Wall clock time and date at job start Sat Mar 6 2021 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47331 * 120.00317 * 2 1 3 5 5 C 1.35092 * 126.07494 * 255.35263 * 4 2 1 6 6 N 1.35039 * 107.97664 * 180.12352 * 5 4 2 7 7 C 1.46503 * 125.92587 * 179.83609 * 6 5 4 8 8 C 1.50693 * 109.46855 * 124.71918 * 7 6 5 9 9 O 1.20828 * 120.00598 * 359.97438 * 8 7 6 10 10 O 1.34235 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.45196 * 116.99918 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46747 * 179.97438 * 11 10 8 13 13 H 1.08990 * 112.85335 * 316.19896 * 12 11 10 14 14 C 1.53790 * 113.68760 * 87.46730 * 12 11 10 15 15 C 1.53776 * 87.07856 * 139.99089 * 14 12 11 16 16 H 1.09002 * 113.69340 * 89.12692 * 15 14 12 17 17 O 1.42903 * 113.61415 * 220.01390 * 15 14 12 18 18 C 1.53774 * 87.08537 * 334.56697 * 15 14 12 19 19 N 1.40063 * 108.13940 * 359.57486 * 6 5 4 20 20 C 1.31622 * 108.11067 * 0.26067 * 19 6 5 21 21 C 1.48421 * 126.03878 * 179.97438 * 20 19 6 22 22 C 1.39325 * 120.11805 * 144.75282 * 21 20 19 23 23 C 1.38023 * 119.87395 * 179.72169 * 22 21 20 24 24 C 1.38319 * 120.12254 * 0.55411 * 23 22 21 25 25 C 1.38320 * 120.24217 * 359.71995 * 24 23 22 26 26 C 1.38027 * 120.11832 * 0.02562 * 25 24 23 27 27 H 0.96706 * 113.99930 * 300.00362 * 1 2 3 28 28 H 1.08997 * 109.47112 * 240.00375 * 2 1 3 29 29 H 1.48505 * 110.00028 * 178.68359 * 3 2 1 30 30 H 1.48499 * 110.00145 * 300.00066 * 3 2 1 31 31 H 1.08001 * 126.00942 * 359.97438 * 5 4 2 32 32 H 1.08996 * 109.47458 * 4.71554 * 7 6 5 33 33 H 1.09002 * 109.46760 * 244.71883 * 7 6 5 34 34 H 1.08999 * 109.47364 * 60.00287 * 11 10 8 35 35 H 1.08999 * 109.47492 * 299.99633 * 11 10 8 36 36 H 1.08994 * 113.61345 * 25.44156 * 14 12 11 37 37 H 1.08999 * 113.60844 * 254.53724 * 14 12 11 38 38 H 0.96700 * 114.00311 * 277.50236 * 17 15 14 39 39 H 1.08995 * 113.62199 * 139.98636 * 18 15 14 40 40 H 1.09008 * 113.61305 * 270.80075 * 18 15 14 41 41 H 1.07998 * 120.06027 * 359.97411 * 22 21 20 42 42 H 1.08003 * 119.93862 * 180.27762 * 23 22 21 43 43 H 1.08005 * 119.88091 * 179.74689 * 24 23 22 44 44 H 1.07998 * 119.94711 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.05884 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4568 -0.1246 2.3284 6 7 2.7872 -1.0991 3.2029 7 6 3.3916 -0.9009 4.5227 8 6 2.5377 -1.5659 5.5712 9 8 1.5275 -2.1456 5.2492 10 8 2.8986 -1.5136 6.8630 11 6 2.0281 -2.1758 7.8180 12 6 2.5987 -2.0105 9.2280 13 1 3.6754 -2.1747 9.2709 14 6 2.1437 -0.7208 9.9314 15 6 2.0187 -1.5585 11.2149 16 1 2.9361 -1.5998 11.8021 17 8 0.8708 -1.2329 12.0014 18 6 1.8149 -2.7804 10.3039 19 7 2.4463 -2.3316 2.6317 20 6 1.9300 -2.1028 1.4428 21 6 1.4345 -3.1304 0.4934 22 6 0.3292 -2.8635 -0.3116 23 6 -0.1238 -3.8206 -1.1969 24 6 0.5105 -5.0472 -1.2775 25 6 1.6048 -5.3196 -0.4765 26 6 2.0694 -4.3677 0.4085 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 2.5914 0.9363 2.4791 32 1 3.4613 0.1661 4.7340 33 1 4.3894 -1.3395 4.5349 34 1 1.9624 -3.2363 7.5751 35 1 1.0343 -1.7305 7.7734 36 1 1.1913 -0.3369 9.5660 37 1 2.9180 0.0446 9.9833 38 1 0.9928 -0.4652 12.5765 39 1 2.3235 -3.6777 10.6565 40 1 0.7723 -2.9604 10.0416 41 1 -0.1697 -1.9079 -0.2460 42 1 -0.9778 -3.6132 -1.8246 43 1 0.1502 -5.7949 -1.9687 44 1 2.0967 -6.2787 -0.5437 45 1 2.9242 -4.5813 1.0331 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12622148_11354868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:24:33 Heat of formation + Delta-G solvation = -23.891637 kcal Electronic energy + Delta-G solvation = -29297.653735 eV Core-core repulsion = 25056.956569 eV Total energy + Delta-G solvation = -4240.697166 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59694 -41.58053 -40.26503 -39.81524 -37.88159 -37.60290 -36.00541 -34.91215 -32.43218 -31.96348 -31.50595 -30.09463 -28.58790 -26.76751 -26.04241 -24.53230 -23.55854 -23.41530 -22.28789 -21.50672 -21.05990 -20.56022 -18.95977 -18.82577 -18.49576 -17.93419 -17.75209 -17.37932 -16.96484 -16.48636 -16.35591 -16.25983 -15.88863 -15.57197 -15.47289 -15.32009 -14.90281 -14.69286 -14.32323 -14.26372 -14.13174 -13.91421 -13.81368 -13.63091 -13.49677 -13.34732 -12.84624 -12.47744 -12.44531 -12.42817 -12.20711 -12.16172 -11.91407 -11.83295 -11.68673 -11.58681 -11.23778 -10.84540 -10.74079 -10.26846 -9.90557 -9.80609 -9.35700 -4.96482 0.01850 0.44544 0.67707 0.99363 1.13767 1.40588 1.63185 1.66050 1.78662 2.07492 2.86949 3.15457 3.32677 3.37239 3.47404 3.56587 3.58980 3.68322 3.81419 3.90047 3.93429 3.99620 4.09067 4.10130 4.12943 4.14159 4.17243 4.31488 4.35616 4.41231 4.49597 4.58848 4.63657 4.73246 4.76257 4.77274 4.80926 4.96199 4.96671 5.09146 5.15060 5.21988 5.26521 5.38411 5.53391 5.58984 5.60565 5.85831 6.03076 6.51975 6.56948 6.86665 6.88307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.042 4.042 3 Si 0.804 3.196 4 C -0.267 4.267 5 C 0.085 3.915 6 N -0.369 5.369 7 C 0.143 3.857 8 C 0.445 3.555 9 O -0.525 6.525 10 O -0.346 6.346 11 C 0.081 3.919 12 C -0.101 4.101 13 H 0.121 0.879 14 C -0.158 4.158 15 C 0.075 3.925 16 H 0.105 0.895 17 O -0.584 6.584 18 C -0.129 4.129 19 N -0.302 5.302 20 C 0.114 3.886 21 C -0.042 4.042 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.112 4.112 27 H 0.394 0.606 28 H 0.092 0.908 29 H -0.280 1.280 30 H -0.303 1.303 31 H 0.234 0.766 32 H 0.197 0.803 33 H 0.152 0.848 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 7.030 4.530 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.151 4.151 3 Si 0.709 3.291 4 C -0.279 4.279 5 C -0.059 4.059 6 N -0.151 5.151 7 C 0.022 3.978 8 C 0.287 3.713 9 O -0.413 6.413 10 O -0.262 6.262 11 C 0.007 3.993 12 C -0.119 4.119 13 H 0.139 0.861 14 C -0.196 4.196 15 C 0.016 3.984 16 H 0.122 0.878 17 O -0.393 6.393 18 C -0.167 4.167 19 N -0.123 5.123 20 C -0.051 4.051 21 C -0.044 4.044 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.131 4.131 27 H 0.244 0.756 28 H 0.109 0.891 29 H -0.207 1.207 30 H -0.230 1.230 31 H 0.250 0.750 32 H 0.214 0.786 33 H 0.170 0.830 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.176 0.824 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.661 5.764 4.271 8.555 hybrid contribution -0.227 -0.306 -0.486 0.618 sum 4.435 5.458 3.784 7.986 Atomic orbital electron populations 1.86335 1.17859 1.81528 1.50490 1.24624 0.84661 1.11012 0.94812 0.94011 0.77151 0.72799 0.85176 1.20698 1.14345 0.92233 1.00604 1.22976 0.97254 0.96949 0.88691 1.48189 1.48807 1.03975 1.14169 1.21584 0.95616 1.06740 0.73867 1.24261 0.85042 0.78225 0.83802 1.90799 1.27305 1.41043 1.82146 1.86452 1.52648 1.70556 1.16588 1.23121 0.92598 0.96858 0.86708 1.22349 1.01847 0.98238 0.89496 0.86078 1.23729 1.02317 0.97036 0.96520 1.23407 0.89268 0.95573 0.90125 0.87775 1.86491 1.38866 1.53846 1.60065 1.23126 1.01072 0.97897 0.94602 1.77693 1.20981 1.04277 1.09386 1.20881 0.98221 0.93872 0.92119 1.18084 0.97291 0.92577 0.96430 1.22078 0.95013 1.01610 0.94293 1.21449 1.00824 0.93655 0.99010 1.21610 0.95364 0.97526 0.98990 1.21352 0.97573 0.99785 0.96315 1.21328 1.00052 0.93001 0.98720 0.75590 0.89087 1.20667 1.23047 0.74972 0.78581 0.83019 0.91856 0.91704 0.90239 0.89209 0.75358 0.89299 0.90315 0.82436 0.83926 0.83659 0.84083 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.17 10.10 -148.98 -1.51 -1.67 16 2 C -0.04 -0.02 2.00 71.23 0.14 0.12 16 3 Si 0.80 -3.89 30.75 68.60 2.11 -1.78 16 4 C -0.27 -0.80 5.34 -19.95 -0.11 -0.90 16 5 C 0.09 -0.27 9.96 83.47 0.83 0.56 16 6 N -0.37 -0.58 3.40 -351.91 -1.20 -1.78 16 7 C 0.14 -0.95 7.10 85.63 0.61 -0.34 16 8 C 0.44 0.95 7.99 71.23 0.57 1.52 16 9 O -0.53 -6.60 15.45 21.96 0.34 -6.26 16 10 O -0.35 0.07 10.22 -51.47 -0.53 -0.45 16 11 C 0.08 0.07 5.31 71.98 0.38 0.45 16 12 C -0.10 0.35 4.02 -10.26 -0.04 0.31 16 13 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 14 C -0.16 0.65 7.47 31.12 0.23 0.89 16 15 C 0.07 -0.24 5.21 31.12 0.16 -0.08 16 16 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 17 O -0.58 -0.19 13.67 -148.98 -2.04 -2.23 16 18 C -0.13 0.23 7.47 31.12 0.23 0.46 16 19 N -0.30 -3.44 11.63 -48.16 -0.56 -4.00 16 20 C 0.11 1.20 6.74 42.53 0.29 1.48 16 21 C -0.04 -0.49 5.80 -20.04 -0.12 -0.60 16 22 C -0.11 -1.04 8.94 22.48 0.20 -0.84 16 23 C -0.13 -0.86 10.03 22.24 0.22 -0.64 16 24 C -0.12 -0.63 10.04 22.31 0.22 -0.41 16 25 C -0.13 -0.93 10.03 22.24 0.22 -0.71 16 26 C -0.11 -1.20 9.75 22.48 0.22 -0.98 16 27 H 0.39 -2.99 8.70 -74.05 -0.64 -3.63 16 28 H 0.09 0.39 7.84 -2.39 -0.02 0.37 16 29 H -0.28 0.19 7.11 99.48 0.71 0.89 16 30 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 31 H 0.23 -3.47 6.41 -2.91 -0.02 -3.49 16 32 H 0.20 -3.51 8.07 -2.39 -0.02 -3.52 16 33 H 0.15 -1.60 8.14 -2.39 -0.02 -1.62 16 34 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 35 H 0.06 0.18 7.84 -2.39 -0.02 0.16 16 36 H 0.08 -0.12 7.90 -2.39 -0.02 -0.14 16 37 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.40 -3.21 9.12 -74.06 -0.68 -3.89 16 39 H 0.09 -0.31 8.14 -2.39 -0.02 -0.32 16 40 H 0.08 0.11 8.10 -2.38 -0.02 0.09 16 41 H 0.16 1.29 4.52 -2.91 -0.01 1.28 16 42 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -32.81 382.22 0.65 -32.16 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: -0.24 Total: -14.28 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.27 Total: 0.29 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -1.76 Total: -5.78 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -3.73 Total: -10.61 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.11 Total: -1.78 kcal Total: -32.81 0.65 -32.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12622148_11354868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.266 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds