Wall clock time and date at job start Sat Mar 6 2021 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86294 * 109.47250 * 2 1 4 4 C 1.86300 * 109.47281 * 239.99713 * 2 1 3 5 5 C 1.86303 * 109.46917 * 120.00225 * 2 1 3 6 6 O 1.45194 * 109.47279 * 59.99922 * 5 2 1 7 7 C 1.34231 * 117.00117 * 74.99999 * 6 5 2 8 8 O 1.20825 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99918 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.46905 * 179.97438 * 9 7 6 11 11 C 1.35039 * 125.92678 * 125.00419 * 10 9 7 12 12 C 1.35087 * 107.97749 * 180.02562 * 11 10 9 13 13 C 1.50697 * 126.07563 * 180.02562 * 12 11 10 14 14 O 1.42910 * 109.46764 * 105.24801 * 13 12 11 15 15 Si 1.86306 * 109.47226 * 345.25304 * 13 12 11 16 16 H 1.48500 * 109.46901 * 59.99749 * 15 13 12 17 17 H 1.48493 * 109.47134 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46561 * 300.00131 * 15 13 12 19 19 C 1.40842 * 107.84845 * 359.97438 * 12 11 10 20 20 C 1.48424 * 126.04000 * 179.97438 * 19 12 11 21 21 C 1.39320 * 120.12215 * 137.19223 * 20 19 12 22 22 C 1.38023 * 119.87842 * 179.97438 * 21 20 19 23 23 C 1.38320 * 120.11791 * 359.97438 * 22 21 20 24 24 C 1.38313 * 120.24332 * 0.02562 * 23 22 21 25 25 C 1.38025 * 120.12338 * 359.97438 * 24 23 22 26 26 N 1.31621 * 107.92880 * 0.22789 * 19 12 11 27 27 H 1.09004 * 109.46956 * 300.00197 * 1 2 3 28 28 H 1.09005 * 109.47099 * 60.00139 * 1 2 3 29 29 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47218 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47209 * 299.99547 * 3 2 1 32 32 H 1.09004 * 109.47303 * 60.00015 * 3 2 1 33 33 H 1.08996 * 109.47529 * 300.00602 * 4 2 1 34 34 H 1.09005 * 109.46933 * 60.00047 * 4 2 1 35 35 H 1.09002 * 109.47242 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46963 * 299.99573 * 5 2 1 37 37 H 1.09002 * 109.46988 * 180.02562 * 5 2 1 38 38 H 1.09004 * 109.46719 * 60.00168 * 9 7 6 39 39 H 1.08990 * 109.47338 * 300.00429 * 9 7 6 40 40 H 1.07995 * 126.01118 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.47468 * 225.24647 * 13 12 11 42 42 H 0.96698 * 113.99947 * 300.00150 * 14 13 12 43 43 H 1.07996 * 120.06094 * 359.95380 * 21 20 19 44 44 H 1.08001 * 119.93889 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.87637 * 179.74928 * 23 22 21 46 46 H 1.08000 * 119.93995 * 179.97438 * 24 23 22 47 47 H 1.07993 * 120.06531 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5211 6 8 1.9999 -2.2472 1.5211 7 6 2.5941 -3.1037 0.6754 8 8 3.4887 -2.7220 -0.0414 9 6 2.1453 -4.5413 0.6201 10 7 2.9430 -5.2639 -0.3739 11 6 3.6532 -6.3909 -0.1525 12 6 4.2472 -6.7441 -1.3132 13 6 5.1367 -7.9418 -1.5262 14 8 4.4193 -8.9455 -2.2476 15 14 5.6668 -8.6233 0.1247 16 1 4.4675 -9.0290 0.9009 17 1 6.5427 -9.8038 -0.0852 18 1 6.4120 -7.5803 0.8744 19 6 3.8866 -5.7948 -2.2891 20 6 4.3168 -5.7961 -3.7096 21 6 3.3992 -5.5108 -4.7183 22 6 3.8049 -5.5129 -6.0376 23 6 5.1199 -5.7970 -6.3589 24 6 6.0350 -6.0810 -5.3615 25 6 5.6402 -6.0817 -4.0389 26 7 3.1051 -4.9031 -1.7176 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5208 36 1 2.1206 -0.3644 2.4111 37 1 3.5739 -0.8779 1.5214 38 1 1.0926 -4.5827 0.3404 39 1 2.2796 -5.0018 1.5988 40 1 3.7324 -6.9172 0.7872 41 1 6.0168 -7.6441 -2.0960 42 1 3.6220 -9.2583 -1.7987 43 1 2.3723 -5.2887 -4.4684 44 1 3.0942 -5.2922 -6.8203 45 1 5.4321 -5.8016 -7.3927 46 1 7.0605 -6.3026 -5.6179 47 1 6.3556 -6.3031 -3.2608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12622148_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:17:41 Heat of formation + Delta-G solvation = -29.253189 kcal Electronic energy + Delta-G solvation = -28807.807925 eV Core-core repulsion = 24889.117494 eV Total energy + Delta-G solvation = -3918.690431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59584 -41.43319 -39.80404 -37.78815 -37.44708 -34.90960 -32.42143 -32.02998 -31.48086 -29.84301 -29.32033 -28.44603 -28.39932 -27.54870 -25.99526 -24.25339 -23.45594 -22.20275 -21.61254 -21.02683 -18.89593 -18.79045 -17.87820 -17.85285 -17.34523 -17.01368 -16.46010 -16.18569 -15.79821 -15.62636 -15.58197 -14.95793 -14.82196 -14.45230 -14.33719 -14.31526 -14.18452 -14.03550 -13.95340 -13.84660 -13.69561 -13.44933 -13.40617 -13.27804 -13.10289 -12.96684 -12.52564 -12.49314 -12.40456 -12.19737 -12.09336 -11.80797 -11.69320 -11.56925 -10.91090 -10.82387 -10.73922 -10.43519 -10.22586 -9.87100 -9.82128 -9.35770 0.09729 0.47012 0.65902 1.03962 1.12670 1.24531 1.47857 1.54298 1.55109 1.62184 1.69019 1.84554 1.98244 2.03629 2.52437 2.88461 3.31533 3.61414 3.62899 3.68806 3.85382 3.99242 4.06744 4.07534 4.16228 4.21093 4.24136 4.43586 4.50897 4.54969 4.65579 4.71065 4.71647 4.74344 4.75659 4.76710 4.79315 4.83243 4.86565 4.96893 5.11176 5.26133 5.26401 5.48169 5.54922 5.56086 5.57840 5.59058 5.61751 5.81636 6.03655 6.51986 6.65696 6.83743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.454 4.454 4 C -0.453 4.453 5 C -0.249 4.249 6 O -0.332 6.332 7 C 0.423 3.577 8 O -0.497 6.497 9 C 0.137 3.863 10 N -0.366 5.366 11 C 0.069 3.931 12 C -0.262 4.262 13 C -0.049 4.049 14 O -0.554 6.554 15 Si 0.985 3.015 16 H -0.228 1.228 17 H -0.273 1.273 18 H -0.261 1.261 19 C 0.117 3.883 20 C -0.026 4.026 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.105 4.105 26 N -0.288 5.288 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.186 0.814 40 H 0.215 0.785 41 H 0.106 0.894 42 H 0.385 0.615 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -0.867 5.318 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.252 2.748 3 C -0.562 4.562 4 C -0.557 4.557 5 C -0.367 4.367 6 O -0.248 6.248 7 C 0.264 3.736 8 O -0.384 6.384 9 C 0.016 3.984 10 N -0.149 5.149 11 C -0.076 4.076 12 C -0.273 4.273 13 C -0.160 4.160 14 O -0.360 6.360 15 Si 0.806 3.194 16 H -0.150 1.150 17 H -0.198 1.198 18 H -0.185 1.185 19 C -0.049 4.049 20 C -0.027 4.027 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.124 4.124 26 N -0.108 5.108 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.232 0.768 41 H 0.124 0.876 42 H 0.234 0.766 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.401 0.169 5.511 6.014 hybrid contribution 0.208 -0.264 -0.241 0.414 sum -2.194 -0.095 5.269 5.708 Atomic orbital electron populations 1.26096 1.19831 1.04692 1.05193 0.78801 0.66982 0.65922 0.63145 1.26109 1.06275 1.18313 1.05490 1.26587 1.05346 1.07231 1.16527 1.28552 1.04875 0.83473 1.19790 1.86386 1.59016 1.21689 1.57682 1.24118 0.81217 0.90234 0.78015 1.90786 1.29545 1.78124 1.39969 1.21547 0.97508 0.85439 0.93941 1.48152 1.39107 1.20261 1.07381 1.22836 0.94182 0.89684 1.00886 1.20696 1.10406 1.03300 0.92909 1.24560 0.95850 0.86463 1.09090 1.86505 1.43253 1.55950 1.50299 0.85273 0.81114 0.79177 0.73787 1.15024 1.19807 1.18510 1.20831 0.96722 0.93270 0.94086 1.17936 0.94350 1.01887 0.88570 1.21253 0.99217 0.99398 0.93065 1.21356 0.97168 1.00031 0.95972 1.21570 0.93184 0.98261 1.00679 1.21399 1.01025 0.99609 0.92139 1.21317 0.94521 0.99061 0.97513 1.77736 1.21687 1.21663 0.89748 0.89820 0.91015 0.91370 0.91478 0.90687 0.89697 0.92955 0.92474 0.93116 0.84581 0.91095 0.82956 0.79696 0.76831 0.87598 0.76601 0.86590 0.84137 0.83644 0.83511 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.09 8.65 113.37 0.98 2.07 16 2 Si 1.06 -2.15 12.12 68.60 0.83 -1.32 16 3 C -0.45 0.97 8.65 113.37 0.98 1.95 16 4 C -0.45 -3.14 7.10 113.37 0.81 -2.33 16 5 C -0.25 0.43 5.40 113.37 0.61 1.04 16 6 O -0.33 0.12 9.92 -51.43 -0.51 -0.39 16 7 C 0.42 0.92 6.77 71.24 0.48 1.40 16 8 O -0.50 -5.01 11.37 21.97 0.25 -4.76 16 9 C 0.14 -0.68 7.10 85.63 0.61 -0.07 16 10 N -0.37 -0.97 3.40 -351.91 -1.20 -2.16 16 11 C 0.07 -0.05 9.96 83.47 0.83 0.78 16 12 C -0.26 -1.03 5.35 -19.95 -0.11 -1.14 16 13 C -0.05 -0.06 2.51 71.23 0.18 0.12 16 14 O -0.55 -1.48 12.88 -148.98 -1.92 -3.40 16 15 Si 0.99 -2.73 26.06 68.60 1.79 -0.94 16 16 H -0.23 1.52 7.03 99.48 0.70 2.22 16 17 H -0.27 -0.34 7.11 99.48 0.71 0.36 16 18 H -0.26 0.28 7.11 99.48 0.71 0.99 16 19 C 0.12 1.16 6.67 42.53 0.28 1.45 16 20 C -0.03 -0.26 5.74 -20.04 -0.12 -0.38 16 21 C -0.11 -1.05 9.78 22.48 0.22 -0.83 16 22 C -0.13 -0.76 10.03 22.24 0.22 -0.53 16 23 C -0.12 -0.49 10.04 22.31 0.22 -0.27 16 24 C -0.12 -0.58 10.03 22.24 0.22 -0.35 16 25 C -0.10 -0.79 8.89 22.48 0.20 -0.59 16 26 N -0.29 -3.11 11.66 -48.16 -0.56 -3.67 16 27 H 0.08 -0.38 7.96 -2.38 -0.02 -0.40 16 28 H 0.07 -0.14 7.96 -2.38 -0.02 -0.15 16 29 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.07 -0.13 7.96 -2.39 -0.02 -0.14 16 32 H 0.08 -0.39 7.96 -2.38 -0.02 -0.41 16 33 H 0.05 0.54 6.28 -2.39 -0.02 0.53 16 34 H 0.06 0.36 7.96 -2.38 -0.02 0.34 16 35 H 0.05 0.57 7.43 -2.39 -0.02 0.55 16 36 H 0.14 -0.95 7.96 -2.38 -0.02 -0.96 16 37 H 0.07 0.05 7.52 -2.39 -0.02 0.03 16 38 H 0.15 -1.44 8.14 -2.38 -0.02 -1.46 16 39 H 0.19 -2.72 8.07 -2.39 -0.02 -2.74 16 40 H 0.22 -2.07 6.35 -2.91 -0.02 -2.09 16 41 H 0.11 0.20 5.57 -2.39 -0.01 0.18 16 42 H 0.39 -1.75 8.70 -74.06 -0.64 -2.40 16 43 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.14 0.22 8.06 -2.91 -0.02 0.19 16 45 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 46 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 47 H 0.13 0.61 6.22 -2.91 -0.02 0.60 16 Total: 0.00 -24.87 391.54 6.40 -18.48 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.08 Total: -4.15 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 6.63 Total: 2.32 kcal Atomic # 7 Polarization: -4.08 SS G_CDS: -1.76 Total: -5.84 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -2.18 Total: -8.55 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.62 Total: -2.26 kcal Total: -24.87 6.40 -18.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12622148_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.774 kcal (2) G-P(sol) polarization free energy of solvation -24.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds