Wall clock time and date at job start Sat Mar 6 2021 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35641 * 117.00035 * 2 1 4 4 C 1.38665 * 120.15514 * 359.73222 * 3 2 1 5 5 C 1.38089 * 120.08811 * 180.27027 * 4 3 2 6 6 C 1.38522 * 120.40602 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.85043 * 179.97438 * 6 5 4 8 8 O 1.42894 * 109.47434 * 120.01718 * 7 6 5 9 9 Si 1.86310 * 109.46881 * 0.02562 * 7 6 5 10 10 H 1.48503 * 109.46881 * 299.99791 * 9 7 6 11 11 H 1.48498 * 109.46957 * 59.99956 * 9 7 6 12 12 H 1.48503 * 109.46907 * 180.02562 * 9 7 6 13 13 C 1.37810 * 120.30215 * 359.97438 * 6 5 4 14 14 C 1.39719 * 119.90733 * 0.02562 * 13 6 5 15 15 C 1.47402 * 120.20167 * 179.97438 * 14 13 6 16 16 O 1.21506 * 120.00203 * 180.02562 * 15 14 13 17 17 O 1.34752 * 119.99789 * 0.02562 * 15 14 13 18 18 C 1.45203 * 117.00209 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.46972 * 179.97438 * 18 17 15 20 20 C 1.38228 * 119.99938 * 269.72283 * 19 18 17 21 21 C 1.38237 * 119.99798 * 179.76594 * 20 19 18 22 22 C 1.38237 * 119.99741 * 0.51714 * 21 20 19 23 23 Si 1.86801 * 119.99771 * 179.72313 * 22 21 20 24 24 C 1.86303 * 109.47139 * 270.01569 * 23 22 21 25 25 C 1.86295 * 109.47423 * 30.01664 * 23 22 21 26 26 C 1.86301 * 109.47221 * 150.02109 * 23 22 21 27 27 C 1.38231 * 120.00429 * 359.73942 * 22 21 20 28 28 C 1.38237 * 119.99577 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46798 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47515 * 59.99468 * 1 2 3 32 32 H 1.07996 * 119.95526 * 0.24589 * 4 3 2 33 33 H 1.08007 * 119.79991 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47347 * 240.02376 * 7 6 5 35 35 H 0.96699 * 114.00575 * 180.02562 * 8 7 6 36 36 H 1.08006 * 120.04064 * 180.02562 * 13 6 5 37 37 H 1.09000 * 109.46815 * 299.99998 * 18 17 15 38 38 H 1.09001 * 109.46842 * 59.99998 * 18 17 15 39 39 H 1.07998 * 120.00329 * 0.02562 * 20 19 18 40 40 H 1.08008 * 120.00327 * 180.23419 * 21 20 19 41 41 H 1.09006 * 109.46982 * 59.99997 * 24 23 22 42 42 H 1.09001 * 109.47267 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47252 * 300.00360 * 24 23 22 44 44 H 1.08997 * 109.47253 * 60.00066 * 25 23 22 45 45 H 1.09001 * 109.47388 * 180.02562 * 25 23 22 46 46 H 1.08998 * 109.47533 * 299.99917 * 25 23 22 47 47 H 1.08997 * 109.47541 * 59.99397 * 26 23 22 48 48 H 1.09001 * 109.47129 * 179.97438 * 26 23 22 49 49 H 1.09005 * 109.46825 * 299.99246 * 26 23 22 50 50 H 1.07994 * 120.00319 * 179.97438 * 27 22 21 51 51 H 1.07994 * 119.99977 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2928 2.3735 -0.0056 5 6 1.9212 3.6032 -0.0112 6 6 3.3040 3.6838 -0.0119 7 6 3.9767 5.0323 -0.0186 8 8 4.7927 5.1635 1.1471 9 14 2.6821 6.3721 -0.0242 10 1 1.8340 6.2358 -1.2357 11 1 1.8354 6.2473 1.1894 12 1 3.3450 7.7009 -0.0315 13 6 4.0675 2.5365 -0.0063 14 6 3.4451 1.2856 -0.0006 15 6 4.2553 0.0543 0.0047 16 8 3.7103 -1.0316 0.0092 17 8 5.6005 0.1330 0.0046 18 6 6.3342 -1.1200 0.0106 19 6 7.8142 -0.8356 0.0090 20 6 8.4937 -0.7167 -1.1888 21 6 9.8503 -0.4509 -1.1904 22 6 10.5293 -0.3147 0.0060 23 14 12.3639 0.0367 0.0040 24 6 13.3043 -1.5716 0.0117 25 6 12.8084 1.0086 -1.5219 26 6 12.8090 1.0234 1.5203 27 6 9.8507 -0.4389 1.2039 28 6 8.4932 -0.6998 1.2054 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2142 2.3191 -0.0060 33 1 1.3308 4.5076 -0.0160 34 1 4.5982 5.1239 -0.9094 35 1 5.2569 6.0095 1.2092 36 1 5.1454 2.6043 -0.0064 37 1 6.0742 -1.6890 0.9032 38 1 6.0745 -1.6973 -0.8767 39 1 7.9641 -0.8272 -2.1235 40 1 10.3807 -0.3543 -2.1263 41 1 13.0439 -2.1490 -0.8755 42 1 14.3748 -1.3666 0.0100 43 1 13.0442 -2.1403 0.9045 44 1 12.2583 1.9495 -1.5265 45 1 13.8790 1.2132 -1.5234 46 1 12.5481 0.4313 -2.4091 47 1 12.5489 0.4548 2.4131 48 1 13.8796 1.2280 1.5193 49 1 12.2588 1.9644 1.5158 50 1 10.3812 -0.3329 2.1386 51 1 7.9631 -0.7972 2.1412 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_12496218_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:24:57 Heat of formation + Delta-G solvation = -142.703144 kcal Electronic energy + Delta-G solvation = -30998.708463 eV Core-core repulsion = 26759.041962 eV Total energy + Delta-G solvation = -4239.666501 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79691 -40.72421 -39.79120 -39.13185 -37.29706 -37.10284 -33.28585 -32.53537 -31.94189 -31.84535 -29.57393 -28.70326 -28.43188 -28.40058 -27.43426 -26.16572 -25.23468 -23.43770 -22.91747 -21.97261 -21.42473 -19.38766 -18.73297 -18.34901 -18.01524 -17.42673 -17.33323 -16.94554 -16.70316 -16.22520 -15.94497 -15.84124 -15.77600 -15.44448 -14.94668 -14.54046 -14.40324 -14.34225 -14.16330 -14.13014 -14.04112 -13.92717 -13.82505 -13.78757 -13.40747 -13.35578 -13.24574 -13.23593 -13.08975 -13.01509 -12.65562 -12.52672 -12.44415 -12.14216 -11.99661 -11.98922 -11.79175 -11.46244 -11.27693 -11.01254 -10.89384 -10.80221 -10.40000 -10.20495 -9.74021 -9.64461 -9.29318 -0.33041 0.18447 0.23012 0.58700 1.07113 1.35717 1.42548 1.63454 1.71365 1.76543 1.83295 1.86317 2.05570 2.16504 2.55750 2.62136 3.00654 3.30175 3.53400 3.65638 3.74490 3.87790 3.89340 3.98318 4.11017 4.16326 4.18098 4.19345 4.30832 4.31962 4.46912 4.52383 4.54807 4.56873 4.69836 4.71413 4.72993 4.74460 4.76746 4.76940 4.77864 4.79804 4.91404 5.03353 5.04787 5.19600 5.28682 5.41220 5.46626 5.51812 5.53360 5.54905 5.57826 5.65198 5.67629 6.15063 6.24474 6.54547 6.97645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.196 3.804 4 C -0.216 4.216 5 C -0.045 4.045 6 C -0.130 4.130 7 C -0.076 4.076 8 O -0.544 6.544 9 Si 0.942 3.058 10 H -0.249 1.249 11 H -0.247 1.247 12 H -0.254 1.254 13 C 0.009 3.991 14 C -0.163 4.163 15 C 0.510 3.490 16 O -0.487 6.487 17 O -0.349 6.349 18 C 0.111 3.889 19 C -0.088 4.088 20 C -0.106 4.106 21 C -0.092 4.092 22 C -0.361 4.361 23 Si 1.060 2.940 24 C -0.450 4.450 25 C -0.449 4.449 26 C -0.450 4.450 27 C -0.091 4.091 28 C -0.105 4.105 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.381 0.619 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 3.809 -1.115 4.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.148 3.852 4 C -0.235 4.235 5 C -0.063 4.063 6 C -0.130 4.130 7 C -0.186 4.186 8 O -0.350 6.350 9 Si 0.765 3.235 10 H -0.173 1.173 11 H -0.170 1.170 12 H -0.178 1.178 13 C -0.009 4.009 14 C -0.165 4.165 15 C 0.354 3.646 16 O -0.375 6.375 17 O -0.267 6.267 18 C 0.037 3.963 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.403 4.403 23 Si 1.251 2.749 24 C -0.557 4.557 25 C -0.557 4.557 26 C -0.557 4.557 27 C -0.109 4.109 28 C -0.123 4.123 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.348 3.260 -1.005 3.429 hybrid contribution -0.029 0.163 -0.095 0.191 sum -0.377 3.423 -1.099 3.615 Atomic orbital electron populations 1.23256 0.77870 1.04858 1.01628 1.86350 1.21549 1.25213 1.86204 1.19036 0.90500 0.85244 0.90408 1.21121 1.00711 0.91220 1.10429 1.21028 0.93785 0.97677 0.93785 1.19108 0.92797 0.94231 1.06877 1.24630 1.01595 1.01226 0.91142 1.86512 1.64472 1.41887 1.42145 0.85818 0.78794 0.77212 0.81721 1.17297 1.16984 1.17793 1.21167 1.01002 0.89082 0.89626 1.18448 0.89484 0.92117 1.16452 1.20762 0.80991 0.89134 0.73675 1.90901 1.72609 1.29264 1.44739 1.86604 1.19147 1.36399 1.84533 1.21838 0.87236 0.83623 1.03558 1.19489 0.93005 1.02279 0.94084 1.21156 0.95008 0.99030 0.97204 1.21072 0.93884 0.97806 0.98215 1.27471 1.16734 1.01897 0.94182 0.78183 0.62110 0.67234 0.67345 1.26128 1.08390 1.16525 1.04636 1.26131 1.05480 1.09000 1.15104 1.26134 1.05476 1.09146 1.14974 1.21074 0.93879 0.97759 0.98215 1.21167 0.94997 0.98884 0.97271 0.87552 0.92150 0.92155 0.83851 0.85307 0.90336 0.77131 0.83277 0.90166 0.90178 0.86104 0.85902 0.91172 0.91038 0.91159 0.91020 0.90964 0.91176 0.91162 0.90969 0.91008 0.85884 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.08 8.57 -40.50 -0.35 -1.43 16 3 C 0.20 0.64 6.70 -38.67 -0.26 0.38 16 4 C -0.22 -0.18 9.03 -39.48 -0.36 -0.54 16 5 C -0.04 -0.03 8.66 -39.53 -0.34 -0.37 16 6 C -0.13 -0.16 5.42 -104.68 -0.57 -0.73 16 7 C -0.08 0.06 2.81 36.00 0.10 0.16 16 8 O -0.54 0.11 12.74 -35.23 -0.45 -0.34 16 9 Si 0.94 -1.22 25.05 -169.99 -4.26 -5.48 16 10 H -0.25 0.24 7.11 56.52 0.40 0.64 16 11 H -0.25 0.00 7.11 56.52 0.40 0.40 16 12 H -0.25 0.27 7.11 56.52 0.40 0.67 16 13 C 0.01 0.02 9.16 -39.18 -0.36 -0.34 16 14 C -0.16 -0.64 5.88 -104.86 -0.62 -1.26 16 15 C 0.51 2.75 7.89 34.46 0.27 3.02 16 16 O -0.49 -3.78 14.95 -26.59 -0.40 -4.18 16 17 O -0.35 -1.44 9.45 -40.63 -0.38 -1.83 16 18 C 0.11 0.31 5.60 36.01 0.20 0.51 16 19 C -0.09 -0.21 5.52 -104.63 -0.58 -0.78 16 20 C -0.11 -0.17 9.70 -39.59 -0.38 -0.56 16 21 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 22 C -0.36 -0.05 4.59 -39.58 -0.18 -0.23 16 23 Si 1.06 -2.50 12.32 -169.99 -2.09 -4.60 16 24 C -0.45 0.61 8.65 101.05 0.87 1.48 16 25 C -0.45 0.78 8.53 101.05 0.86 1.64 16 26 C -0.45 0.75 8.53 101.05 0.86 1.61 16 27 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 28 C -0.11 -0.19 9.70 -39.58 -0.38 -0.57 16 29 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 30 H 0.06 -0.12 7.67 -51.93 -0.40 -0.52 16 31 H 0.06 -0.13 7.65 -51.93 -0.40 -0.53 16 32 H 0.14 -0.26 6.30 -52.49 -0.33 -0.59 16 33 H 0.13 -0.16 4.85 -52.48 -0.25 -0.42 16 34 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 35 H 0.38 -1.74 8.74 45.56 0.40 -1.35 16 36 H 0.15 0.25 7.61 -52.48 -0.40 -0.15 16 37 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 38 H 0.08 0.18 8.08 -51.93 -0.42 -0.23 16 39 H 0.12 0.05 8.06 -52.49 -0.42 -0.38 16 40 H 0.12 -0.16 7.43 -52.48 -0.39 -0.55 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 45 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 46 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 47 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 48 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 49 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 50 H 0.12 -0.15 7.43 -52.49 -0.39 -0.54 16 51 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 LS Contribution 426.35 15.07 6.43 6.43 Total: 0.00 -8.63 426.35 -9.28 -17.91 By element: Atomic # 1 Polarization: -2.84 SS G_CDS: -7.17 Total: -10.01 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.60 Total: 3.53 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -1.58 Total: -7.78 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: -6.35 Total: -10.08 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -8.63 -9.28 -17.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496218_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.796 kcal (2) G-P(sol) polarization free energy of solvation -8.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds