Wall clock time and date at job start Sat Mar 6 2021 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.46899 * 2 1 4 4 C 1.53000 * 109.47020 * 240.00286 * 2 1 3 5 5 O 1.45203 * 109.47367 * 120.00188 * 2 1 3 6 6 C 1.34639 * 116.99978 * 59.99515 * 5 2 1 7 7 O 1.21516 * 119.99723 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00234 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00390 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84386 * 336.19756 * 9 8 6 11 11 C 1.53947 * 113.74472 * 107.40269 * 9 8 6 12 12 C 1.53776 * 87.02092 * 139.94715 * 11 9 8 13 13 H 1.08997 * 113.61839 * 89.22876 * 12 11 9 14 14 C 1.53001 * 113.61223 * 220.04917 * 12 11 9 15 15 O 1.42900 * 109.47403 * 274.13285 * 14 12 11 16 16 C 1.34998 * 117.00158 * 179.97438 * 15 14 12 17 17 O 1.21707 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.41292 * 119.99593 * 180.02562 * 16 15 14 19 19 C 1.35755 * 119.99726 * 180.02562 * 18 16 15 20 20 C 1.41527 * 120.00410 * 180.02562 * 19 18 16 21 21 C 1.38002 * 126.11256 * 180.02562 * 20 19 18 22 22 C 1.40275 * 106.52542 * 180.29626 * 21 20 19 23 23 C 1.35186 * 107.21303 * 359.57068 * 22 21 20 24 24 C 1.50697 * 125.47985 * 180.15456 * 23 22 21 25 25 O 1.42899 * 109.47028 * 65.30291 * 24 23 22 26 26 Si 1.86306 * 109.46848 * 185.29702 * 24 23 22 27 27 O 1.34008 * 109.03846 * 0.43687 * 23 22 21 28 28 C 1.53775 * 113.61619 * 205.00279 * 9 8 6 29 29 H 1.08998 * 109.47507 * 299.99880 * 1 2 3 30 30 H 1.09002 * 109.47402 * 59.99811 * 1 2 3 31 31 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46895 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47626 * 299.99533 * 3 2 1 34 34 H 1.08999 * 109.47496 * 60.00294 * 3 2 1 35 35 H 1.09004 * 109.46907 * 299.99835 * 4 2 1 36 36 H 1.08997 * 109.47565 * 59.99681 * 4 2 1 37 37 H 1.09001 * 109.47190 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99975 * 0.02562 * 8 6 5 39 39 H 1.09002 * 113.61652 * 25.42155 * 11 9 8 40 40 H 1.09009 * 113.66987 * 254.47528 * 11 9 8 41 41 H 1.09005 * 109.46952 * 154.13495 * 14 12 11 42 42 H 1.09005 * 109.47477 * 34.13612 * 14 12 11 43 43 H 1.08003 * 120.00610 * 0.02562 * 18 16 15 44 44 H 1.08000 * 120.00180 * 359.97438 * 19 18 16 45 45 H 1.08002 * 126.73326 * 0.02697 * 21 20 19 46 46 H 1.07999 * 126.39884 * 179.73459 * 22 21 20 47 47 H 1.08998 * 109.47197 * 305.29754 * 24 23 22 48 48 H 0.96696 * 114.00083 * 179.97438 * 25 24 23 49 49 H 1.48504 * 109.99877 * 178.68403 * 26 24 23 50 50 H 1.48494 * 110.00140 * 300.00466 * 26 24 23 51 51 H 1.09000 * 113.61878 * 105.38170 * 28 9 8 52 52 H 1.09000 * 113.69217 * 334.49347 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4171 9 6 1.6739 -4.0669 2.5831 10 1 0.7599 -4.3167 2.0442 11 6 2.8212 -5.0652 2.3436 12 6 2.2716 -5.8605 3.5395 13 1 1.5210 -6.6011 3.2635 14 6 3.3616 -6.4298 4.4498 15 8 3.7959 -7.6925 3.9407 16 6 4.7622 -8.3327 4.6327 17 8 5.2223 -7.8311 5.6416 18 6 5.2393 -9.5853 4.1856 19 6 6.2106 -10.2294 4.8817 20 6 6.6890 -11.4837 4.4337 21 6 7.6671 -12.2451 5.0404 22 6 7.8220 -13.3961 4.2537 23 6 6.9472 -13.3001 3.2276 24 6 6.7668 -14.3207 2.1336 25 8 6.2589 -15.5337 2.6929 26 14 5.5643 -13.6690 0.8686 27 8 6.2705 -12.1486 3.3363 28 6 1.6740 -4.5375 4.0471 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 2.6262 -2.2365 3.0836 39 1 3.8109 -4.6429 2.5177 40 1 2.7477 -5.5969 1.3948 41 1 2.9627 -6.5614 5.4557 42 1 4.2056 -5.7408 4.4809 43 1 4.8313 -10.0303 3.2901 44 1 6.6189 -9.7842 5.7770 45 1 8.2100 -12.0004 5.9414 46 1 8.5098 -14.2087 4.4354 47 1 7.7270 -14.5149 1.6559 48 1 6.1176 -16.2369 2.0443 49 1 5.4019 -14.6529 -0.2319 50 1 4.2510 -13.4002 1.5074 51 1 0.6758 -4.6437 4.4717 52 1 2.3489 -3.9714 4.6890 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_15734238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:11:28 Heat of formation + Delta-G solvation = -131.515500 kcal Electronic energy + Delta-G solvation = -33440.787908 eV Core-core repulsion = 28568.862391 eV Total energy + Delta-G solvation = -4871.925517 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.78527 -41.96221 -41.67280 -40.28541 -38.20983 -38.08601 -37.56890 -35.45852 -35.41192 -34.25048 -34.19433 -31.44725 -29.77267 -28.38045 -28.31368 -27.58499 -26.76151 -25.09204 -24.17460 -23.06333 -22.46429 -21.91682 -21.42663 -20.79779 -20.38752 -19.20812 -19.05436 -18.83871 -18.05190 -17.76487 -17.59643 -17.43294 -17.19003 -17.13078 -16.51807 -16.31454 -16.10032 -15.83322 -15.59244 -15.40550 -14.80288 -14.77390 -14.47994 -14.43540 -14.10362 -14.08374 -13.70097 -13.68518 -13.52302 -13.44286 -13.37430 -13.14332 -12.98541 -12.89347 -12.87941 -12.83420 -12.54431 -12.45935 -12.26523 -12.17231 -11.98945 -11.86260 -11.80746 -11.58830 -11.40706 -11.25427 -11.11550 -10.98830 -10.65207 -10.16919 -9.13460 -4.97677 -0.90743 0.77235 1.12012 1.15273 1.37240 1.46533 1.68682 1.71200 1.77062 1.92285 2.09260 3.12926 3.29355 3.37382 3.43874 3.56634 3.65210 3.72661 3.73295 3.79022 3.80984 3.86477 3.93325 4.02022 4.08940 4.19099 4.25899 4.27648 4.41621 4.50119 4.55996 4.60033 4.61863 4.66330 4.69172 4.75154 4.75879 4.78142 4.80056 4.84995 4.86397 4.94075 4.95611 5.01499 5.05784 5.09320 5.17947 5.25885 5.30419 5.36607 5.37004 5.49392 5.58353 5.89406 6.38635 6.48620 6.67209 7.32509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.690 5.690 9 C 0.136 3.864 10 H 0.108 0.892 11 C -0.145 4.145 12 C -0.101 4.101 13 H 0.110 0.890 14 C 0.075 3.925 15 O -0.352 6.352 16 C 0.505 3.495 17 O -0.542 6.542 18 C -0.218 4.218 19 C 0.053 3.947 20 C -0.035 4.035 21 C -0.138 4.138 22 C -0.189 4.189 23 C 0.007 3.993 24 C -0.042 4.042 25 O -0.553 6.553 26 Si 0.757 3.243 27 O -0.170 6.170 28 C -0.121 4.121 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.148 0.852 44 H 0.176 0.824 45 H 0.186 0.814 46 H 0.173 0.827 47 H 0.134 0.866 48 H 0.407 0.593 49 H -0.262 1.262 50 H -0.309 1.309 51 H 0.095 0.905 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -0.300 -1.059 4.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.349 5.349 9 C 0.032 3.968 10 H 0.126 0.874 11 C -0.184 4.184 12 C -0.120 4.120 13 H 0.128 0.872 14 C 0.001 3.999 15 O -0.268 6.268 16 C 0.355 3.645 17 O -0.436 6.436 18 C -0.237 4.237 19 C 0.034 3.966 20 C -0.084 4.084 21 C -0.157 4.157 22 C -0.208 4.208 23 C -0.044 4.044 24 C -0.151 4.151 25 O -0.366 6.366 26 Si 0.661 3.339 27 O -0.068 6.068 28 C -0.159 4.159 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.166 0.834 44 H 0.193 0.807 45 H 0.204 0.796 46 H 0.190 0.810 47 H 0.151 0.849 48 H 0.259 0.741 49 H -0.187 1.187 50 H -0.237 1.237 51 H 0.114 0.886 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.954 0.027 -1.334 3.242 hybrid contribution -0.008 -1.086 0.561 1.223 sum 2.946 -1.059 -0.773 3.225 Atomic orbital electron populations 1.22472 0.94021 1.03693 1.03526 1.22352 0.94483 0.92590 0.81526 1.21891 1.02447 0.90877 1.04257 1.22472 1.01612 1.02250 0.97380 1.86315 1.71533 1.23343 1.47271 1.18430 0.78563 0.80704 0.82636 1.90902 1.42366 1.71053 1.44219 1.44766 1.54850 1.12250 1.23017 1.22573 0.98838 0.77095 0.98255 0.87419 1.23633 0.99096 0.96695 0.98998 1.22332 0.97271 0.96499 0.95908 0.87158 1.22814 0.97426 0.81689 0.98001 1.86220 1.51800 1.35087 1.53736 1.19923 0.77204 0.86164 0.81160 1.90901 1.58005 1.68492 1.26204 1.21300 1.02699 0.94641 1.05047 1.20889 0.91001 0.87579 0.97091 1.19890 1.02316 0.96477 0.89668 1.22868 0.97518 0.93575 1.01706 1.21869 1.02871 1.00796 0.95300 1.22075 0.94876 0.87072 1.00383 1.24035 1.08538 0.84990 0.97548 1.86512 1.87250 1.23206 1.39591 0.93750 0.77123 0.86641 0.76370 1.83974 1.53413 1.28820 1.40556 1.23346 1.03439 0.94113 0.94973 0.91922 0.89459 0.91794 0.91203 0.88303 0.91167 0.91811 0.89448 0.91982 0.74542 0.88956 0.91123 0.90858 0.90891 0.83432 0.80703 0.79638 0.80981 0.84863 0.74053 1.18745 1.23726 0.88645 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 2 C 0.13 0.43 1.13 -10.80 -0.01 0.42 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.68 8.37 71.98 0.60 -0.08 16 5 O -0.37 -2.21 9.94 -55.48 -0.55 -2.76 16 6 C 0.64 4.60 8.06 129.79 1.05 5.65 16 7 O -0.59 -7.46 11.48 19.79 0.23 -7.23 16 8 N -0.69 -0.43 5.37 -567.34 -3.04 -3.47 16 9 C 0.14 -0.13 4.24 45.57 0.19 0.07 16 10 H 0.11 0.26 7.46 -2.38 -0.02 0.24 16 11 C -0.15 0.18 7.45 31.18 0.23 0.41 16 12 C -0.10 0.29 4.00 -10.27 -0.04 0.25 16 13 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 14 C 0.07 0.03 5.20 71.98 0.37 0.41 16 15 O -0.35 -1.62 10.10 -59.17 -0.60 -2.22 16 16 C 0.51 3.11 7.68 68.57 0.53 3.64 16 17 O -0.54 -5.63 15.88 19.16 0.30 -5.32 16 18 C -0.22 -0.63 9.55 22.45 0.21 -0.42 16 19 C 0.05 0.05 9.39 22.50 0.21 0.26 16 20 C -0.04 -0.07 6.84 23.02 0.16 0.09 16 21 C -0.14 0.11 10.90 22.71 0.25 0.36 16 22 C -0.19 -0.01 10.76 22.06 0.24 0.23 16 23 C 0.01 0.01 6.24 24.98 0.16 0.17 16 24 C -0.04 0.13 2.97 71.23 0.21 0.34 16 25 O -0.55 0.47 12.86 -148.98 -1.92 -1.45 16 26 Si 0.76 -1.57 32.10 68.60 2.20 0.63 16 27 O -0.17 -0.64 8.56 -6.18 -0.05 -0.69 16 28 C -0.12 0.67 7.39 31.12 0.23 0.90 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 32 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 33 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 36 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.06 0.19 8.14 -2.39 -0.02 0.18 16 38 H 0.42 -1.69 8.84 -92.71 -0.82 -2.51 16 39 H 0.09 -0.17 7.92 -2.39 -0.02 -0.19 16 40 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.07 0.02 8.13 -2.38 -0.02 0.00 16 42 H 0.07 0.01 7.86 -2.38 -0.02 -0.01 16 43 H 0.15 0.23 7.72 -2.91 -0.02 0.21 16 44 H 0.18 -0.29 7.46 -2.91 -0.02 -0.31 16 45 H 0.19 -1.19 8.06 -2.91 -0.02 -1.21 16 46 H 0.17 -0.61 8.06 -2.91 -0.02 -0.63 16 47 H 0.13 -1.28 7.96 -2.39 -0.02 -1.30 16 48 H 0.41 -3.99 8.74 -74.06 -0.65 -4.63 16 49 H -0.26 0.08 7.11 99.48 0.71 0.78 16 50 H -0.31 -2.48 7.11 99.48 0.71 -1.77 16 51 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 52 H 0.11 -0.87 8.08 -2.39 -0.02 -0.89 16 Total: 0.00 -23.42 437.35 1.92 -21.50 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.48 Total: -12.51 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.83 Total: 13.51 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -3.04 Total: -3.47 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -2.59 Total: -19.66 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.20 Total: 0.63 kcal Total: -23.42 1.92 -21.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_15734238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.013 kcal (2) G-P(sol) polarization free energy of solvation -23.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds