Wall clock time and date at job start Sat Mar 6 2021 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.46933 * 2 1 4 4 C 1.86291 * 109.47222 * 240.00143 * 2 1 3 5 5 C 1.86303 * 109.46923 * 119.99749 * 2 1 3 6 6 O 1.45198 * 109.46824 * 60.00436 * 5 2 1 7 7 C 1.34728 * 117.00462 * 75.00040 * 6 5 2 8 8 O 1.21488 * 119.99598 * 359.97438 * 7 6 5 9 9 C 1.47598 * 120.00216 * 180.02562 * 7 6 5 10 10 C 1.39681 * 120.12196 * 359.97438 * 9 7 6 11 11 C 1.37838 * 119.87391 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.12360 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.87476 * 179.97438 * 12 11 10 14 14 C 1.38690 * 120.24530 * 359.97438 * 12 11 10 15 15 C 1.50701 * 119.93393 * 179.97438 * 14 12 11 16 16 O 1.42895 * 109.47079 * 195.00491 * 15 14 12 17 17 Si 1.86301 * 109.47149 * 314.99986 * 15 14 12 18 18 H 1.48506 * 109.47302 * 59.99966 * 17 15 14 19 19 H 1.48503 * 109.47334 * 300.00099 * 17 15 14 20 20 H 1.48500 * 109.47376 * 180.02562 * 17 15 14 21 21 C 1.37786 * 120.12780 * 0.23559 * 14 12 11 22 22 H 1.09004 * 109.47400 * 299.99848 * 1 2 3 23 23 H 1.08998 * 109.47320 * 59.99859 * 1 2 3 24 24 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46858 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47232 * 300.00195 * 3 2 1 27 27 H 1.09000 * 109.47387 * 60.00120 * 3 2 1 28 28 H 1.09006 * 109.46689 * 300.00027 * 4 2 1 29 29 H 1.09001 * 109.47642 * 59.99501 * 4 2 1 30 30 H 1.08997 * 109.47465 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47392 * 299.99877 * 5 2 1 32 32 H 1.08997 * 109.46782 * 179.97438 * 5 2 1 33 33 H 1.07999 * 120.06702 * 359.97438 * 10 9 7 34 34 H 1.08005 * 119.93720 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47380 * 74.99888 * 15 14 12 36 36 H 0.96696 * 114.00435 * 59.99627 * 16 15 14 37 37 H 1.08003 * 120.06814 * 179.72364 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.0000 -2.2471 1.5211 7 6 2.5964 -3.1068 0.6724 8 8 3.4960 -2.7230 -0.0483 9 6 2.1562 -4.5145 0.6173 10 6 1.1218 -4.9584 1.4445 11 6 0.7152 -6.2742 1.3892 12 6 1.3312 -7.1568 0.5151 13 9 0.9289 -8.4456 0.4655 14 6 2.3587 -6.7215 -0.3084 15 6 3.0237 -7.6870 -1.2554 16 8 4.2483 -7.1227 -1.7287 17 14 3.3793 -9.2845 -0.3653 18 1 2.1068 -9.8710 0.1267 19 1 4.2800 -9.0202 0.7854 20 1 4.0352 -10.2356 -1.2983 21 6 2.7763 -5.4094 -0.2585 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 0.0005 26 1 2.1206 2.2703 -0.8899 27 1 2.1207 2.2703 0.8900 28 1 2.1206 -1.9059 -1.5210 29 1 2.1207 -0.3644 -2.4111 30 1 3.5740 -0.8778 -1.5213 31 1 2.1207 -0.3643 2.4112 32 1 3.5740 -0.8786 1.5210 33 1 0.6421 -4.2721 2.1266 34 1 -0.0842 -6.6186 2.0286 35 1 2.3626 -7.8811 -2.1000 36 1 4.8859 -6.9239 -1.0295 37 1 3.5796 -5.0726 -0.8971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12496220_4858416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:30:40 Heat of formation + Delta-G solvation = -152.121150 kcal Electronic energy + Delta-G solvation = -20858.068308 eV Core-core repulsion = 17446.739047 eV Total energy + Delta-G solvation = -3411.329261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.44227 -41.72026 -40.14339 -37.78663 -37.40534 -32.95124 -32.16397 -29.65597 -28.44066 -28.35133 -28.19621 -27.06001 -24.97481 -23.26592 -21.80895 -19.35151 -19.01690 -18.15652 -18.03470 -17.47042 -17.39672 -17.12173 -16.08071 -15.74758 -15.24897 -15.18069 -14.87500 -14.59571 -14.28843 -14.10365 -13.97100 -13.89303 -13.77896 -13.48857 -13.38679 -13.23151 -13.04762 -12.95050 -12.86931 -12.50123 -12.42704 -12.03937 -11.68542 -11.33931 -10.96055 -10.84397 -10.76125 -10.39910 -10.13413 -9.77297 -0.65277 -0.02832 1.05564 1.30264 1.41269 1.46091 1.49580 1.60212 1.88557 1.90024 2.06845 2.45726 2.57804 2.94024 3.24668 3.32528 3.61135 3.70480 3.99792 4.07905 4.26786 4.43314 4.57439 4.71432 4.74994 4.75607 4.78526 4.81670 4.82851 4.83763 4.87965 4.88588 4.93890 5.06283 5.29449 5.53626 5.55222 5.61579 5.64596 6.53914 6.66302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.058 2.942 3 C -0.453 4.453 4 C -0.458 4.458 5 C -0.254 4.254 6 O -0.332 6.332 7 C 0.492 3.508 8 O -0.509 6.509 9 C -0.144 4.144 10 C -0.031 4.031 11 C -0.152 4.152 12 C 0.115 3.885 13 F -0.124 7.124 14 C -0.165 4.165 15 C -0.075 4.075 16 O -0.547 6.547 17 Si 0.969 3.031 18 H -0.235 1.235 19 H -0.260 1.260 20 H -0.271 1.271 21 C -0.023 4.023 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.135 0.865 36 H 0.391 0.609 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 1.660 3.388 4.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.250 2.750 3 C -0.561 4.561 4 C -0.563 4.563 5 C -0.372 4.372 6 O -0.247 6.247 7 C 0.338 3.662 8 O -0.399 6.399 9 C -0.145 4.145 10 C -0.049 4.049 11 C -0.170 4.170 12 C 0.096 3.904 13 F -0.103 7.103 14 C -0.167 4.167 15 C -0.185 4.185 16 O -0.354 6.354 17 Si 0.791 3.209 18 H -0.158 1.158 19 H -0.184 1.184 20 H -0.196 1.196 21 C -0.041 4.041 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.189 0.811 34 H 0.191 0.809 35 H 0.152 0.848 36 H 0.240 0.760 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.468 0.887 3.083 4.047 hybrid contribution 0.444 0.243 0.069 0.511 sum -2.024 1.130 3.152 3.913 Atomic orbital electron populations 1.26145 1.20300 1.04559 1.05159 0.78809 0.66734 0.66054 0.63366 1.26096 1.06462 1.18104 1.05438 1.26566 1.06181 1.07064 1.16453 1.28682 1.05305 0.83071 1.20104 1.86438 1.58796 1.21921 1.57556 1.21230 0.80273 0.87075 0.77670 1.90855 1.29643 1.78398 1.41015 1.19254 1.01867 0.90484 1.02934 1.21632 0.92477 0.95497 0.95249 1.21458 1.02518 0.92883 1.00189 1.18044 0.95557 0.79440 0.97384 1.91596 1.89381 1.33976 1.95318 1.20358 0.99160 0.96541 1.00605 1.24942 0.88203 1.03100 1.02231 1.86497 1.26046 1.84662 1.38205 0.85659 0.80769 0.76134 0.78340 1.15811 1.18372 1.19598 1.20942 0.97965 0.90319 0.94914 0.90024 0.90909 0.91561 0.91171 0.90601 0.89932 0.93051 0.91800 0.91911 0.84671 0.90555 0.81138 0.80931 0.84786 0.75966 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.43 8.65 113.37 0.98 2.41 16 2 Si 1.06 -3.76 12.12 68.60 0.83 -2.93 16 3 C -0.45 1.74 8.65 113.37 0.98 2.72 16 4 C -0.46 -1.52 7.10 113.37 0.80 -0.71 16 5 C -0.25 0.56 5.40 113.37 0.61 1.17 16 6 O -0.33 -0.36 9.16 -56.38 -0.52 -0.88 16 7 C 0.49 2.00 6.67 70.29 0.47 2.46 16 8 O -0.51 -4.16 12.05 19.87 0.24 -3.92 16 9 C -0.14 -0.21 5.87 -20.10 -0.12 -0.33 16 10 C -0.03 0.09 9.61 22.52 0.22 0.31 16 11 C -0.15 0.54 10.01 22.27 0.22 0.76 16 12 C 0.12 -0.02 6.67 22.48 0.15 0.13 16 13 F -0.12 -0.17 12.82 44.97 0.58 0.40 16 14 C -0.17 -0.07 5.13 -19.86 -0.10 -0.18 16 15 C -0.07 0.03 2.97 71.24 0.21 0.25 16 16 O -0.55 -0.33 11.64 -148.98 -1.73 -2.07 16 17 Si 0.97 0.26 26.09 68.60 1.79 2.05 16 18 H -0.23 -0.34 5.28 99.48 0.53 0.18 16 19 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 20 H -0.27 -0.90 7.11 99.48 0.71 -0.20 16 21 C -0.02 -0.04 8.78 22.52 0.20 0.16 16 22 H 0.08 -0.41 7.96 -2.39 -0.02 -0.42 16 23 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 24 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 25 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.08 -0.48 7.96 -2.39 -0.02 -0.49 16 28 H 0.05 0.31 6.28 -2.38 -0.01 0.30 16 29 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 30 H 0.06 0.38 7.42 -2.39 -0.02 0.36 16 31 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 32 H 0.08 -0.05 7.52 -2.39 -0.02 -0.07 16 33 H 0.17 -1.23 7.61 -2.91 -0.02 -1.25 16 34 H 0.17 -1.46 8.06 -2.91 -0.02 -1.49 16 35 H 0.13 -0.28 7.96 -2.39 -0.02 -0.30 16 36 H 0.39 -2.20 8.42 -74.06 -0.62 -2.82 16 37 H 0.15 0.35 6.65 -2.91 -0.02 0.33 16 Total: 0.00 -12.31 312.51 6.84 -5.47 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: 1.03 Total: -7.29 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.63 Total: 9.16 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -2.01 Total: -6.87 kcal Atomic # 9 Polarization: -0.17 SS G_CDS: 0.58 Total: 0.40 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.62 Total: -0.87 kcal Total: -12.31 6.84 -5.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496220_4858416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.653 kcal (2) G-P(sol) polarization free energy of solvation -12.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds