Wall clock time and date at job start Sat Mar 6 2021 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35641 * 117.00035 * 2 1 4 4 C 1.38665 * 120.15514 * 359.73222 * 3 2 1 5 5 C 1.38089 * 120.08811 * 180.27027 * 4 3 2 6 6 C 1.38522 * 120.40602 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.85043 * 179.97438 * 6 5 4 8 8 O 1.42894 * 109.47434 * 120.01718 * 7 6 5 9 9 Si 1.86310 * 109.46881 * 0.02562 * 7 6 5 10 10 H 1.48503 * 109.46881 * 299.99791 * 9 7 6 11 11 H 1.48498 * 109.46957 * 59.99956 * 9 7 6 12 12 H 1.48503 * 109.46907 * 180.02562 * 9 7 6 13 13 C 1.37810 * 120.30215 * 359.97438 * 6 5 4 14 14 C 1.39719 * 119.90733 * 0.02562 * 13 6 5 15 15 C 1.47402 * 120.20167 * 179.97438 * 14 13 6 16 16 O 1.21506 * 120.00203 * 180.02562 * 15 14 13 17 17 O 1.34752 * 119.99789 * 0.02562 * 15 14 13 18 18 C 1.45203 * 117.00209 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.46972 * 179.97438 * 18 17 15 20 20 C 1.38228 * 119.99938 * 269.72283 * 19 18 17 21 21 C 1.38237 * 119.99798 * 179.76594 * 20 19 18 22 22 C 1.38237 * 119.99741 * 0.51714 * 21 20 19 23 23 Si 1.86801 * 119.99771 * 179.72313 * 22 21 20 24 24 C 1.86303 * 109.47139 * 270.01569 * 23 22 21 25 25 C 1.86295 * 109.47423 * 30.01664 * 23 22 21 26 26 C 1.86301 * 109.47221 * 150.02109 * 23 22 21 27 27 C 1.38231 * 120.00429 * 359.73942 * 22 21 20 28 28 C 1.38237 * 119.99577 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46798 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47515 * 59.99468 * 1 2 3 32 32 H 1.07996 * 119.95526 * 0.24589 * 4 3 2 33 33 H 1.08007 * 119.79991 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47347 * 240.02376 * 7 6 5 35 35 H 0.96699 * 114.00575 * 180.02562 * 8 7 6 36 36 H 1.08006 * 120.04064 * 180.02562 * 13 6 5 37 37 H 1.09000 * 109.46815 * 299.99998 * 18 17 15 38 38 H 1.09001 * 109.46842 * 59.99998 * 18 17 15 39 39 H 1.07998 * 120.00329 * 0.02562 * 20 19 18 40 40 H 1.08008 * 120.00327 * 180.23419 * 21 20 19 41 41 H 1.09006 * 109.46982 * 59.99997 * 24 23 22 42 42 H 1.09001 * 109.47267 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47252 * 300.00360 * 24 23 22 44 44 H 1.08997 * 109.47253 * 60.00066 * 25 23 22 45 45 H 1.09001 * 109.47388 * 180.02562 * 25 23 22 46 46 H 1.08998 * 109.47533 * 299.99917 * 25 23 22 47 47 H 1.08997 * 109.47541 * 59.99397 * 26 23 22 48 48 H 1.09001 * 109.47129 * 179.97438 * 26 23 22 49 49 H 1.09005 * 109.46825 * 299.99246 * 26 23 22 50 50 H 1.07994 * 120.00319 * 179.97438 * 27 22 21 51 51 H 1.07994 * 119.99977 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2928 2.3735 -0.0056 5 6 1.9212 3.6032 -0.0112 6 6 3.3040 3.6838 -0.0119 7 6 3.9767 5.0323 -0.0186 8 8 4.7927 5.1635 1.1471 9 14 2.6821 6.3721 -0.0242 10 1 1.8340 6.2358 -1.2357 11 1 1.8354 6.2473 1.1894 12 1 3.3450 7.7009 -0.0315 13 6 4.0675 2.5365 -0.0063 14 6 3.4451 1.2856 -0.0006 15 6 4.2553 0.0543 0.0047 16 8 3.7103 -1.0316 0.0092 17 8 5.6005 0.1330 0.0046 18 6 6.3342 -1.1200 0.0106 19 6 7.8142 -0.8356 0.0090 20 6 8.4937 -0.7167 -1.1888 21 6 9.8503 -0.4509 -1.1904 22 6 10.5293 -0.3147 0.0060 23 14 12.3639 0.0367 0.0040 24 6 13.3043 -1.5716 0.0117 25 6 12.8084 1.0086 -1.5219 26 6 12.8090 1.0234 1.5203 27 6 9.8507 -0.4389 1.2039 28 6 8.4932 -0.6998 1.2054 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2142 2.3191 -0.0060 33 1 1.3308 4.5076 -0.0160 34 1 4.5982 5.1239 -0.9094 35 1 5.2569 6.0095 1.2092 36 1 5.1454 2.6043 -0.0064 37 1 6.0742 -1.6890 0.9032 38 1 6.0745 -1.6973 -0.8767 39 1 7.9641 -0.8272 -2.1235 40 1 10.3807 -0.3543 -2.1263 41 1 13.0439 -2.1490 -0.8755 42 1 14.3748 -1.3666 0.0100 43 1 13.0442 -2.1403 0.9045 44 1 12.2583 1.9495 -1.5265 45 1 13.8790 1.2132 -1.5234 46 1 12.5481 0.4313 -2.4091 47 1 12.5489 0.4548 2.4131 48 1 13.8796 1.2280 1.5193 49 1 12.2588 1.9644 1.5158 50 1 10.3812 -0.3329 2.1386 51 1 7.9631 -0.7972 2.1412 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12496218_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:24:56 Heat of formation + Delta-G solvation = -134.863383 kcal Electronic energy + Delta-G solvation = -30998.368505 eV Core-core repulsion = 26759.041962 eV Total energy + Delta-G solvation = -4239.326543 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.01703 -40.92916 -39.91073 -39.18870 -37.51241 -37.22622 -33.43565 -32.64061 -32.00255 -31.90034 -29.43225 -28.67406 -28.27110 -28.25270 -27.59616 -26.15560 -25.41986 -23.49867 -23.03442 -22.07724 -21.62173 -19.51922 -18.89594 -18.37633 -18.16728 -17.63968 -17.47408 -17.08318 -16.78459 -16.24541 -15.98833 -15.93275 -15.80615 -15.53080 -14.96609 -14.52258 -14.48058 -14.38282 -14.19151 -14.12234 -14.03414 -13.90165 -13.80229 -13.71114 -13.53331 -13.37909 -13.13769 -13.08787 -13.03656 -12.94490 -12.71291 -12.50816 -12.47834 -12.12494 -12.09133 -11.96045 -11.74324 -11.73201 -11.57335 -10.90794 -10.78417 -10.73661 -10.34100 -10.30703 -9.82132 -9.70728 -9.39401 -0.50889 0.09150 0.13345 0.50733 1.17609 1.34751 1.48540 1.55179 1.58033 1.84785 1.93311 2.04856 2.12366 2.14806 2.47381 2.68064 2.93209 3.38005 3.41458 3.61906 3.66766 3.74900 3.79026 3.96143 4.02818 4.13097 4.19668 4.22690 4.27561 4.32398 4.32662 4.52191 4.53791 4.65502 4.69407 4.69580 4.84003 4.86443 4.86709 4.90953 4.91789 4.92299 4.92759 4.94462 4.97042 5.14703 5.15799 5.23632 5.39762 5.46521 5.55646 5.58112 5.61284 5.69859 5.73003 6.10366 6.18310 6.61460 6.85145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.313 6.313 3 C 0.182 3.818 4 C -0.211 4.211 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.080 4.080 8 O -0.564 6.564 9 Si 0.977 3.023 10 H -0.250 1.250 11 H -0.265 1.265 12 H -0.255 1.255 13 C 0.005 3.995 14 C -0.188 4.188 15 C 0.509 3.491 16 O -0.521 6.521 17 O -0.350 6.350 18 C 0.110 3.890 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.372 4.372 23 Si 1.129 2.871 24 C -0.463 4.463 25 C -0.461 4.461 26 C -0.462 4.462 27 C -0.101 4.101 28 C -0.121 4.121 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.399 0.601 36 H 0.148 0.852 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.142 0.858 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 5.396 -1.414 5.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.134 3.866 4 C -0.229 4.229 5 C -0.063 4.063 6 C -0.136 4.136 7 C -0.190 4.190 8 O -0.373 6.373 9 Si 0.800 3.200 10 H -0.174 1.174 11 H -0.190 1.190 12 H -0.179 1.179 13 C -0.013 4.013 14 C -0.190 4.190 15 C 0.355 3.645 16 O -0.411 6.411 17 O -0.268 6.268 18 C 0.037 3.963 19 C -0.104 4.104 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.410 4.410 23 Si 1.316 2.684 24 C -0.570 4.570 25 C -0.569 4.569 26 C -0.570 4.570 27 C -0.118 4.118 28 C -0.139 4.139 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.249 0.751 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.160 0.840 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.001 4.860 -1.308 5.033 hybrid contribution -0.122 -0.310 0.016 0.333 sum -0.123 4.550 -1.292 4.732 Atomic orbital electron populations 1.23524 0.75903 1.05868 1.03148 1.86310 1.23793 1.25966 1.86361 1.19260 0.90470 0.85941 0.90937 1.21422 1.01965 0.90354 1.09133 1.21345 0.93795 0.98410 0.92699 1.19444 0.93325 0.94830 1.06048 1.24779 1.02307 1.00198 0.91713 1.86465 1.64872 1.43557 1.42443 0.85323 0.77717 0.76456 0.80506 1.17379 1.18950 1.17921 1.21189 1.01110 0.89027 0.89991 1.18604 0.90089 0.91977 1.18341 1.21149 0.81215 0.89395 0.72722 1.90863 1.73126 1.30483 1.46666 1.86610 1.18840 1.37096 1.84211 1.21905 0.87759 0.83245 1.03395 1.19530 0.92521 1.03545 0.94801 1.21363 0.95815 0.99338 0.97239 1.21404 0.93592 0.97359 0.99438 1.28144 1.18526 1.00651 0.93709 0.77159 0.59253 0.65749 0.66275 1.26296 1.08997 1.17287 1.04393 1.26260 1.05784 1.09130 1.15683 1.26277 1.05779 1.09281 1.15615 1.21391 0.93570 0.97427 0.99448 1.21361 0.95835 0.99379 0.97299 0.86965 0.90677 0.90462 0.81142 0.83241 0.88542 0.75059 0.83381 0.90442 0.90239 0.85508 0.83899 0.91409 0.90592 0.91461 0.91206 0.90573 0.90883 0.90972 0.90573 0.91240 0.84041 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.88 8.57 -68.63 -0.59 -3.47 16 3 C 0.18 1.41 6.70 22.86 0.15 1.56 16 4 C -0.21 -0.28 9.03 22.34 0.20 -0.08 16 5 C -0.04 -0.03 8.66 22.30 0.19 0.17 16 6 C -0.14 -0.35 5.42 -19.90 -0.11 -0.45 16 7 C -0.08 0.18 2.81 71.23 0.20 0.38 16 8 O -0.56 0.41 12.74 -148.98 -1.90 -1.49 16 9 Si 0.98 -3.70 25.05 68.60 1.72 -1.98 16 10 H -0.25 0.91 7.11 99.48 0.71 1.62 16 11 H -0.27 0.20 7.11 99.48 0.71 0.90 16 12 H -0.26 0.91 7.11 99.48 0.71 1.62 16 13 C 0.01 0.03 9.16 22.53 0.21 0.24 16 14 C -0.19 -1.87 5.88 -20.02 -0.12 -1.99 16 15 C 0.51 6.94 7.89 70.24 0.55 7.50 16 16 O -0.52 -9.76 14.95 26.82 0.40 -9.36 16 17 O -0.35 -3.86 9.45 -56.62 -0.54 -4.39 16 18 C 0.11 0.91 5.60 71.24 0.40 1.31 16 19 C -0.10 -0.68 5.52 -19.87 -0.11 -0.79 16 20 C -0.12 -0.55 9.70 22.27 0.22 -0.33 16 21 C -0.10 -0.16 9.29 22.27 0.21 0.05 16 22 C -0.37 -0.07 4.59 22.27 0.10 0.03 16 23 Si 1.13 -6.23 12.32 68.60 0.85 -5.39 16 24 C -0.46 1.55 8.65 113.37 0.98 2.53 16 25 C -0.46 2.05 8.53 113.37 0.97 3.02 16 26 C -0.46 1.92 8.53 113.37 0.97 2.89 16 27 C -0.10 -0.20 9.29 22.27 0.21 0.01 16 28 C -0.12 -0.61 9.70 22.27 0.22 -0.40 16 29 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 31 H 0.08 -0.39 7.65 -2.39 -0.02 -0.40 16 32 H 0.17 -0.86 6.30 -2.91 -0.02 -0.88 16 33 H 0.15 -0.60 4.85 -2.91 -0.01 -0.61 16 34 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 35 H 0.40 -3.90 8.74 -74.06 -0.65 -4.55 16 36 H 0.15 0.77 7.61 -2.91 -0.02 0.75 16 37 H 0.08 0.62 8.08 -2.39 -0.02 0.61 16 38 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 40 H 0.14 -0.46 7.43 -2.91 -0.02 -0.48 16 41 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 42 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 44 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 45 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 46 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 47 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 48 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 49 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 50 H 0.14 -0.36 7.43 -2.91 -0.02 -0.39 16 51 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 Total: 0.00 -21.50 426.35 7.54 -13.96 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: 1.05 Total: -4.62 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.55 Total: 16.74 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -2.62 Total: -18.71 kcal Atomic # 14 Polarization: -9.93 SS G_CDS: 2.56 Total: -7.36 kcal Total: -21.50 7.54 -13.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496218_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.903 kcal (2) G-P(sol) polarization free energy of solvation -21.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds