Wall clock time and date at job start Sat Mar 6 2021 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.46906 * 2 1 4 4 C 1.50701 * 109.47184 * 240.00065 * 2 1 3 5 5 C 1.35081 * 126.07586 * 104.01638 * 4 2 1 6 6 N 1.35042 * 107.97819 * 180.28198 * 5 4 2 7 7 C 1.46503 * 125.92985 * 179.74840 * 6 5 4 8 8 C 1.50695 * 109.47183 * 124.99941 * 7 6 5 9 9 O 1.20834 * 119.99959 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99737 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46805 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.47025 * 305.00162 * 12 11 10 14 14 C 1.53005 * 109.47421 * 65.00281 * 12 11 10 15 15 C 1.52991 * 109.47021 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47566 * 299.99443 * 15 14 12 17 17 H 1.08998 * 109.47424 * 300.00818 * 16 15 14 18 18 O 1.42894 * 109.47584 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.46855 * 60.00243 * 16 15 14 20 20 C 1.53000 * 109.47235 * 300.00265 * 19 16 15 21 21 N 1.40066 * 108.14083 * 359.72511 * 6 5 4 22 22 C 1.31624 * 108.10551 * 0.02562 * 21 6 5 23 23 C 1.48424 * 126.03516 * 179.97438 * 22 21 6 24 24 C 1.39326 * 120.12004 * 43.67926 * 23 22 21 25 25 C 1.38016 * 119.87865 * 180.02562 * 24 23 22 26 26 C 1.38323 * 120.12019 * 359.97438 * 25 24 23 27 27 C 1.38313 * 120.24048 * 0.02562 * 26 25 24 28 28 C 1.38018 * 120.12279 * 0.02562 * 27 26 25 29 29 H 0.96697 * 114.00552 * 59.99781 * 1 2 3 30 30 H 1.09001 * 109.47138 * 119.99721 * 2 1 3 31 31 H 1.48499 * 110.00118 * 298.68172 * 3 2 1 32 32 H 1.48493 * 110.00091 * 60.00210 * 3 2 1 33 33 H 1.08004 * 126.01437 * 0.02562 * 5 4 2 34 34 H 1.09005 * 109.46896 * 245.00195 * 7 6 5 35 35 H 1.09001 * 109.47254 * 5.00032 * 7 6 5 36 36 H 1.09002 * 109.47604 * 300.00179 * 11 10 8 37 37 H 1.09003 * 109.47346 * 60.00601 * 11 10 8 38 38 H 1.09004 * 109.46804 * 299.99963 * 14 12 11 39 39 H 1.08994 * 109.47031 * 59.99486 * 14 12 11 40 40 H 1.09004 * 109.46589 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.47416 * 60.00266 * 15 14 12 42 42 H 0.96702 * 113.99924 * 60.00643 * 18 16 15 43 43 H 1.08994 * 109.47188 * 180.02562 * 19 16 15 44 44 H 1.08998 * 109.46635 * 60.00092 * 19 16 15 45 45 H 1.08998 * 109.46868 * 300.00413 * 20 19 16 46 46 H 1.09001 * 109.47249 * 179.97438 * 20 19 16 47 47 H 1.07997 * 120.05734 * 0.04077 * 24 23 22 48 48 H 1.07998 * 119.94140 * 180.25856 * 25 24 23 49 49 H 1.07997 * 119.87789 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.93846 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.06453 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4458 -0.1239 -2.3332 6 7 2.7721 -1.0981 -3.2097 7 6 3.3570 -0.8988 -4.5380 8 6 4.6320 -1.6943 -4.6499 9 8 5.0128 -2.3600 -3.7161 10 8 5.3441 -1.6644 -5.7874 11 6 6.5617 -2.4545 -5.8237 12 6 7.2323 -2.2954 -7.1897 13 1 6.5224 -2.5545 -7.9753 14 6 7.6854 -0.8452 -7.3697 15 6 8.3553 -0.6860 -8.7359 16 6 9.5691 -1.6136 -8.8200 17 1 10.2793 -1.3548 -8.0347 18 8 10.1952 -1.4645 -10.0958 19 6 9.1161 -3.0639 -8.6400 20 6 8.4461 -3.2232 -7.2738 21 7 2.4548 -2.3322 -2.6281 22 6 1.9506 -2.1040 -1.4338 23 6 1.4798 -3.1331 -0.4735 24 6 2.2328 -4.2856 -0.2589 25 6 1.7901 -5.2396 0.6348 26 6 0.6015 -5.0530 1.3172 27 6 -0.1499 -3.9108 1.1079 28 6 0.2828 -2.9508 0.2157 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4679 1.2084 33 1 2.5701 0.9376 -2.4886 34 1 2.6521 -1.2331 -5.2993 35 1 3.5749 0.1592 -4.6841 36 1 7.2412 -2.1112 -5.0436 37 1 6.3189 -3.5042 -5.6579 38 1 6.8206 -0.1843 -7.3103 39 1 8.3952 -0.5862 -6.5841 40 1 8.6777 0.3473 -8.8643 41 1 7.6451 -0.9448 -9.5212 42 1 10.5082 -0.5679 -10.2780 43 1 9.9808 -3.7247 -8.6995 44 1 8.4059 -3.3227 -9.4253 45 1 9.1563 -2.9642 -6.4885 46 1 8.1229 -4.2563 -7.1457 47 1 3.1613 -4.4319 -0.7907 48 1 2.3751 -6.1314 0.8050 49 1 0.2586 -5.8023 2.0153 50 1 -1.0775 -3.7703 1.6431 51 1 -0.3049 -2.0595 0.0527 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12622148_16737258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 02:29:29 Heat of formation + Delta-G solvation = -64.626222 kcal Electronic energy + Delta-G solvation = -33378.394906 eV Core-core repulsion = 28824.856118 eV Total energy + Delta-G solvation = -4553.538788 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.59857 -41.55352 -40.08271 -39.79777 -38.01338 -37.74049 -36.58276 -34.92246 -32.49045 -32.06461 -31.83172 -31.81388 -31.46687 -29.13497 -26.75185 -25.89351 -24.35608 -23.80200 -23.49207 -22.53990 -22.07160 -21.57433 -21.05718 -20.83143 -18.93956 -18.79435 -18.21027 -17.92991 -17.80925 -17.45621 -16.86791 -16.51139 -16.49204 -16.11392 -15.87169 -15.74345 -15.54511 -15.48859 -15.04307 -14.93041 -14.75534 -14.46819 -14.35943 -14.13727 -13.96682 -13.80421 -13.69218 -13.59627 -13.35496 -13.22026 -13.11943 -12.58622 -12.55307 -12.40164 -12.15771 -12.13423 -12.00864 -11.85850 -11.73604 -11.67108 -11.61820 -11.52334 -11.10802 -10.77313 -10.70576 -10.41822 -9.88955 -9.80086 -9.39601 -4.82183 0.06681 0.46233 0.68407 1.00789 1.10513 1.39998 1.60959 1.63827 1.69592 2.04622 2.86277 3.18025 3.29525 3.41152 3.52336 3.60910 3.66410 3.71666 3.76253 3.86401 4.01769 4.02591 4.07928 4.11372 4.12924 4.14457 4.25320 4.30308 4.33724 4.34249 4.43554 4.46412 4.47005 4.51375 4.56203 4.57556 4.75709 4.80077 4.85637 4.94520 4.97406 5.03566 5.07182 5.14199 5.14464 5.16801 5.26016 5.27356 5.31828 5.44324 5.56137 5.59131 5.61002 5.83361 6.03785 6.51735 6.58186 6.64289 6.86474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.046 4.046 3 Si 0.769 3.231 4 C -0.258 4.258 5 C 0.080 3.920 6 N -0.368 5.368 7 C 0.142 3.858 8 C 0.446 3.554 9 O -0.522 6.522 10 O -0.348 6.348 11 C 0.074 3.926 12 C -0.082 4.082 13 H 0.083 0.917 14 C -0.108 4.108 15 C -0.146 4.146 16 C 0.099 3.901 17 H 0.061 0.939 18 O -0.591 6.591 19 C -0.112 4.112 20 C -0.107 4.107 21 N -0.299 5.299 22 C 0.118 3.882 23 C -0.037 4.037 24 C -0.109 4.109 25 C -0.130 4.130 26 C -0.115 4.115 27 C -0.129 4.129 28 C -0.100 4.100 29 H 0.385 0.615 30 H 0.101 0.899 31 H -0.252 1.252 32 H -0.306 1.306 33 H 0.222 0.778 34 H 0.151 0.849 35 H 0.192 0.808 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.393 0.607 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.111 0.889 48 H 0.140 0.860 49 H 0.146 0.854 50 H 0.143 0.857 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 6.320 -2.572 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.155 4.155 3 Si 0.672 3.328 4 C -0.269 4.269 5 C -0.064 4.064 6 N -0.150 5.150 7 C 0.021 3.979 8 C 0.288 3.712 9 O -0.409 6.409 10 O -0.264 6.264 11 C 0.001 3.999 12 C -0.100 4.100 13 H 0.102 0.898 14 C -0.146 4.146 15 C -0.184 4.184 16 C 0.041 3.959 17 H 0.079 0.921 18 O -0.400 6.400 19 C -0.150 4.150 20 C -0.145 4.145 21 N -0.120 5.120 22 C -0.048 4.048 23 C -0.039 4.039 24 C -0.128 4.128 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.147 4.147 28 C -0.119 4.119 29 H 0.234 0.766 30 H 0.119 0.881 31 H -0.177 1.177 32 H -0.234 1.234 33 H 0.239 0.761 34 H 0.168 0.832 35 H 0.209 0.791 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.129 0.871 48 H 0.158 0.842 49 H 0.164 0.836 50 H 0.161 0.839 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.871 5.148 -2.874 6.185 hybrid contribution -0.851 0.327 0.206 0.935 sum 1.020 5.474 -2.668 6.175 Atomic orbital electron populations 1.86523 1.18646 1.80023 1.50101 1.24524 0.83106 1.11741 0.96107 0.94053 0.90202 0.70683 0.77870 1.20592 1.14271 0.92156 0.99922 1.22896 0.98024 0.96818 0.88684 1.48162 1.48497 1.03898 1.14482 1.21543 0.90074 1.04581 0.81745 1.24128 0.86177 0.80423 0.80443 1.90786 1.69639 1.40232 1.40267 1.86440 1.36722 1.65537 1.37656 1.23208 0.82796 0.94607 0.99331 1.21219 0.96898 0.97107 0.94777 0.89827 1.21509 1.00936 0.95255 0.96853 1.22209 0.97851 1.00232 0.98071 1.21919 0.93317 0.95729 0.84952 0.92115 1.86482 1.79598 1.36819 1.37074 1.21446 1.00697 0.95469 0.97398 1.21444 0.96172 0.99809 0.97033 1.77728 1.20464 1.03887 1.09877 1.20861 0.97841 0.93667 0.92404 1.17998 0.96094 0.93169 0.96645 1.21268 0.99585 0.93562 0.98431 1.21332 0.97349 0.99455 0.96670 1.21583 0.94432 0.98014 0.99253 1.21416 1.00861 0.94004 0.98433 1.21686 0.94853 1.00113 0.95204 0.76556 0.88113 1.17738 1.23382 0.76140 0.83203 0.79052 0.90994 0.91834 0.90315 0.91259 0.90342 0.91732 0.75680 0.91443 0.91764 0.90641 0.90543 0.87118 0.84222 0.83643 0.83923 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.75 10.42 -148.98 -1.55 -2.31 16 2 C -0.05 -0.02 2.17 71.24 0.15 0.14 16 3 Si 0.77 -3.32 30.84 68.60 2.12 -1.21 16 4 C -0.26 -0.67 5.34 -19.95 -0.11 -0.77 16 5 C 0.08 -0.21 9.96 83.47 0.83 0.62 16 6 N -0.37 -0.52 3.40 -351.90 -1.20 -1.71 16 7 C 0.14 -0.93 7.10 85.63 0.61 -0.32 16 8 C 0.45 0.56 7.99 71.23 0.57 1.13 16 9 O -0.52 -5.66 15.45 21.94 0.34 -5.32 16 10 O -0.35 0.41 9.76 -51.42 -0.50 -0.09 16 11 C 0.07 -0.08 4.84 71.98 0.35 0.27 16 12 C -0.08 0.31 2.43 -10.79 -0.03 0.28 16 13 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 14 C -0.11 0.56 5.10 30.59 0.16 0.72 16 15 C -0.15 0.64 5.54 30.59 0.17 0.81 16 16 C 0.10 -0.18 3.47 30.60 0.11 -0.08 16 17 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 18 O -0.59 -0.65 13.32 -148.98 -1.98 -2.63 16 19 C -0.11 0.12 5.57 30.60 0.17 0.29 16 20 C -0.11 0.39 5.21 30.60 0.16 0.55 16 21 N -0.30 -3.17 11.67 -48.15 -0.56 -3.73 16 22 C 0.12 1.11 6.66 42.53 0.28 1.39 16 23 C -0.04 -0.38 5.74 -20.04 -0.11 -0.50 16 24 C -0.11 -1.11 9.78 22.48 0.22 -0.89 16 25 C -0.13 -0.81 10.03 22.24 0.22 -0.58 16 26 C -0.11 -0.48 10.04 22.31 0.22 -0.26 16 27 C -0.13 -0.65 10.03 22.24 0.22 -0.43 16 28 C -0.10 -0.77 9.05 22.48 0.20 -0.57 16 29 H 0.38 -1.95 8.70 -74.06 -0.64 -2.59 16 30 H 0.10 0.27 7.96 -2.39 -0.02 0.25 16 31 H -0.25 1.29 6.97 99.48 0.69 1.99 16 32 H -0.31 -1.33 7.11 99.48 0.71 -0.62 16 33 H 0.22 -2.68 6.34 -2.91 -0.02 -2.70 16 34 H 0.15 -1.53 8.14 -2.38 -0.02 -1.55 16 35 H 0.19 -3.28 8.07 -2.39 -0.02 -3.30 16 36 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 37 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 38 H 0.08 -0.45 7.82 -2.39 -0.02 -0.46 16 39 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.39 -2.71 9.08 -74.06 -0.67 -3.38 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.11 1.31 8.06 -2.91 -0.02 1.28 16 48 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 49 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 50 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 51 H 0.15 1.00 5.34 -2.91 -0.02 0.98 16 Total: 0.00 -28.09 418.25 0.72 -27.36 By element: Atomic # 1 Polarization: -11.82 SS G_CDS: -0.33 Total: -12.16 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 4.40 Total: 1.80 kcal Atomic # 7 Polarization: -3.68 SS G_CDS: -1.76 Total: -5.44 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -3.70 Total: -10.36 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.12 Total: -1.21 kcal Total: -28.09 0.72 -27.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12622148_16737258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.262 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds