Wall clock time and date at job start Sat Mar 6 2021 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.47211 * 2 1 4 4 C 1.50697 * 109.46999 * 119.99994 * 2 1 3 5 5 C 1.35186 * 125.47922 * 64.99710 * 4 2 1 6 6 C 1.40283 * 107.21046 * 179.97438 * 5 4 2 7 7 C 1.38007 * 106.52441 * 0.02562 * 6 5 4 8 8 C 1.41533 * 126.10480 * 179.97438 * 7 6 5 9 9 C 1.35755 * 119.99797 * 180.02562 * 8 7 6 10 10 C 1.41288 * 119.99936 * 179.72294 * 9 8 7 11 11 O 1.21713 * 120.00297 * 0.02562 * 10 9 8 12 12 O 1.34994 * 119.99946 * 179.97438 * 10 9 8 13 13 C 1.42905 * 117.00097 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47105 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47201 * 304.99637 * 14 13 12 16 16 C 1.52995 * 109.47445 * 64.99751 * 14 13 12 17 17 C 1.53003 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46895 * 299.99776 * 17 16 14 19 19 H 1.08999 * 109.47476 * 299.99908 * 18 17 16 20 20 O 1.42902 * 109.46984 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47070 * 60.00214 * 18 17 16 22 22 C 1.52992 * 109.47285 * 300.00154 * 21 18 17 23 23 O 1.34007 * 125.48196 * 245.28396 * 4 2 1 24 24 H 0.96700 * 113.99893 * 300.00116 * 1 2 3 25 25 H 1.09001 * 109.46571 * 239.99833 * 2 1 3 26 26 H 1.48503 * 109.99984 * 300.00048 * 3 2 1 27 27 H 1.48497 * 110.00070 * 61.31990 * 3 2 1 28 28 H 1.07996 * 126.39176 * 359.97438 * 5 4 2 29 29 H 1.07999 * 126.73634 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.99836 * 359.72500 * 8 7 6 31 31 H 1.08000 * 119.99581 * 359.72186 * 9 8 7 32 32 H 1.08997 * 109.46716 * 299.99888 * 13 12 10 33 33 H 1.08994 * 109.46885 * 59.99712 * 13 12 10 34 34 H 1.08996 * 109.47190 * 300.00182 * 16 14 13 35 35 H 1.08999 * 109.47221 * 60.00261 * 16 14 13 36 36 H 1.09005 * 109.47102 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47633 * 60.00245 * 17 16 14 38 38 H 0.96706 * 113.99769 * 59.99816 * 20 18 17 39 39 H 1.08996 * 109.47190 * 179.97438 * 21 18 17 40 40 H 1.09001 * 109.47014 * 60.00028 * 21 18 17 41 41 H 1.09001 * 109.46991 * 299.99887 * 22 21 18 42 42 H 1.08996 * 109.47455 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7542 -2.0218 1.5066 6 6 2.3739 -2.2738 2.7396 7 6 2.9094 -1.0741 3.1622 8 6 3.6279 -0.8582 4.3623 9 6 4.1013 0.3796 4.6566 10 6 4.8135 0.5965 5.8574 11 8 5.0030 -0.3265 6.6278 12 8 5.2847 1.8273 6.1498 13 6 5.9962 1.9742 7.3804 14 6 6.4487 3.4272 7.5376 15 1 7.0275 3.7241 6.6629 16 6 5.2221 4.3321 7.6687 17 6 5.6747 5.7852 7.8252 18 6 6.5421 5.9170 9.0788 19 1 5.9636 5.6204 9.9537 20 8 6.9643 7.2743 9.2254 21 6 7.7687 5.0120 8.9477 22 6 7.3161 3.5590 8.7910 23 8 2.6208 -0.1426 2.2295 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 -0.8900 26 1 1.5615 2.4678 -1.2085 27 1 1.5880 2.4585 1.2242 28 1 1.2328 -2.7412 0.8925 29 1 2.4225 -3.2208 3.2566 30 1 3.7953 -1.6771 5.0462 31 1 3.9335 1.1985 3.9727 32 1 5.3441 1.7052 8.2113 33 1 6.8680 1.3201 7.3763 34 1 4.6044 4.2385 6.7755 35 1 4.6434 4.0352 8.5434 36 1 4.8008 6.4299 7.9191 37 1 6.2531 6.0819 6.9504 38 1 6.2368 7.9051 9.3141 39 1 8.3868 5.1062 9.8405 40 1 8.3472 5.3087 8.0728 41 1 6.7377 3.2623 9.6659 42 1 8.1900 2.9143 8.6981 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_16737258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:33:41 Heat of formation + Delta-G solvation = -142.429549 kcal Electronic energy + Delta-G solvation = -24656.859182 eV Core-core repulsion = 20763.407497 eV Total energy + Delta-G solvation = -3893.451686 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.79597 -41.75419 -40.08847 -38.25037 -38.03159 -36.57893 -35.45030 -34.19449 -32.07428 -31.83341 -31.11365 -28.08789 -26.46107 -24.46763 -23.77632 -23.11067 -22.33972 -21.91376 -20.96865 -20.56442 -19.24494 -18.63021 -18.20682 -17.70464 -17.61540 -17.55268 -17.24617 -16.49332 -16.15597 -15.83724 -15.55835 -15.42437 -15.03108 -14.48515 -14.44844 -14.15929 -14.07629 -13.94910 -13.72734 -13.64792 -13.36398 -13.21914 -13.08813 -12.93368 -12.56723 -12.17689 -12.15049 -11.96774 -11.88350 -11.72407 -11.62829 -11.48543 -11.10281 -11.01131 -10.78458 -10.71977 -9.15048 -4.96542 -0.91490 0.78375 1.12678 1.44424 1.46002 1.69178 1.74249 1.90508 2.08237 3.19653 3.20962 3.43557 3.60815 3.63349 3.72829 3.79015 3.84065 4.00107 4.04827 4.07341 4.16295 4.26046 4.34495 4.35104 4.38870 4.46878 4.48985 4.52457 4.57706 4.66715 4.78916 4.80272 4.93788 4.96087 5.03953 5.06458 5.07897 5.14261 5.16803 5.30437 5.34641 5.35410 5.45355 5.86791 6.30774 6.65470 6.85263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.038 4.038 3 Si 0.765 3.235 4 C -0.027 4.027 5 C -0.190 4.190 6 C -0.140 4.140 7 C -0.032 4.032 8 C 0.051 3.949 9 C -0.215 4.215 10 C 0.504 3.496 11 O -0.544 6.544 12 O -0.350 6.350 13 C 0.068 3.932 14 C -0.082 4.082 15 H 0.083 0.917 16 C -0.110 4.110 17 C -0.146 4.146 18 C 0.100 3.900 19 H 0.061 0.939 20 O -0.590 6.590 21 C -0.112 4.112 22 C -0.105 4.105 23 O -0.167 6.167 24 H 0.391 0.609 25 H 0.159 0.841 26 H -0.282 1.282 27 H -0.292 1.292 28 H 0.170 0.830 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -0.817 -1.701 2.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.147 4.147 3 Si 0.669 3.331 4 C -0.079 4.079 5 C -0.209 4.209 6 C -0.159 4.159 7 C -0.081 4.081 8 C 0.033 3.967 9 C -0.234 4.234 10 C 0.354 3.646 11 O -0.438 6.438 12 O -0.266 6.266 13 C -0.006 4.006 14 C -0.101 4.101 15 H 0.101 0.899 16 C -0.148 4.148 17 C -0.184 4.184 18 C 0.042 3.958 19 H 0.079 0.921 20 O -0.398 6.398 21 C -0.150 4.150 22 C -0.143 4.143 23 O -0.064 6.064 24 H 0.241 0.759 25 H 0.177 0.823 26 H -0.208 1.208 27 H -0.218 1.218 28 H 0.188 0.812 29 H 0.200 0.800 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.063 -0.484 -2.021 2.079 hybrid contribution -1.629 -0.053 0.783 1.808 sum -1.692 -0.537 -1.238 2.164 Atomic orbital electron populations 1.86655 1.17072 1.80397 1.50078 1.24581 0.83672 1.12265 0.94178 0.93601 0.90460 0.71823 0.77204 1.23398 0.98777 0.94026 0.91699 1.21872 1.04515 0.95922 0.98585 1.22857 0.97884 0.98767 0.96389 1.19842 1.07323 0.88228 0.92677 1.20875 0.87697 0.97815 0.90324 1.21296 1.04885 0.99965 0.97250 1.19998 0.77137 0.80511 0.86971 1.90908 1.57372 1.43895 1.51611 1.86199 1.66358 1.32310 1.41763 1.22851 0.95847 0.98310 0.83578 1.21222 0.97381 0.91640 0.99833 0.89902 1.21505 0.96882 0.93756 1.02620 1.22212 1.00093 0.97267 0.98779 1.21914 0.95335 0.81931 0.96655 0.92095 1.86481 1.39165 1.17908 1.96292 1.21448 0.96989 0.93721 1.02808 1.21438 0.99921 0.95944 0.96973 1.83991 1.57553 1.38200 1.26668 0.75929 0.82323 1.20835 1.21800 0.81224 0.80006 0.81015 0.83106 0.91346 0.91183 0.91285 0.91343 0.90637 0.91722 0.75726 0.91160 0.91713 0.90613 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.61 12.88 -148.98 -1.92 -1.31 16 2 C -0.04 0.14 2.98 71.23 0.21 0.35 16 3 Si 0.77 -2.23 32.10 68.60 2.20 -0.03 16 4 C -0.03 0.04 6.20 24.98 0.15 0.19 16 5 C -0.19 0.38 10.76 22.06 0.24 0.62 16 6 C -0.14 0.35 10.90 22.71 0.25 0.59 16 7 C -0.03 0.01 6.84 23.03 0.16 0.17 16 8 C 0.05 -0.02 9.39 22.51 0.21 0.19 16 9 C -0.22 -0.32 9.55 22.44 0.21 -0.10 16 10 C 0.50 2.84 7.68 68.57 0.53 3.36 16 11 O -0.54 -5.69 15.88 19.14 0.30 -5.39 16 12 O -0.35 -1.52 9.64 -59.13 -0.57 -2.09 16 13 C 0.07 0.11 4.76 71.98 0.34 0.45 16 14 C -0.08 0.09 2.43 -10.80 -0.03 0.07 16 15 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C -0.11 0.15 5.10 30.59 0.16 0.31 16 17 C -0.15 0.23 5.55 30.60 0.17 0.40 16 18 C 0.10 -0.02 3.47 30.59 0.11 0.09 16 19 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 20 O -0.59 -1.41 13.32 -148.98 -1.98 -3.39 16 21 C -0.11 0.01 5.57 30.59 0.17 0.18 16 22 C -0.11 0.26 5.20 30.59 0.16 0.42 16 23 O -0.17 -0.10 8.56 -6.07 -0.05 -0.15 16 24 H 0.39 -2.38 8.70 -74.06 -0.64 -3.03 16 25 H 0.16 -1.21 7.96 -2.39 -0.02 -1.23 16 26 H -0.28 -0.81 7.11 99.48 0.71 -0.11 16 27 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 28 H 0.17 -0.80 8.06 -2.91 -0.02 -0.82 16 29 H 0.18 -1.32 8.06 -2.91 -0.02 -1.35 16 30 H 0.17 -0.41 7.46 -2.91 -0.02 -0.43 16 31 H 0.15 -0.08 7.72 -2.91 -0.02 -0.10 16 32 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 33 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.07 0.00 7.82 -2.39 -0.02 -0.02 16 35 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.07 -0.26 8.14 -2.38 -0.02 -0.27 16 37 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.39 -2.14 9.08 -74.05 -0.67 -2.82 16 39 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -16.83 357.36 0.77 -16.06 By element: Atomic # 1 Polarization: -10.76 SS G_CDS: -0.25 Total: -11.00 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 3.04 Total: 7.29 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -4.22 Total: -12.32 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: 2.20 Total: -0.03 kcal Total: -16.83 0.77 -16.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_16737258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.374 kcal (2) G-P(sol) polarization free energy of solvation -16.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds