Wall clock time and date at job start Sat Mar 6 2021 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99737 * 2 1 4 4 C 1.52998 * 112.85322 * 65.33972 * 3 2 1 5 5 F 1.39900 * 109.47155 * 283.35229 * 4 3 2 6 6 F 1.39894 * 109.47695 * 163.34557 * 4 3 2 7 7 F 1.39909 * 109.46943 * 43.34760 * 4 3 2 8 8 C 1.53781 * 113.61531 * 294.14166 * 3 2 1 9 9 C 1.53782 * 87.08379 * 270.79960 * 8 3 2 10 10 H 1.09000 * 113.61557 * 219.93880 * 9 8 3 11 11 C 1.53001 * 113.61340 * 89.11271 * 9 8 3 12 12 O 1.42898 * 109.46987 * 175.00182 * 11 9 8 13 13 C 1.34997 * 116.99986 * 180.02562 * 12 11 9 14 14 O 1.21709 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.41291 * 120.00057 * 179.97438 * 13 12 11 16 16 C 1.35752 * 120.00012 * 179.97438 * 15 13 12 17 17 C 1.41530 * 120.00304 * 180.02562 * 16 15 13 18 18 C 1.38007 * 126.11127 * 179.71536 * 17 16 15 19 19 C 1.40278 * 106.52204 * 179.88803 * 18 17 16 20 20 C 1.35170 * 107.21334 * 0.37664 * 19 18 17 21 21 C 1.50708 * 125.47889 * 179.76439 * 20 19 18 22 22 O 1.42895 * 109.46989 * 64.97695 * 21 20 19 23 23 Si 1.86299 * 109.47157 * 184.97706 * 21 20 19 24 24 O 1.34001 * 109.04470 * 359.76512 * 20 19 18 25 25 C 1.53780 * 87.07889 * 334.56861 * 9 8 3 26 26 H 1.08994 * 109.47465 * 64.52993 * 1 2 3 27 27 H 1.09007 * 109.46740 * 184.53062 * 1 2 3 28 28 H 1.09003 * 109.47125 * 304.52367 * 1 2 3 29 29 H 1.08997 * 113.61534 * 25.34937 * 8 3 2 30 30 H 1.09005 * 113.61410 * 156.17152 * 8 3 2 31 31 H 1.08997 * 109.46946 * 295.00253 * 11 9 8 32 32 H 1.09000 * 109.46768 * 55.00781 * 11 9 8 33 33 H 1.07999 * 120.00340 * 0.02562 * 15 13 12 34 34 H 1.08001 * 120.00284 * 0.02562 * 16 15 13 35 35 H 1.07999 * 126.73359 * 0.02562 * 18 17 16 36 36 H 1.08005 * 126.38628 * 180.11003 * 19 18 17 37 37 H 1.09001 * 109.46820 * 304.97476 * 21 20 19 38 38 H 0.96698 * 114.00468 * 59.99723 * 22 21 20 39 39 H 1.48499 * 110.00259 * 180.02562 * 23 21 20 40 40 H 1.48507 * 109.99783 * 301.31802 * 23 21 20 41 41 H 1.09007 * 113.61685 * 270.87926 * 25 9 8 42 42 H 1.09002 * 113.61565 * 139.98623 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7144 2.0875 1.2813 5 9 0.3995 2.5639 1.2439 6 9 2.5986 3.1667 1.3837 7 9 1.8745 1.2469 2.3882 8 6 1.7342 2.1026 -1.2858 9 6 3.0173 1.4756 -1.8563 10 1 3.6189 2.1697 -2.4431 11 6 2.7832 0.1424 -2.5694 12 8 4.0052 -0.3015 -3.1625 13 6 3.9703 -1.4713 -3.8355 14 8 2.9291 -2.0962 -3.9160 15 6 5.1424 -1.9695 -4.4473 16 6 5.1075 -3.1461 -5.1235 17 6 6.2817 -3.6455 -5.7359 18 6 6.3905 -4.8238 -6.4460 19 6 7.7250 -4.9129 -6.8690 20 6 8.3657 -3.8169 -6.4050 21 6 9.8236 -3.4999 -6.6184 22 8 10.0651 -3.2834 -8.0100 23 14 10.2713 -1.9639 -5.6640 24 8 7.4962 -3.0574 -5.7247 25 6 3.4942 1.3211 -0.4025 26 1 -0.3634 0.4419 -0.9277 27 1 -0.3633 -1.0245 0.0812 28 1 -0.3633 0.5824 0.8467 29 1 0.8280 1.7923 -1.8059 30 1 1.7967 3.1826 -1.1519 31 1 2.4385 -0.5994 -1.8490 32 1 2.0291 0.2730 -3.3456 33 1 6.0664 -1.4148 -4.3762 34 1 4.1837 -3.7011 -5.1943 35 1 5.6023 -5.5363 -6.6400 36 1 8.1603 -5.7108 -7.4525 37 1 10.4316 -4.3346 -6.2696 38 1 9.5561 -2.5537 -8.3888 39 1 11.7064 -1.6403 -5.8666 40 1 9.4269 -0.8258 -6.1081 41 1 4.0393 2.1874 -0.0274 42 1 4.0090 0.3799 -0.2095 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946942_17321610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:53:30 Heat of formation + Delta-G solvation = -230.800422 kcal Electronic energy + Delta-G solvation = -32445.726575 eV Core-core repulsion = 27140.080914 eV Total energy + Delta-G solvation = -5305.645661 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.111 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.26818 -48.79996 -48.73369 -43.77949 -41.93589 -41.07615 -38.23311 -38.00705 -36.92914 -35.43006 -34.17829 -31.45429 -30.58956 -28.36572 -28.00025 -26.96034 -26.76827 -24.52647 -23.30632 -23.09368 -21.97321 -20.85524 -20.47531 -19.79649 -19.55635 -19.30563 -19.14413 -18.60322 -17.67244 -17.58228 -17.50316 -17.25906 -17.13659 -16.49307 -16.16373 -15.89229 -15.82146 -15.67328 -15.61916 -15.39908 -15.19074 -14.99959 -14.89445 -14.74943 -14.43999 -14.24691 -14.13885 -14.04545 -13.92760 -13.60075 -13.35169 -13.32232 -13.17230 -12.92509 -12.72115 -12.36129 -12.15531 -12.03858 -11.86297 -11.76834 -11.61928 -11.58533 -10.99907 -10.80050 -10.76552 -9.13155 -4.94491 -0.89370 0.80234 1.14471 1.46025 1.47927 1.52199 1.68309 1.72775 1.92430 2.08053 2.10726 2.55400 2.62106 2.88339 3.21350 3.29332 3.29911 3.43937 3.52284 3.66276 3.81188 3.86443 4.04026 4.09805 4.22166 4.25398 4.27639 4.37049 4.40125 4.47109 4.51015 4.55835 4.61951 4.67494 4.69318 4.77541 4.80197 4.83440 4.95260 5.01678 5.10799 5.36736 5.38931 5.70461 5.88365 6.32526 6.67232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.032 3.968 4 C 0.434 3.566 5 F -0.184 7.184 6 F -0.174 7.174 7 F -0.188 7.188 8 C -0.135 4.135 9 C -0.093 4.093 10 H 0.122 0.878 11 C 0.075 3.925 12 O -0.348 6.348 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.213 4.213 16 C 0.050 3.950 17 C -0.031 4.031 18 C -0.141 4.141 19 C -0.190 4.190 20 C -0.027 4.027 21 C -0.038 4.038 22 O -0.534 6.534 23 Si 0.767 3.233 24 O -0.166 6.166 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.391 0.609 39 H -0.283 1.283 40 H -0.290 1.290 41 H 0.130 0.870 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -0.468 -1.887 2.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.266 6.266 3 C -0.010 4.010 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.156 7.156 7 F -0.169 7.169 8 C -0.172 4.172 9 C -0.111 4.111 10 H 0.140 0.860 11 C 0.001 3.999 12 O -0.265 6.265 13 C 0.354 3.646 14 O -0.436 6.436 15 C -0.232 4.232 16 C 0.032 3.968 17 C -0.080 4.080 18 C -0.160 4.160 19 C -0.209 4.209 20 C -0.079 4.079 21 C -0.148 4.148 22 O -0.342 6.342 23 Si 0.670 3.330 24 O -0.063 6.063 25 C -0.149 4.149 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.189 0.811 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.241 0.759 39 H -0.209 1.209 40 H -0.216 1.216 41 H 0.148 0.852 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.889 -0.170 -1.660 2.521 hybrid contribution -1.103 0.344 -0.643 1.322 sum 0.786 0.174 -2.302 2.439 Atomic orbital electron populations 1.23271 0.78798 1.05030 1.01963 1.88077 1.22043 1.22593 1.93869 1.24236 1.00733 0.86193 0.89860 1.21478 0.74196 0.78785 0.87607 1.93174 1.37382 1.89259 1.96757 1.93171 1.68660 1.57191 1.96552 1.93191 1.95208 1.71323 1.57199 1.23645 0.99661 1.01675 0.92214 1.22058 0.98117 0.95635 0.95289 0.86030 1.22663 0.84073 0.96132 0.97065 1.86162 1.38838 1.37775 1.63701 1.19985 0.89340 0.78942 0.76306 1.90910 1.34340 1.58837 1.59550 1.21301 0.97953 0.99533 1.04430 1.20866 0.94431 0.93315 0.88233 1.19839 0.84615 0.96089 1.07430 1.22850 0.98514 0.96785 0.97849 1.21863 0.94110 1.00211 1.04764 1.23388 0.93756 0.92581 0.98171 1.24592 0.88042 1.14144 0.87988 1.86651 1.68887 1.57156 1.21545 0.93592 0.77089 0.73575 0.88714 1.83990 1.17919 1.45370 1.59053 1.23355 0.90317 1.05971 0.95245 0.91358 0.87330 0.93229 0.87978 0.85411 0.90493 0.90887 0.82934 0.81084 0.80064 0.81286 0.82403 0.75913 1.20938 1.21639 0.85181 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.45 113.37 1.18 1.18 16 2 O -0.35 -0.83 8.36 -148.98 -1.25 -2.07 16 3 C 0.03 -0.01 0.85 -10.27 -0.01 -0.02 16 4 C 0.43 1.14 2.49 71.98 0.18 1.32 16 5 F -0.18 -0.58 15.19 44.97 0.68 0.11 16 6 F -0.17 -0.36 15.82 44.97 0.71 0.35 16 7 F -0.19 -1.26 17.09 44.97 0.77 -0.50 16 8 C -0.13 0.66 6.53 31.12 0.20 0.86 16 9 C -0.09 0.34 4.20 -10.27 -0.04 0.30 16 10 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 11 C 0.07 0.08 4.96 71.98 0.36 0.44 16 12 O -0.35 -1.24 10.10 -59.15 -0.60 -1.84 16 13 C 0.50 2.65 7.68 68.57 0.53 3.18 16 14 O -0.54 -5.56 15.88 19.15 0.30 -5.25 16 15 C -0.21 -0.22 9.55 22.44 0.21 -0.01 16 16 C 0.05 -0.04 9.39 22.51 0.21 0.18 16 17 C -0.03 0.01 6.84 23.03 0.16 0.17 16 18 C -0.14 0.36 10.90 22.71 0.25 0.60 16 19 C -0.19 0.39 10.76 22.06 0.24 0.63 16 20 C -0.03 0.04 6.20 24.98 0.15 0.20 16 21 C -0.04 0.15 2.98 71.24 0.21 0.36 16 22 O -0.53 0.67 12.88 -148.98 -1.92 -1.25 16 23 Si 0.77 -2.46 32.10 68.60 2.20 -0.26 16 24 O -0.17 -0.05 8.56 -6.08 -0.05 -0.10 16 25 C -0.11 0.29 6.89 31.12 0.21 0.50 16 26 H 0.07 -0.29 6.85 -2.39 -0.02 -0.31 16 27 H 0.11 -0.33 8.14 -2.38 -0.02 -0.35 16 28 H 0.05 -0.01 6.12 -2.39 -0.01 -0.03 16 29 H 0.10 -0.63 6.77 -2.39 -0.02 -0.64 16 30 H 0.13 -0.98 8.07 -2.38 -0.02 -1.00 16 31 H 0.08 0.31 6.11 -2.39 -0.01 0.29 16 32 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 33 H 0.15 -0.19 7.72 -2.91 -0.02 -0.21 16 34 H 0.17 -0.42 7.46 -2.91 -0.02 -0.45 16 35 H 0.18 -1.31 8.06 -2.91 -0.02 -1.34 16 36 H 0.17 -0.79 8.06 -2.91 -0.02 -0.81 16 37 H 0.16 -1.21 7.96 -2.39 -0.02 -1.22 16 38 H 0.39 -2.46 8.70 -74.06 -0.64 -3.10 16 39 H -0.28 -0.76 7.11 99.48 0.71 -0.06 16 40 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 41 H 0.13 -0.69 7.00 -2.38 -0.02 -0.70 16 42 H 0.09 -0.07 8.10 -2.39 -0.02 -0.09 16 Total: 0.00 -17.16 372.26 5.39 -11.77 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: 0.48 Total: -10.85 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 4.05 Total: 9.89 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -3.51 Total: -10.51 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 2.16 Total: -0.04 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.20 Total: -0.26 kcal Total: -17.16 5.39 -11.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946942_17321610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.035 kcal (2) G-P(sol) polarization free energy of solvation -17.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds