Wall clock time and date at job start Sat Mar 6 2021 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35884 * 117.00370 * 2 1 4 4 C 1.38815 * 119.93698 * 180.02562 * 3 2 1 5 5 C 1.37927 * 120.06594 * 180.02562 * 4 3 2 6 6 C 1.39358 * 119.93410 * 359.97215 * 5 4 3 7 7 C 1.48398 * 120.06611 * 179.97438 * 6 5 4 8 8 N 1.31625 * 126.04080 * 317.21421 * 7 6 5 9 9 N 1.40067 * 108.10970 * 179.97438 * 8 7 6 10 10 C 1.46505 * 125.92793 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46913 * 305.02199 * 10 9 8 12 12 O 1.20819 * 120.00081 * 0.02562 * 11 10 9 13 13 O 1.34235 * 119.99609 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99639 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46978 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46962 * 304.99569 * 15 14 13 17 17 C 1.53006 * 109.47368 * 64.99494 * 15 14 13 18 18 C 1.52994 * 109.47016 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46956 * 299.99809 * 18 17 15 20 20 H 1.08995 * 109.47174 * 299.99746 * 19 18 17 21 21 O 1.42904 * 109.47085 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47237 * 60.00428 * 19 18 17 23 23 C 1.52999 * 109.47149 * 300.00043 * 22 19 18 24 24 C 1.35029 * 108.14373 * 0.22242 * 9 8 7 25 25 C 1.35092 * 107.97846 * 359.63415 * 24 9 8 26 26 C 1.50700 * 126.07645 * 180.17359 * 25 24 9 27 27 O 1.42897 * 109.47262 * 105.23075 * 26 25 24 28 28 Si 1.86301 * 109.47106 * 345.22913 * 26 25 24 29 29 C 1.39356 * 119.87147 * 0.25484 * 6 5 4 30 30 C 1.37932 * 119.93403 * 359.49110 * 29 6 5 31 31 H 1.09006 * 109.46627 * 300.00248 * 1 2 3 32 32 H 1.09000 * 109.47022 * 60.00071 * 1 2 3 33 33 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 34 34 H 1.07997 * 119.97231 * 359.97438 * 4 3 2 35 35 H 1.07991 * 120.03609 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47377 * 185.02368 * 10 9 8 37 37 H 1.09003 * 109.47440 * 65.02170 * 10 9 8 38 38 H 1.08991 * 109.47578 * 59.99542 * 14 13 11 39 39 H 1.09004 * 109.46627 * 299.99419 * 14 13 11 40 40 H 1.09000 * 109.46873 * 300.00320 * 17 15 14 41 41 H 1.08994 * 109.47072 * 60.00082 * 17 15 14 42 42 H 1.09000 * 109.47230 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47680 * 59.99439 * 18 17 15 44 44 H 0.96706 * 113.99542 * 60.00069 * 21 19 18 45 45 H 1.09000 * 109.47008 * 179.97438 * 22 19 18 46 46 H 1.09004 * 109.47101 * 59.99852 * 22 19 18 47 47 H 1.09004 * 109.46962 * 299.99894 * 23 22 19 48 48 H 1.08990 * 109.47507 * 180.02562 * 23 22 19 49 49 H 1.08004 * 126.01286 * 179.73739 * 24 9 8 50 50 H 1.09000 * 109.46788 * 225.23352 * 26 25 24 51 51 H 0.96699 * 113.99430 * 299.99968 * 27 26 25 52 52 H 1.48494 * 110.00057 * 180.02562 * 28 26 25 53 53 H 1.48509 * 109.99895 * 301.32068 * 28 26 25 54 54 H 1.07999 * 120.03249 * 179.72267 * 29 6 5 55 55 H 1.08000 * 119.96591 * 180.22863 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 3.4323 1.2817 -0.0005 5 6 4.0613 2.5092 0.0000 6 6 3.3037 3.6789 0.0005 7 6 3.9774 5.0011 0.0016 8 7 5.0247 5.3360 0.7252 9 7 5.3482 6.6671 0.4329 10 6 6.4499 7.4330 1.0210 11 6 6.3345 7.4064 2.5233 12 8 5.4255 6.8086 3.0488 13 8 7.2415 8.0469 3.2776 14 6 7.0681 7.9782 4.7176 15 6 8.1892 8.7608 5.4042 16 1 9.1547 8.3860 5.0643 17 6 8.0653 10.2445 5.0519 18 6 9.1868 11.0269 5.7380 19 6 9.0772 10.8518 7.2540 20 1 8.1119 11.2268 7.5942 21 8 10.1244 11.5831 7.8950 22 6 9.2011 9.3682 7.6064 23 6 8.0796 8.5856 6.9202 24 6 4.4651 7.1235 -0.4810 25 6 3.6096 6.1192 -0.7719 26 6 2.4627 6.1851 -1.7473 27 8 2.8081 5.4736 -2.9374 28 14 2.1072 7.9647 -2.1686 29 6 1.9122 3.6044 0.0058 30 6 1.2887 2.3741 0.0000 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 4.0190 0.3750 -0.0005 35 1 5.1399 2.5639 0.0000 36 1 6.4028 8.4644 0.6712 37 1 7.4003 6.9910 0.7217 38 1 7.1029 6.9371 5.0385 39 1 6.1045 8.4099 4.9884 40 1 8.1438 10.3693 3.9719 41 1 7.0999 10.6193 5.3917 42 1 9.0984 12.0840 5.4874 43 1 10.1522 10.6521 5.3979 44 1 10.1074 12.5332 7.7155 45 1 9.1234 9.2435 8.6865 46 1 10.1665 8.9933 7.2662 47 1 7.1142 8.9605 7.2604 48 1 8.1676 7.5288 7.1715 49 1 4.4469 8.1162 -0.9059 50 1 1.5777 5.7343 -1.2983 51 1 3.5885 5.8209 -3.3907 52 1 0.9777 8.0432 -3.1293 53 1 1.7778 8.7227 -0.9348 54 1 1.3225 4.5092 0.0107 55 1 0.2102 2.3158 0.0004 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12622150_16737258.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:49:58 Heat of formation + Delta-G solvation = -101.365555 kcal Electronic energy + Delta-G solvation = -37602.206444 eV Core-core repulsion = 32572.854708 eV Total energy + Delta-G solvation = -5029.351736 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.192 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.57522 -41.57128 -41.01663 -40.06886 -38.53163 -37.92377 -37.59302 -36.58788 -34.73481 -32.38081 -32.23829 -31.88498 -31.83818 -31.18738 -29.19704 -28.08734 -26.74557 -25.87693 -24.10958 -23.78261 -23.68399 -22.51979 -22.07022 -21.55726 -21.09476 -20.84138 -19.23556 -18.91193 -18.67854 -18.21432 -17.89310 -17.54319 -17.20076 -17.14558 -16.71692 -16.50204 -16.43347 -16.04415 -15.88652 -15.59809 -15.49240 -15.34205 -15.08482 -14.88306 -14.78713 -14.53227 -14.46710 -14.32356 -13.98013 -13.95461 -13.78634 -13.64377 -13.33731 -13.22833 -13.12826 -13.09843 -12.83707 -12.59071 -12.44282 -12.23811 -12.16149 -12.15355 -11.98802 -11.80823 -11.78666 -11.69970 -11.64454 -11.53509 -11.11658 -10.71841 -10.57933 -10.23325 -10.08743 -9.70053 -9.02043 -4.99831 0.04296 0.27560 0.67829 1.01362 1.16850 1.39268 1.59560 1.69912 1.75589 2.05123 2.28782 2.71762 3.17372 3.30413 3.41886 3.59900 3.62036 3.69749 3.70888 3.75150 3.77983 3.83824 3.92279 4.01552 4.12275 4.13937 4.16756 4.17143 4.24576 4.28302 4.32561 4.33345 4.33644 4.38289 4.45134 4.46135 4.46810 4.54700 4.56080 4.67533 4.72211 4.79376 4.82758 4.93633 4.94926 5.00223 5.02822 5.06463 5.13426 5.16148 5.20572 5.25929 5.31113 5.43593 5.44698 5.47889 5.63578 5.87910 6.33529 6.54177 6.59187 6.85834 6.92726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.124 3.876 4 C -0.162 4.162 5 C -0.059 4.059 6 C -0.061 4.061 7 C 0.122 3.878 8 N -0.299 5.299 9 N -0.368 5.368 10 C 0.143 3.857 11 C 0.444 3.556 12 O -0.527 6.527 13 O -0.346 6.346 14 C 0.074 3.926 15 C -0.081 4.081 16 H 0.086 0.914 17 C -0.108 4.108 18 C -0.145 4.145 19 C 0.099 3.901 20 H 0.059 0.941 21 O -0.591 6.591 22 C -0.112 4.112 23 C -0.108 4.108 24 C 0.086 3.914 25 C -0.268 4.268 26 C -0.043 4.043 27 O -0.557 6.557 28 Si 0.799 3.201 29 C -0.060 4.060 30 C -0.208 4.208 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.196 0.804 37 H 0.156 0.844 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.393 0.607 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.232 0.768 50 H 0.094 0.906 51 H 0.392 0.608 52 H -0.302 1.302 53 H -0.284 1.284 54 H 0.133 0.867 55 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 7.676 -3.695 8.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.078 3.922 4 C -0.180 4.180 5 C -0.078 4.078 6 C -0.063 4.063 7 C -0.044 4.044 8 N -0.120 5.120 9 N -0.151 5.151 10 C 0.022 3.978 11 C 0.286 3.714 12 O -0.415 6.415 13 O -0.262 6.262 14 C 0.000 4.000 15 C -0.099 4.099 16 H 0.104 0.896 17 C -0.146 4.146 18 C -0.183 4.183 19 C 0.041 3.959 20 H 0.077 0.923 21 O -0.399 6.399 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.058 4.058 25 C -0.280 4.280 26 C -0.152 4.152 27 O -0.365 6.365 28 Si 0.704 3.296 29 C -0.080 4.080 30 C -0.227 4.227 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.213 0.787 37 H 0.173 0.827 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.243 0.757 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.248 0.752 50 H 0.111 0.889 51 H 0.242 0.758 52 H -0.230 1.230 53 H -0.211 1.211 54 H 0.151 0.849 55 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.026 6.740 -2.150 7.359 hybrid contribution -1.286 -0.107 0.164 1.301 sum 0.739 6.633 -1.986 6.964 Atomic orbital electron populations 1.23364 0.76385 1.05679 1.02302 1.86056 1.23519 1.26764 1.88396 1.19281 0.92610 0.84700 0.95639 1.20538 0.91793 0.98876 1.06797 1.21046 1.00099 0.90584 0.96115 1.17827 0.92814 0.89712 1.05984 1.20691 0.94224 0.94295 0.95189 1.77721 1.17704 0.94198 1.22401 1.48170 1.25311 1.08766 1.32859 1.21599 0.90506 1.01154 0.84580 1.24296 0.79365 0.75424 0.92304 1.90792 1.34577 1.40936 1.75150 1.86442 1.50841 1.67965 1.20962 1.23190 1.00174 1.01094 0.75506 1.21213 0.98035 0.96007 0.94671 0.89607 1.21510 0.98709 0.92906 1.01431 1.22208 0.99676 1.01432 0.94998 1.21919 0.89929 0.92315 0.91779 0.92254 1.86485 1.53526 1.25307 1.74613 1.21442 0.99345 0.93358 1.00839 1.21443 0.99134 1.01012 0.92924 1.22932 0.89422 1.00897 0.92599 1.20674 1.05158 0.93930 1.08193 1.24718 0.95437 1.10084 0.84990 1.86485 1.52096 1.60295 1.37596 0.94072 0.84967 0.72358 0.78173 1.21019 0.93061 0.97748 0.96136 1.21359 1.01223 0.91496 1.08594 0.91735 0.91586 0.86325 0.83987 0.84899 0.78742 0.82696 0.91910 0.91323 0.90162 0.91482 0.90315 0.91562 0.75679 0.91493 0.91631 0.90840 0.90566 0.75195 0.88892 0.75838 1.22997 1.21079 0.84936 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.33 -2.57 10.49 -92.24 -0.97 -3.54 16 3 C 0.12 1.11 6.69 22.55 0.15 1.26 16 4 C -0.16 -1.46 9.97 22.33 0.22 -1.24 16 5 C -0.06 -0.58 9.77 22.47 0.22 -0.36 16 6 C -0.06 -0.63 5.74 -20.03 -0.11 -0.75 16 7 C 0.12 1.11 6.66 42.52 0.28 1.40 16 8 N -0.30 -2.99 11.67 -48.17 -0.56 -3.55 16 9 N -0.37 -0.19 3.40 -351.89 -1.20 -1.39 16 10 C 0.14 -1.08 7.10 85.63 0.61 -0.47 16 11 C 0.44 0.61 7.99 71.24 0.57 1.18 16 12 O -0.53 -6.23 15.45 21.99 0.34 -5.89 16 13 O -0.35 0.39 9.76 -51.47 -0.50 -0.11 16 14 C 0.07 -0.04 4.84 71.98 0.35 0.31 16 15 C -0.08 0.28 2.43 -10.79 -0.03 0.26 16 16 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 17 C -0.11 0.54 5.10 30.59 0.16 0.70 16 18 C -0.15 0.64 5.55 30.59 0.17 0.81 16 19 C 0.10 -0.17 3.47 30.60 0.11 -0.06 16 20 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 21 O -0.59 -0.69 13.32 -148.98 -1.98 -2.67 16 22 C -0.11 0.09 5.57 30.59 0.17 0.26 16 23 C -0.11 0.34 5.21 30.59 0.16 0.50 16 24 C 0.09 -0.33 9.96 83.48 0.83 0.50 16 25 C -0.27 -0.63 5.35 -19.95 -0.11 -0.73 16 26 C -0.04 -0.03 2.52 71.24 0.18 0.15 16 27 O -0.56 -0.96 12.88 -148.98 -1.92 -2.88 16 28 Si 0.80 -3.58 30.74 68.60 2.11 -1.47 16 29 C -0.06 -0.50 8.87 22.47 0.20 -0.30 16 30 C -0.21 -1.42 9.02 22.34 0.20 -1.22 16 31 H 0.06 -0.13 7.65 -2.38 -0.02 -0.15 16 32 H 0.07 -0.14 7.66 -2.39 -0.02 -0.16 16 33 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.13 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.20 -3.61 8.07 -2.39 -0.02 -3.63 16 37 H 0.16 -1.84 8.14 -2.39 -0.02 -1.86 16 38 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 39 H 0.07 0.03 8.13 -2.38 -0.02 0.01 16 40 H 0.08 -0.46 7.82 -2.39 -0.02 -0.48 16 41 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.39 -2.68 9.08 -74.05 -0.67 -3.35 16 45 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 47 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 48 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.23 -3.51 6.40 -2.91 -0.02 -3.52 16 50 H 0.09 0.32 5.56 -2.39 -0.01 0.30 16 51 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 52 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 53 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 54 H 0.13 0.74 6.23 -2.91 -0.02 0.72 16 55 H 0.15 0.25 6.28 -2.91 -0.02 0.24 16 Total: 0.00 -34.24 448.95 0.41 -33.84 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.35 Total: -15.65 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.44 Total: 3.31 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -1.76 Total: -4.94 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -5.03 Total: -15.09 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.11 Total: -1.47 kcal Total: -34.24 0.41 -33.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12622150_16737258.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.530 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds