Wall clock time and date at job start Sat Mar 6 2021 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86294 * 109.47250 * 2 1 4 4 C 1.86300 * 109.47281 * 239.99713 * 2 1 3 5 5 C 1.86303 * 109.46917 * 120.00225 * 2 1 3 6 6 O 1.45194 * 109.47279 * 59.99922 * 5 2 1 7 7 C 1.34231 * 117.00117 * 74.99999 * 6 5 2 8 8 O 1.20825 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99918 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.46905 * 179.97438 * 9 7 6 11 11 C 1.35039 * 125.92678 * 125.00419 * 10 9 7 12 12 C 1.35087 * 107.97749 * 180.02562 * 11 10 9 13 13 C 1.50697 * 126.07563 * 180.02562 * 12 11 10 14 14 O 1.42910 * 109.46764 * 105.24801 * 13 12 11 15 15 Si 1.86306 * 109.47226 * 345.25304 * 13 12 11 16 16 H 1.48500 * 109.46901 * 59.99749 * 15 13 12 17 17 H 1.48493 * 109.47134 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46561 * 300.00131 * 15 13 12 19 19 C 1.40842 * 107.84845 * 359.97438 * 12 11 10 20 20 C 1.48424 * 126.04000 * 179.97438 * 19 12 11 21 21 C 1.39320 * 120.12215 * 137.19223 * 20 19 12 22 22 C 1.38023 * 119.87842 * 179.97438 * 21 20 19 23 23 C 1.38320 * 120.11791 * 359.97438 * 22 21 20 24 24 C 1.38313 * 120.24332 * 0.02562 * 23 22 21 25 25 C 1.38025 * 120.12338 * 359.97438 * 24 23 22 26 26 N 1.31621 * 107.92880 * 0.22789 * 19 12 11 27 27 H 1.09004 * 109.46956 * 300.00197 * 1 2 3 28 28 H 1.09005 * 109.47099 * 60.00139 * 1 2 3 29 29 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47218 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47209 * 299.99547 * 3 2 1 32 32 H 1.09004 * 109.47303 * 60.00015 * 3 2 1 33 33 H 1.08996 * 109.47529 * 300.00602 * 4 2 1 34 34 H 1.09005 * 109.46933 * 60.00047 * 4 2 1 35 35 H 1.09002 * 109.47242 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46963 * 299.99573 * 5 2 1 37 37 H 1.09002 * 109.46988 * 180.02562 * 5 2 1 38 38 H 1.09004 * 109.46719 * 60.00168 * 9 7 6 39 39 H 1.08990 * 109.47338 * 300.00429 * 9 7 6 40 40 H 1.07995 * 126.01118 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.47468 * 225.24647 * 13 12 11 42 42 H 0.96698 * 113.99947 * 300.00150 * 14 13 12 43 43 H 1.07996 * 120.06094 * 359.95380 * 21 20 19 44 44 H 1.08001 * 119.93889 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.87637 * 179.74928 * 23 22 21 46 46 H 1.08000 * 119.93995 * 179.97438 * 24 23 22 47 47 H 1.07993 * 120.06531 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5211 6 8 1.9999 -2.2472 1.5211 7 6 2.5941 -3.1037 0.6754 8 8 3.4887 -2.7220 -0.0414 9 6 2.1453 -4.5413 0.6201 10 7 2.9430 -5.2639 -0.3739 11 6 3.6532 -6.3909 -0.1525 12 6 4.2472 -6.7441 -1.3132 13 6 5.1367 -7.9418 -1.5262 14 8 4.4193 -8.9455 -2.2476 15 14 5.6668 -8.6233 0.1247 16 1 4.4675 -9.0290 0.9009 17 1 6.5427 -9.8038 -0.0852 18 1 6.4120 -7.5803 0.8744 19 6 3.8866 -5.7948 -2.2891 20 6 4.3168 -5.7961 -3.7096 21 6 3.3992 -5.5108 -4.7183 22 6 3.8049 -5.5129 -6.0376 23 6 5.1199 -5.7970 -6.3589 24 6 6.0350 -6.0810 -5.3615 25 6 5.6402 -6.0817 -4.0389 26 7 3.1051 -4.9031 -1.7176 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5208 36 1 2.1206 -0.3644 2.4111 37 1 3.5739 -0.8779 1.5214 38 1 1.0926 -4.5827 0.3404 39 1 2.2796 -5.0018 1.5988 40 1 3.7324 -6.9172 0.7872 41 1 6.0168 -7.6441 -2.0960 42 1 3.6220 -9.2583 -1.7987 43 1 2.3723 -5.2887 -4.4684 44 1 3.0942 -5.2922 -6.8203 45 1 5.4321 -5.8016 -7.3927 46 1 7.0605 -6.3026 -5.6179 47 1 6.3556 -6.3031 -3.2608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_12622148_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:17:42 Heat of formation + Delta-G solvation = -34.093447 kcal Electronic energy + Delta-G solvation = -28808.017814 eV Core-core repulsion = 24889.117494 eV Total energy + Delta-G solvation = -3918.900320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55162 -41.39216 -39.66700 -37.77888 -37.40033 -34.88315 -32.36130 -31.91256 -31.37385 -29.84359 -29.31294 -28.50604 -28.30610 -27.60618 -25.97811 -24.14969 -23.31045 -22.16792 -21.59997 -20.93606 -18.89188 -18.77510 -17.87370 -17.78353 -17.30906 -17.01154 -16.42513 -16.12827 -15.79551 -15.59917 -15.50789 -14.97666 -14.84107 -14.44479 -14.30948 -14.21221 -14.18075 -13.97723 -13.95201 -13.86486 -13.70111 -13.43543 -13.35535 -13.27201 -13.04366 -12.97611 -12.48890 -12.48351 -12.35463 -12.23265 -12.00232 -11.73334 -11.63342 -11.55758 -10.94232 -10.77025 -10.65526 -10.46177 -10.23069 -9.73955 -9.69299 -9.23760 0.25572 0.64698 0.66333 1.03154 1.07136 1.17516 1.37557 1.47230 1.49274 1.56117 1.79011 1.82368 1.91083 1.96461 2.51562 3.04170 3.27097 3.52593 3.60258 3.61217 3.68273 3.80488 4.09750 4.11480 4.15173 4.21613 4.33533 4.44325 4.56900 4.58320 4.63840 4.65857 4.66944 4.69679 4.72085 4.83114 4.88818 4.95980 5.01098 5.09895 5.25374 5.26086 5.37890 5.40010 5.47543 5.68552 5.74197 5.74963 5.76295 5.83112 6.17747 6.60315 6.66343 6.68644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.997 3.003 3 C -0.447 4.447 4 C -0.434 4.434 5 C -0.236 4.236 6 O -0.336 6.336 7 C 0.426 3.574 8 O -0.457 6.457 9 C 0.146 3.854 10 N -0.365 5.365 11 C 0.058 3.942 12 C -0.247 4.247 13 C -0.042 4.042 14 O -0.535 6.535 15 Si 0.941 3.059 16 H -0.252 1.252 17 H -0.248 1.248 18 H -0.250 1.250 19 C 0.139 3.861 20 C -0.008 4.008 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.091 4.091 26 N -0.248 5.248 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.177 0.823 41 H 0.115 0.885 42 H 0.372 0.628 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -0.575 3.406 3.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.193 2.807 3 C -0.555 4.555 4 C -0.542 4.542 5 C -0.354 4.354 6 O -0.252 6.252 7 C 0.265 3.735 8 O -0.342 6.342 9 C 0.022 3.978 10 N -0.148 5.148 11 C -0.086 4.086 12 C -0.259 4.259 13 C -0.154 4.154 14 O -0.339 6.339 15 Si 0.762 3.238 16 H -0.175 1.175 17 H -0.172 1.172 18 H -0.174 1.174 19 C -0.028 4.028 20 C -0.010 4.010 21 C -0.110 4.110 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.111 4.111 26 N -0.068 5.068 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.194 0.806 41 H 0.132 0.868 42 H 0.219 0.781 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.616 0.472 3.631 4.002 hybrid contribution -0.039 -0.374 0.400 0.549 sum -1.655 0.098 4.031 4.358 Atomic orbital electron populations 1.26052 1.19982 1.04637 1.04603 0.79742 0.67703 0.67190 0.66036 1.26043 1.06491 1.18093 1.04843 1.26223 1.06893 1.07538 1.13539 1.28375 1.05261 0.83495 1.18318 1.86380 1.59264 1.21444 1.58100 1.23489 0.81948 0.89123 0.78897 1.90784 1.27625 1.77302 1.38468 1.21007 0.96968 0.87215 0.92578 1.47900 1.39069 1.19863 1.07950 1.22282 0.95834 0.90356 1.00103 1.20481 1.09555 1.03048 0.92795 1.24334 0.96393 0.86817 1.07825 1.86547 1.42388 1.55779 1.49217 0.85898 0.81264 0.81157 0.75432 1.17538 1.17155 1.17356 1.20606 0.96146 0.92417 0.93648 1.17672 0.93752 1.01592 0.88000 1.21154 0.99306 0.98260 0.92256 1.21095 0.96334 1.00380 0.96087 1.21255 0.93477 0.98805 0.99523 1.21072 0.99889 1.00299 0.92467 1.21105 0.94619 0.98702 0.96650 1.77818 1.20584 1.20579 0.87779 0.91102 0.90916 0.91131 0.91006 0.90597 0.91087 0.91114 0.92012 0.90685 0.87077 0.90142 0.85145 0.84262 0.80608 0.86770 0.78094 0.85928 0.85752 0.85873 0.85605 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.41 8.65 101.05 0.87 1.28 16 2 Si 1.00 -1.22 12.12 -169.99 -2.06 -3.28 16 3 C -0.45 0.45 8.65 101.05 0.87 1.32 16 4 C -0.43 -0.87 7.10 101.05 0.72 -0.16 16 5 C -0.24 0.17 5.40 101.05 0.55 0.71 16 6 O -0.34 -0.03 9.92 -39.26 -0.39 -0.42 16 7 C 0.43 0.38 6.77 36.01 0.24 0.63 16 8 O -0.46 -1.85 11.37 -18.75 -0.21 -2.06 16 9 C 0.15 -0.29 7.10 -5.19 -0.04 -0.33 16 10 N -0.37 -0.44 3.40 -62.58 -0.21 -0.66 16 11 C 0.06 0.00 9.96 -17.26 -0.17 -0.17 16 12 C -0.25 -0.38 5.35 -104.76 -0.56 -0.94 16 13 C -0.04 -0.01 2.51 36.00 0.09 0.08 16 14 O -0.54 -0.48 12.88 -35.23 -0.45 -0.93 16 15 Si 0.94 -0.94 26.06 -169.99 -4.43 -5.37 16 16 H -0.25 0.46 7.03 56.52 0.40 0.86 16 17 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 18 H -0.25 0.04 7.11 56.52 0.40 0.44 16 19 C 0.14 0.53 6.67 -82.78 -0.55 -0.02 16 20 C -0.01 -0.03 5.74 -104.89 -0.60 -0.63 16 21 C -0.09 -0.30 9.78 -39.26 -0.38 -0.69 16 22 C -0.12 -0.26 10.03 -39.63 -0.40 -0.65 16 23 C -0.11 -0.19 10.04 -39.52 -0.40 -0.58 16 24 C -0.12 -0.21 10.03 -39.63 -0.40 -0.61 16 25 C -0.09 -0.24 8.89 -39.25 -0.35 -0.59 16 26 N -0.25 -1.06 11.66 33.43 0.39 -0.67 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 0.25 6.28 -51.93 -0.33 -0.08 16 34 H 0.06 0.10 7.96 -51.93 -0.41 -0.31 16 35 H 0.07 0.27 7.43 -51.93 -0.39 -0.11 16 36 H 0.11 -0.29 7.96 -51.93 -0.41 -0.70 16 37 H 0.08 0.00 7.52 -51.93 -0.39 -0.39 16 38 H 0.13 -0.54 8.14 -51.93 -0.42 -0.96 16 39 H 0.14 -0.81 8.07 -51.93 -0.42 -1.23 16 40 H 0.18 -0.61 6.35 -52.49 -0.33 -0.94 16 41 H 0.11 0.00 5.57 -51.93 -0.29 -0.29 16 42 H 0.37 -0.91 8.70 45.56 0.40 -0.51 16 43 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 45 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 46 H 0.13 -0.04 8.06 -52.49 -0.42 -0.47 16 47 H 0.12 0.14 6.22 -52.49 -0.33 -0.18 16 LS Contribution 391.54 15.07 5.90 5.90 Total: 0.00 -9.04 391.54 -8.27 -17.31 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -6.30 Total: -8.46 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.50 Total: -1.35 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: 0.18 Total: -1.33 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: -1.06 Total: -3.41 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: -6.49 Total: -8.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -9.04 -8.27 -17.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12622148_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.786 kcal (2) G-P(sol) polarization free energy of solvation -9.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds