Wall clock time and date at job start Sat Mar 6 2021 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99737 * 2 1 4 4 C 1.52998 * 112.85322 * 65.33972 * 3 2 1 5 5 F 1.39900 * 109.47155 * 283.35229 * 4 3 2 6 6 F 1.39894 * 109.47695 * 163.34557 * 4 3 2 7 7 F 1.39909 * 109.46943 * 43.34760 * 4 3 2 8 8 C 1.53781 * 113.61531 * 294.14166 * 3 2 1 9 9 C 1.53782 * 87.08379 * 270.79960 * 8 3 2 10 10 H 1.09000 * 113.61557 * 219.93880 * 9 8 3 11 11 C 1.53001 * 113.61340 * 89.11271 * 9 8 3 12 12 O 1.42898 * 109.46987 * 175.00182 * 11 9 8 13 13 C 1.34997 * 116.99986 * 180.02562 * 12 11 9 14 14 O 1.21709 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.41291 * 120.00057 * 179.97438 * 13 12 11 16 16 C 1.35752 * 120.00012 * 179.97438 * 15 13 12 17 17 C 1.41530 * 120.00304 * 180.02562 * 16 15 13 18 18 C 1.38007 * 126.11127 * 179.71536 * 17 16 15 19 19 C 1.40278 * 106.52204 * 179.88803 * 18 17 16 20 20 C 1.35170 * 107.21334 * 0.37664 * 19 18 17 21 21 C 1.50708 * 125.47889 * 179.76439 * 20 19 18 22 22 O 1.42895 * 109.46989 * 64.97695 * 21 20 19 23 23 Si 1.86299 * 109.47157 * 184.97706 * 21 20 19 24 24 O 1.34001 * 109.04470 * 359.76512 * 20 19 18 25 25 C 1.53780 * 87.07889 * 334.56861 * 9 8 3 26 26 H 1.08994 * 109.47465 * 64.52993 * 1 2 3 27 27 H 1.09007 * 109.46740 * 184.53062 * 1 2 3 28 28 H 1.09003 * 109.47125 * 304.52367 * 1 2 3 29 29 H 1.08997 * 113.61534 * 25.34937 * 8 3 2 30 30 H 1.09005 * 113.61410 * 156.17152 * 8 3 2 31 31 H 1.08997 * 109.46946 * 295.00253 * 11 9 8 32 32 H 1.09000 * 109.46768 * 55.00781 * 11 9 8 33 33 H 1.07999 * 120.00340 * 0.02562 * 15 13 12 34 34 H 1.08001 * 120.00284 * 0.02562 * 16 15 13 35 35 H 1.07999 * 126.73359 * 0.02562 * 18 17 16 36 36 H 1.08005 * 126.38628 * 180.11003 * 19 18 17 37 37 H 1.09001 * 109.46820 * 304.97476 * 21 20 19 38 38 H 0.96698 * 114.00468 * 59.99723 * 22 21 20 39 39 H 1.48499 * 110.00259 * 180.02562 * 23 21 20 40 40 H 1.48507 * 109.99783 * 301.31802 * 23 21 20 41 41 H 1.09007 * 113.61685 * 270.87926 * 25 9 8 42 42 H 1.09002 * 113.61565 * 139.98623 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7144 2.0875 1.2813 5 9 0.3995 2.5639 1.2439 6 9 2.5986 3.1667 1.3837 7 9 1.8745 1.2469 2.3882 8 6 1.7342 2.1026 -1.2858 9 6 3.0173 1.4756 -1.8563 10 1 3.6189 2.1697 -2.4431 11 6 2.7832 0.1424 -2.5694 12 8 4.0052 -0.3015 -3.1625 13 6 3.9703 -1.4713 -3.8355 14 8 2.9291 -2.0962 -3.9160 15 6 5.1424 -1.9695 -4.4473 16 6 5.1075 -3.1461 -5.1235 17 6 6.2817 -3.6455 -5.7359 18 6 6.3905 -4.8238 -6.4460 19 6 7.7250 -4.9129 -6.8690 20 6 8.3657 -3.8169 -6.4050 21 6 9.8236 -3.4999 -6.6184 22 8 10.0651 -3.2834 -8.0100 23 14 10.2713 -1.9639 -5.6640 24 8 7.4962 -3.0574 -5.7247 25 6 3.4942 1.3211 -0.4025 26 1 -0.3634 0.4419 -0.9277 27 1 -0.3633 -1.0245 0.0812 28 1 -0.3633 0.5824 0.8467 29 1 0.8280 1.7923 -1.8059 30 1 1.7967 3.1826 -1.1519 31 1 2.4385 -0.5994 -1.8490 32 1 2.0291 0.2730 -3.3456 33 1 6.0664 -1.4148 -4.3762 34 1 4.1837 -3.7011 -5.1943 35 1 5.6023 -5.5363 -6.6400 36 1 8.1603 -5.7108 -7.4525 37 1 10.4316 -4.3346 -6.2696 38 1 9.5561 -2.5537 -8.3888 39 1 11.7064 -1.6403 -5.8666 40 1 9.4269 -0.8258 -6.1081 41 1 4.0393 2.1874 -0.0274 42 1 4.0090 0.3799 -0.2095 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_11946942_17321610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:53:31 Heat of formation + Delta-G solvation = -235.738523 kcal Electronic energy + Delta-G solvation = -32445.940707 eV Core-core repulsion = 27140.080914 eV Total energy + Delta-G solvation = -5305.859793 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.17096 -48.71902 -48.59600 -43.83552 -41.90680 -41.05722 -38.29506 -37.95305 -36.94441 -35.41650 -34.23961 -31.47808 -30.61675 -28.43219 -28.02778 -26.99700 -26.86583 -24.54936 -23.31560 -23.15790 -21.97546 -20.87307 -20.50492 -19.76947 -19.46266 -19.27172 -19.14313 -18.60401 -17.67595 -17.56042 -17.49026 -17.29095 -17.16646 -16.54182 -16.21198 -15.92277 -15.87653 -15.63893 -15.51632 -15.38909 -15.10775 -14.88999 -14.77626 -14.67139 -14.47308 -14.28050 -14.19928 -14.09474 -13.97827 -13.61655 -13.45110 -13.36481 -13.24446 -12.99171 -12.78514 -12.40343 -12.11805 -12.10806 -11.87360 -11.77512 -11.57225 -11.53190 -11.06647 -10.85267 -10.83188 -9.17094 -5.05493 -0.89909 0.77888 1.03448 1.40380 1.44379 1.55566 1.64230 1.71867 1.86228 2.00945 2.13598 2.54360 2.62438 2.84067 3.05591 3.19953 3.30774 3.40180 3.46855 3.61015 3.73111 3.78727 3.98471 4.06059 4.12667 4.15616 4.21261 4.23402 4.26869 4.34908 4.41589 4.46966 4.50424 4.58367 4.58656 4.66931 4.70650 4.75665 4.85504 4.92598 5.05696 5.27142 5.46364 5.63123 5.81800 6.13521 6.78357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.332 6.332 3 C 0.038 3.962 4 C 0.437 3.563 5 F -0.181 7.181 6 F -0.175 7.175 7 F -0.174 7.174 8 C -0.143 4.143 9 C -0.100 4.100 10 H 0.107 0.893 11 C 0.077 3.923 12 O -0.347 6.347 13 C 0.504 3.496 14 O -0.511 6.511 15 C -0.199 4.199 16 C 0.034 3.966 17 C -0.013 4.013 18 C -0.147 4.147 19 C -0.180 4.180 20 C -0.027 4.027 21 C -0.038 4.038 22 O -0.519 6.519 23 Si 0.699 3.301 24 O -0.157 6.157 25 C -0.112 4.112 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.381 0.619 39 H -0.247 1.247 40 H -0.254 1.254 41 H 0.118 0.882 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -0.272 -1.253 1.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.249 6.249 3 C -0.005 4.005 4 C 0.382 3.618 5 F -0.163 7.163 6 F -0.156 7.156 7 F -0.155 7.155 8 C -0.181 4.181 9 C -0.118 4.118 10 H 0.125 0.875 11 C 0.003 3.997 12 O -0.264 6.264 13 C 0.352 3.648 14 O -0.402 6.402 15 C -0.218 4.218 16 C 0.016 3.984 17 C -0.062 4.062 18 C -0.166 4.166 19 C -0.200 4.200 20 C -0.078 4.078 21 C -0.148 4.148 22 O -0.326 6.326 23 Si 0.598 3.402 24 O -0.054 6.054 25 C -0.149 4.149 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.176 0.824 37 H 0.158 0.842 38 H 0.230 0.770 39 H -0.171 1.171 40 H -0.178 1.178 41 H 0.136 0.864 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.600 0.027 -1.035 1.906 hybrid contribution -1.056 0.288 -0.803 1.357 sum 0.544 0.315 -1.838 1.942 Atomic orbital electron populations 1.23161 0.79406 1.04517 1.01536 1.88094 1.21225 1.21785 1.93829 1.24049 1.00036 0.86372 0.90004 1.21182 0.74339 0.78783 0.87449 1.93184 1.37131 1.89215 1.96756 1.93178 1.68701 1.57187 1.96533 1.93224 1.95134 1.70858 1.56290 1.23597 0.99619 1.01133 0.93712 1.22115 0.97576 0.96464 0.95629 0.87465 1.22587 0.84349 0.95499 0.97280 1.86158 1.38294 1.38040 1.63866 1.19685 0.89256 0.79113 0.76755 1.90932 1.33215 1.57984 1.58117 1.21306 0.98282 0.98821 1.03380 1.20767 0.94264 0.93834 0.89543 1.19710 0.84605 0.95469 1.06460 1.22521 0.98042 0.96998 0.99067 1.21618 0.93908 0.99885 1.04543 1.23149 0.93469 0.92644 0.98582 1.24443 0.88352 1.13496 0.88484 1.86676 1.68453 1.56492 1.20976 0.94425 0.80844 0.75349 0.89580 1.84000 1.17642 1.44993 1.58736 1.23279 0.90806 1.05820 0.95006 0.92662 0.87939 0.92665 0.88675 0.86883 0.89170 0.90949 0.83750 0.81771 0.82019 0.82388 0.84246 0.77024 1.17111 1.17767 0.86432 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.45 101.05 1.06 1.05 16 2 O -0.33 -0.26 8.36 -35.23 -0.29 -0.55 16 3 C 0.04 -0.01 0.85 -89.81 -0.08 -0.09 16 4 C 0.44 0.49 2.49 37.16 0.09 0.58 16 5 F -0.18 -0.26 15.19 2.25 0.03 -0.22 16 6 F -0.17 -0.18 15.82 2.25 0.04 -0.15 16 7 F -0.17 -0.50 17.09 2.25 0.04 -0.46 16 8 C -0.14 0.31 6.53 -25.92 -0.17 0.14 16 9 C -0.10 0.17 4.20 -89.81 -0.38 -0.21 16 10 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 11 C 0.08 0.02 4.96 37.16 0.18 0.20 16 12 O -0.35 -0.50 10.10 -41.31 -0.42 -0.91 16 13 C 0.50 1.08 7.68 31.89 0.24 1.33 16 14 O -0.51 -2.31 15.88 -19.43 -0.31 -2.62 16 15 C -0.20 -0.04 9.55 -39.31 -0.38 -0.42 16 16 C 0.03 -0.01 9.39 -39.22 -0.37 -0.38 16 17 C -0.01 0.00 6.84 -38.41 -0.26 -0.26 16 18 C -0.15 0.11 10.90 -38.90 -0.42 -0.31 16 19 C -0.18 0.09 10.76 -39.91 -0.43 -0.34 16 20 C -0.03 0.01 6.20 -35.40 -0.22 -0.21 16 21 C -0.04 0.06 2.98 36.01 0.11 0.17 16 22 O -0.52 0.20 12.88 -35.23 -0.45 -0.26 16 23 Si 0.70 -1.21 32.10 -169.99 -5.46 -6.67 16 24 O -0.16 -0.04 8.56 4.70 0.04 0.00 16 25 C -0.11 0.15 6.89 -25.92 -0.18 -0.03 16 26 H 0.05 -0.12 6.85 -51.93 -0.36 -0.48 16 27 H 0.10 -0.19 8.14 -51.92 -0.42 -0.62 16 28 H 0.05 -0.03 6.12 -51.93 -0.32 -0.35 16 29 H 0.09 -0.26 6.77 -51.93 -0.35 -0.61 16 30 H 0.11 -0.36 8.07 -51.93 -0.42 -0.78 16 31 H 0.09 0.12 6.11 -51.93 -0.32 -0.19 16 32 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 33 H 0.14 -0.13 7.72 -52.49 -0.41 -0.54 16 34 H 0.16 -0.22 7.46 -52.49 -0.39 -0.61 16 35 H 0.16 -0.47 8.06 -52.49 -0.42 -0.89 16 36 H 0.16 -0.26 8.06 -52.48 -0.42 -0.68 16 37 H 0.14 -0.44 7.96 -51.93 -0.41 -0.85 16 38 H 0.38 -1.17 8.70 45.56 0.40 -0.78 16 39 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 40 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 41 H 0.12 -0.29 7.00 -51.93 -0.36 -0.65 16 42 H 0.10 -0.08 8.10 -51.93 -0.42 -0.50 16 LS Contribution 372.26 15.07 5.61 5.61 Total: 0.00 -7.23 372.26 -7.04 -14.26 By element: Atomic # 1 Polarization: -4.59 SS G_CDS: -4.67 Total: -9.26 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.19 Total: 1.22 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -1.43 Total: -4.34 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.11 Total: -0.83 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.46 Total: -6.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -7.23 -7.04 -14.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_17321610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.474 kcal (2) G-P(sol) polarization free energy of solvation -7.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds