46949 * 87.50287 * 14 12 11 16 16 C 1.35001 * 117.00076 * 180.02562 * 15 14 12 17 17 O 1.21715 * 119.99787 * 0.02562 * 16 15 14 18 18 C 1.41291 * 120.00332 * 180.02562 * 16 15 14 19 19 C 1.35752 * 120.00293 * 179.97438 * 18 16 15 20 20 C 1.41526 * 120.00117 * 179.97438 * 19 18 16 21 21 C 1.38003 * 126.10726 * 180.02562 * 20 19 18 22 22 C 1.40285 * 106.52398 * 179.71615 * 21 20 19 23 23 C 1.35184 * 107.20948 * 0.40303 * 22 21 20 24 24 C 1.50696 * 125.47695 * 179.85156 * 23 22 21 25 25 O 1.42903 * 109.47131 * 299.71573 * 24 23 22 26 26 Si 1.86305 * 109.47185 * 179.72114 * 24 23 22 27 27 O 1.34001 * 109.03970 * 359.58718 * 23 22 21 28 28 C 1.53784 * 87.08122 * 25.43187 * 12 11 9 29 29 H 1.09006 * 109.46954 * 299.99231 * 1 2 3 30 30 H 1.09000 * 109.47611 * 59.99038 * 1 2 3 31 31 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47177 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47462 * 300.00289 * 3 2 1 34 34 H 1.09006 * 109.46453 * 60.00462 * 3 2 1 35 35 H 1.08996 * 109.47136 * 299.99730 * 4 2 1 36 36 H 1.09002 * 109.47083 * 59.99738 * 4 2 1 37 37 H 1.09000 * 109.47526 * 179.97438 * 4 2 1 38 38 H 0.97004 * 119.99545 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.61699 * 334.56686 * 11 9 8 40 40 H 1.09004 * 113.61118 * 203.67054 * 11 9 8 41 41 H 1.09010 * 109.46819 * 327.50724 * 14 12 11 42 42 H 1.08997 * 109.47549 * 207.50996 * 14 12 11 43 43 H 1.08001 * 119.99721 * 359.97438 * 18 16 15 44 44 H 1.08002 * 119.99796 * 0.02562 * 19 18 16 45 45 H 1.07993 * 126.74064 * 359.97438 * 21 20 19 46 46 H 1.07997 * 126.39580 * 180.25839 * 22 21 20 47 47 H 1.08999 * 109.47358 * 59.71933 * 24 23 22 48 48 H 0.96700 * 114.00311 * 300.00591 * 25 24 23 49 49 H 1.48499 * 109.99670 * 58.67633 * 26 24 23 50 50 H 1.48497 * 110.00233 * 179.97438 * 26 24 23 51 51 H 1.08999 * 113.61645 * 89.10949 * 28 12 11 52 52 H 1.09001 * 113.61868 * 219.93551 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6522 -1.9724 1.3381 7 8 0.9516 -2.5097 0.5033 8 7 2.0673 -2.6656 2.4169 9 6 1.6732 -4.0668 2.5833 10 1 0.7588 -4.3161 2.0450 11 6 2.8211 -5.0620 2.3455 12 6 3.1486 -4.9209 3.8414 13 1 3.8452 -4.1123 4.0629 14 6 3.5377 -6.2405 4.5108 15 8 4.9432 -6.4527 4.3640 16 6 5.4521 -7.5812 4.9025 17 8 4.7204 -8.3634 5.4806 18 6 6.8342 -7.8543 4.7951 19 6 7.3461 -8.9888 5.3370 20 6 8.7304 -9.2626 5.2289 21 6 9.3816 -10.3716 5.7295 22 6 10.7342 -10.2292 5.3855 23 6 10.8551 -9.0629 4.7127 24 6 12.1385 -8.5043 4.1543 25 8 13.0705 -8.2975 5.2177 26 14 11.7928 -6.8814 3.3073 27 8 9.6493 -8.4863 4.6172 28 6 1.6737 -4.5371 4.0475 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6765 -0.2073 -2.1393 37 1 3.1299 -0.7208 -1.2496 38 1 2.6263 -2.2365 3.0834 39 1 3.6026 -4.6785 1.6895 40 1 2.4831 -6.0595 2.0646 41 1 2.9953 -7.0605 4.0400 42 1 3.2851 -6.1988 5.5703 43 1 7.4835 -7.1604 4.2818 44 1 6.6968 -9.6829 5.8499 45 1 8.9366 -11.1906 6.2749 46 1 11.5306 -10.9209 5.6171 47 1 12.5582 -9.2075 3.4350 48 1 12.7625 -7.6813 5.8964 49 1 11.1907 -5.9243 4.2699 50 1 13.0507 -6.3198 2.7528 51 1 1.0219 -5.3911 4.2319 52 1 1.5286 -3.7308 4.7665 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_15734084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:11:25 Heat of formation + Delta-G solvation = -130.796030 kcal Electronic energy + Delta-G solvation = -33664.069129 eV Core-core repulsion = 28792.174810 eV Total energy + Delta-G solvation = -4871.894319 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.78875 -42.01437 -41.66434 -40.36234 -38.25681 -38.10876 -37.56656 -35.43964 -35.37112 -34.18827 -34.08854 -31.35115 -29.77204 -28.37866 -28.31305 -27.59316 -26.75136 -25.06377 -24.14730 -23.09658 -23.07774 -21.97832 -21.17782 -20.75692 -20.19390 -19.38063 -19.20475 -18.61711 -17.78828 -17.66379 -17.56592 -17.46734 -17.27931 -17.19969 -16.58051 -16.22203 -15.86782 -15.83404 -15.49319 -15.37959 -15.22339 -14.71220 -14.48611 -14.45289 -14.10847 -13.96524 -13.90379 -13.67437 -13.56777 -13.37901 -13.34620 -13.25185 -13.06600 -12.93536 -12.92971 -12.88065 -12.53105 -12.34489 -12.18219 -12.11563 -11.87624 -11.86906 -11.82911 -11.51840 -11.40831 -11.17765 -11.13334 -11.03013 -10.77059 -10.20843 -9.13632 -4.96353 -0.90211 0.78800 1.11103 1.13155 1.45583 1.46050 1.68849 1.70289 1.76929 1.90472 2.09679 3.09147 3.19129 3.37112 3.41114 3.50325 3.66607 3.72919 3.74806 3.79582 3.82600 3.87922 3.93235 4.04561 4.10026 4.22143 4.36321 4.38870 4.42672 4.47023 4.55114 4.60268 4.60385 4.66488 4.72134 4.74277 4.75437 4.79307 4.81727 4.86534 4.88042 4.93218 4.98774 5.01956 5.05264 5.09033 5.15578 5.26114 5.30159 5.35870 5.38368 5.47372 5.60001 5.87079 6.31307 6.35967 6.67833 7.31214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.132 3.868 10 H 0.097 0.903 11 C -0.145 4.145 12 C -0.103 4.103 13 H 0.108 0.892 14 C 0.072 3.928 15 O -0.351 6.351 16 C 0.504 3.496 17 O -0.544 6.544 18 C -0.215 4.215 19 C 0.050 3.950 20 C -0.032 4.032 21 C -0.141 4.141 22 C -0.191 4.191 23 C -0.028 4.028 24 C -0.038 4.038 25 O -0.533 6.533 26 Si 0.766 3.234 27 O -0.165 6.165 28 C -0.121 4.121 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.152 0.848 44 H 0.173 0.827 45 H 0.182 0.818 46 H 0.169 0.831 47 H 0.158 0.842 48 H 0.391 0.609 49 H -0.291 1.291 50 H -0.282 1.282 51 H 0.115 0.885 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 0.618 0.450 2.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.027 3.973 10 H 0.115 0.885 11 C -0.184 4.184 12 C -0.122 4.122 13 H 0.127 0.873 14 C -0.002 4.002 15 O -0.268 6.268 16 C 0.354 3.646 17 O -0.438 6.438 18 C -0.234 4.234 19 C 0.032 3.968 20 C -0.081 4.081 21 C -0.159 4.159 22 C -0.210 4.210 23 C -0.079 4.079 24 C -0.147 4.147 25 O -0.341 6.341 26 Si 0.669 3.331 27 O -0.063 6.063 28 C -0.159 4.159 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.169 0.831 44 H 0.190 0.810 45 H 0.200 0.800 46 H 0.187 0.813 47 H 0.176 0.824 48 H 0.241 0.759 49 H -0.218 1.218 50 H -0.209 1.209 51 H 0.133 0.867 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.716 0.970 -0.370 2.006 hybrid contribution 0.349 0.007 1.518 1.558 sum 2.065 0.978 1.148 2.557 Atomic orbital electron populations 1.22474 0.93985 1.03716 1.03547 1.22364 0.94507 0.92576 0.81481 1.21893 1.02450 0.90856 1.04269 1.22473 1.01630 1.02255 0.97365 1.86310 1.71510 1.23223 1.47326 1.18306 0.78548 0.80729 0.82433 1.90906 1.42259 1.71043 1.44114 1.44368 1.54969 1.11811 1.23142 1.21818 0.98601 0.78155 0.98678 0.88481 1.23564 0.98302 1.00257 0.96263 1.22668 0.97765 0.96153 0.95589 0.87341 1.22869 0.77316 0.98334 1.01724 1.86219 1.27786 1.41079 1.71692 1.19984 0.90172 0.79008 0.75461 1.90909 1.62522 1.48278 1.42043 1.21317 0.92331 1.01426 1.08325 1.20870 0.89175 0.95336 0.91432 1.19852 0.89895 0.93925 1.04401 1.22849 0.93672 0.98564 1.00859 1.21852 0.97940 0.98348 1.02836 1.23394 0.86020 0.95150 1.03381 1.24554 0.83877 1.12614 0.93645 1.86654 1.42712 1.68198 1.36572 0.93595 0.81430 0.73134 0.84904 1.83983 1.16355 1.45061 1.60870 1.23332 0.94874 1.02793 0.94855 0.91905 0.89444 0.91770 0.91200 0.88286 0.91162 0.91787 0.89443 0.91962 0.74606 0.91475 0.88145 0.91008 0.90951 0.83076 0.81028 0.80035 0.81329 0.82425 0.75894 1.21761 1.20871 0.86683 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.37 71.98 0.60 0.02 16 2 C 0.13 0.39 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -2.05 9.94 -55.42 -0.55 -2.60 16 6 C 0.65 4.36 8.06 129.79 1.05 5.40 16 7 O -0.59 -7.19 11.48 19.81 0.23 -6.96 16 8 N -0.68 -0.23 5.27 -567.61 -2.99 -3.22 16 9 C 0.13 -0.17 4.32 45.52 0.20 0.02 16 10 H 0.10 0.19 7.46 -2.39 -0.02 0.18 16 11 C -0.15 0.26 7.43 31.12 0.23 0.49 16 12 C -0.10 0.41 3.89 -10.27 -0.04 0.37 16 13 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 14 C 0.07 -0.02 5.21 71.98 0.38 0.36 16 15 O -0.35 -1.21 10.10 -59.20 -0.60 -1.80 16 16 C 0.50 2.53 7.68 68.57 0.53 3.06 16 17 O -0.54 -5.29 15.88 19.13 0.30 -4.99 16 18 C -0.22 -0.25 9.55 22.44 0.21 -0.03 16 19 C 0.05 -0.03 9.39 22.50 0.21 0.18 16 20 C -0.03 0.01 6.84 23.02 0.16 0.17 16 21 C -0.14 0.34 10.90 22.71 0.25 0.59 16 22 C -0.19 0.36 10.74 22.06 0.24 0.59 16 23 C -0.03 0.04 6.22 24.98 0.16 0.19 16 24 C -0.04 0.14 2.98 71.23 0.21 0.35 16 25 O -0.53 0.65 12.87 -148.98 -1.92 -1.27 16 26 Si 0.77 -2.17 32.09 68.60 2.20 0.03 16 27 O -0.17 -0.08 8.55 -6.06 -0.05 -0.13 16 28 C -0.12 0.73 7.39 31.12 0.23 0.96 16 29 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 36 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.42 -1.69 8.81 -92.71 -0.82 -2.51 16 39 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.10 -0.25 7.90 -2.39 -0.02 -0.27 16 41 H 0.07 0.00 7.83 -2.38 -0.02 -0.02 16 42 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 43 H 0.15 -0.13 7.72 -2.91 -0.02 -0.15 16 44 H 0.17 -0.44 7.46 -2.91 -0.02 -0.46 16 45 H 0.18 -1.31 8.06 -2.91 -0.02 -1.33 16 46 H 0.17 -0.73 8.06 -2.91 -0.02 -0.76 16 47 H 0.16 -1.16 7.96 -2.39 -0.02 -1.18 16 48 H 0.39 -2.45 8.70 -74.06 -0.64 -3.09 16 49 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 50 H -0.28 -0.85 7.11 99.48 0.71 -0.14 16 51 H 0.11 -0.90 8.10 -2.39 -0.02 -0.92 16 52 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: 0.00 -20.70 437.08 1.98 -18.71 By element: Atomic # 1 Polarization: -11.30 SS G_CDS: -0.47 Total: -11.78 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.83 Total: 14.00 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -2.99 Total: -3.22 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -2.59 Total: -17.75 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.20 Total: 0.03 kcal Total: -20.70 1.98 -18.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_15734084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.082 kcal (2) G-P(sol) polarization free energy of solvation -20.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds