Wall clock time and date at job start Sat Mar 6 2021 04:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.47138 * 2 1 4 4 C 1.50703 * 109.46743 * 119.99545 * 2 1 3 5 5 C 1.34529 * 120.20472 * 249.97554 * 4 2 1 6 6 O 1.33724 * 122.85960 * 180.02562 * 5 4 2 7 7 C 1.34881 * 122.40409 * 359.96187 * 6 5 4 8 8 C 1.38936 * 120.98229 * 180.02562 * 7 6 5 9 9 C 1.50701 * 120.04340 * 0.02562 * 8 7 6 10 10 O 1.45197 * 109.47562 * 179.97438 * 9 8 7 11 11 C 1.34227 * 116.99997 * 179.97438 * 10 9 8 12 12 O 1.20821 * 120.00524 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.50701 * 112.90832 * 311.25230 * 13 11 10 15 15 C 1.38230 * 120.00408 * 102.73920 * 14 13 11 16 16 C 1.38237 * 119.99994 * 179.76735 * 15 14 13 17 17 C 1.38231 * 119.99726 * 0.50743 * 16 15 14 18 18 C 1.38232 * 120.00286 * 359.74496 * 17 16 15 19 19 C 1.38231 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.53782 * 113.61392 * 179.97438 * 13 11 10 21 21 C 1.53782 * 87.08139 * 270.88197 * 20 13 11 22 22 H 1.09001 * 113.61596 * 89.11524 * 21 20 13 23 23 F 1.39899 * 113.61437 * 220.01750 * 21 20 13 24 24 C 1.53780 * 113.61747 * 82.50014 * 13 11 10 25 25 C 1.37871 * 119.91946 * 180.27092 * 8 7 6 26 26 C 1.38793 * 120.70154 * 359.53961 * 25 8 7 27 27 Br 1.89097 * 119.86092 * 180.21089 * 26 25 8 28 28 C 1.37889 * 120.27432 * 0.44447 * 26 25 8 29 29 C 1.39347 * 119.52553 * 359.78922 * 28 26 25 30 30 C 1.42008 * 120.19716 * 70.00176 * 4 2 1 31 31 O 1.21910 * 121.41060 * 359.97438 * 30 4 2 32 32 H 0.96699 * 113.99559 * 300.00168 * 1 2 3 33 33 H 1.09001 * 109.47173 * 239.99748 * 2 1 3 34 34 H 1.48499 * 109.99880 * 178.67915 * 3 2 1 35 35 H 1.48491 * 110.00000 * 299.99921 * 3 2 1 36 36 H 1.08000 * 118.57011 * 0.02749 * 5 4 2 37 37 H 1.09004 * 109.47124 * 59.98910 * 9 8 7 38 38 H 1.09004 * 109.46619 * 299.99437 * 9 8 7 39 39 H 1.07998 * 119.99819 * 0.02562 * 15 14 13 40 40 H 1.07997 * 119.99778 * 180.23312 * 16 15 14 41 41 H 1.08004 * 120.00130 * 179.72896 * 17 16 15 42 42 H 1.08007 * 120.00034 * 179.97438 * 18 17 16 43 43 H 1.08001 * 120.00332 * 179.97438 * 19 18 17 44 44 H 1.09001 * 113.61456 * 156.33623 * 20 13 11 45 45 H 1.09000 * 113.61460 * 25.43237 * 20 13 11 46 46 H 1.09002 * 113.61575 * 334.57072 * 24 13 11 47 47 H 1.08995 * 113.61809 * 203.66571 * 24 13 11 48 48 H 1.08007 * 119.64849 * 179.72275 * 25 8 7 49 49 H 1.07998 * 120.23343 * 179.77303 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.5322 -0.0170 2.2144 6 8 2.9979 -0.5927 3.3279 7 6 2.8994 -1.9193 3.5512 8 6 3.3932 -2.4865 4.7194 9 6 4.0502 -1.6177 5.7609 10 8 4.4775 -2.4406 6.8782 11 6 5.0859 -1.8150 7.8981 12 8 5.2562 -0.6195 7.8584 13 6 5.5576 -2.6039 9.0923 14 6 4.5032 -3.5341 9.6346 15 6 4.5684 -4.8875 9.3611 16 6 3.6038 -5.7413 9.8625 17 6 2.5682 -5.2401 10.6288 18 6 2.5000 -3.8860 10.8980 19 6 3.4672 -3.0328 10.4005 20 6 6.2339 -1.7424 10.1718 21 6 7.5559 -1.9827 9.4239 22 1 7.7611 -1.2422 8.6508 23 9 8.6473 -2.2019 10.2713 24 6 6.9249 -3.2768 8.8852 25 6 3.2859 -3.8459 4.9226 26 6 2.6795 -4.6584 3.9747 27 35 2.5398 -6.5192 4.2804 28 6 2.1828 -4.1149 2.8088 29 6 2.2899 -2.7428 2.5905 30 6 1.7736 -2.1158 1.3584 31 8 1.2342 -2.7765 0.4873 32 1 -0.3932 0.4417 0.7651 33 1 1.7924 -0.5139 -0.8900 34 1 3.5346 1.7702 0.0322 35 1 1.5616 2.4678 -1.2084 36 1 2.6434 1.0512 2.1000 37 1 3.3388 -0.8700 6.1117 38 1 4.9157 -1.1191 5.3245 39 1 5.3753 -5.2784 8.7590 40 1 3.6569 -6.7992 9.6520 41 1 1.8121 -5.9065 11.0170 42 1 1.6906 -3.4944 11.4964 43 1 3.4138 -1.9748 10.6105 44 1 6.2075 -2.1882 11.1662 45 1 5.9113 -0.7012 10.1649 46 1 7.1603 -3.4745 7.8395 47 1 7.0875 -4.1422 9.5276 48 1 3.6752 -4.2829 5.8303 49 1 1.7143 -4.7483 2.0700 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12904926_484008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:11:44 Heat of formation + Delta-G solvation = -103.401995 kcal Electronic energy + Delta-G solvation = -41420.290688 eV Core-core repulsion = 35821.676403 eV Total energy + Delta-G solvation = -5598.614286 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 489.040 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.63656 -43.35442 -42.39390 -40.48348 -40.17612 -39.80975 -38.65565 -37.87299 -37.41415 -34.64420 -33.69430 -33.16203 -32.10668 -31.84140 -30.74453 -28.73799 -27.48172 -27.21209 -26.97414 -25.81380 -24.45837 -23.75544 -23.20237 -22.61819 -22.38999 -20.98121 -20.47538 -19.53546 -18.99458 -18.79889 -18.17572 -17.93172 -17.71821 -17.55607 -17.43060 -17.13907 -16.79051 -16.56197 -16.39651 -16.23261 -16.20208 -16.05459 -15.53617 -15.51057 -15.47699 -15.30492 -15.26019 -14.94056 -14.53307 -14.29621 -14.21229 -14.13838 -14.06191 -13.87427 -13.69608 -13.55861 -13.41896 -13.11472 -12.81666 -12.65155 -12.43560 -12.33337 -12.30084 -12.09612 -11.97622 -11.83963 -11.78991 -11.52508 -11.44237 -11.37949 -11.28192 -10.70747 -10.45264 -10.41830 -9.81261 -9.69861 -9.59436 -5.13790 -0.86232 -0.71284 0.03153 0.32054 0.33168 0.50745 0.91505 0.96336 1.16110 1.24712 1.39197 1.58983 1.97215 2.26646 2.65444 2.76622 2.84568 3.01168 3.09583 3.17925 3.28618 3.31347 3.40833 3.43784 3.53715 3.65019 3.71599 3.81988 3.86124 3.94503 4.05825 4.10090 4.11501 4.12210 4.18308 4.26736 4.29250 4.32803 4.53158 4.54914 4.56909 4.59582 4.62666 4.63155 4.66443 4.69507 4.77767 4.80583 5.00896 5.02595 5.10377 5.15728 5.23183 5.56846 5.58627 5.65850 5.74002 6.08226 6.31207 6.48178 6.76217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.063 4.063 3 Si 0.803 3.197 4 C -0.341 4.341 5 C 0.179 3.821 6 O -0.200 6.200 7 C 0.168 3.832 8 C -0.096 4.096 9 C 0.115 3.885 10 O -0.343 6.343 11 C 0.499 3.501 12 O -0.511 6.511 13 C -0.033 4.033 14 C -0.078 4.078 15 C -0.104 4.104 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.131 4.131 21 C 0.057 3.943 22 H 0.118 0.882 23 F -0.215 7.215 24 C -0.132 4.132 25 C -0.007 4.007 26 C -0.120 4.120 27 Br -0.025 7.025 28 C -0.010 4.010 29 C -0.226 4.226 30 C 0.423 3.577 31 O -0.497 6.497 32 H 0.395 0.605 33 H 0.089 0.911 34 H -0.258 1.258 35 H -0.297 1.297 36 H 0.247 0.753 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.173 0.827 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 3.630 6.134 7.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.704 3.296 4 C -0.343 4.343 5 C 0.114 3.886 6 O -0.103 6.103 7 C 0.122 3.878 8 C -0.098 4.098 9 C 0.042 3.958 10 O -0.259 6.259 11 C 0.342 3.658 12 O -0.399 6.399 13 C -0.035 4.035 14 C -0.079 4.079 15 C -0.122 4.122 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.137 4.137 20 C -0.168 4.168 21 C 0.022 3.978 22 H 0.136 0.864 23 F -0.196 7.196 24 C -0.169 4.169 25 C -0.027 4.027 26 C -0.200 4.200 27 Br 0.061 6.939 28 C -0.030 4.030 29 C -0.228 4.228 30 C 0.310 3.690 31 O -0.380 6.380 32 H 0.244 0.756 33 H 0.107 0.893 34 H -0.184 1.184 35 H -0.225 1.225 36 H 0.262 0.738 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.114 0.886 46 H 0.124 0.876 47 H 0.143 0.857 48 H 0.190 0.810 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.720 3.322 4.987 6.234 hybrid contribution -0.396 -0.587 -0.932 1.170 sum 1.324 2.735 4.055 5.067 Atomic orbital electron populations 1.86554 1.17631 1.82283 1.50132 1.25216 0.85259 1.11609 0.94903 0.94448 0.77917 0.70881 0.86359 1.21962 1.13611 0.96016 1.02742 1.24422 0.85330 0.98702 0.80189 1.83169 1.68136 1.20356 1.38596 1.18823 0.95167 0.80667 0.93178 1.18813 1.03750 0.93913 0.93323 1.21675 1.00624 0.90727 0.82768 1.86407 1.69264 1.42138 1.28099 1.22857 0.73795 0.86367 0.82807 1.90717 1.53290 1.16317 1.79542 1.20099 0.95051 0.96608 0.91709 1.19105 0.95419 0.93573 0.99761 1.21220 0.99554 0.92165 0.99225 1.21425 0.94430 1.00793 0.97506 1.21504 0.98698 0.95786 0.98094 1.21361 0.99135 0.93885 1.00112 1.21134 0.94324 1.00330 0.97870 1.23686 0.92933 1.01906 0.98278 1.23280 0.82386 0.99644 0.92533 0.86431 1.92807 1.57682 1.95875 1.73209 1.23766 0.89622 0.98237 1.05321 1.21200 0.92179 0.91019 0.98284 1.21849 1.07102 0.92931 0.98076 1.96840 1.97473 1.03328 1.96244 1.21114 0.93112 0.93380 0.95361 1.20731 1.08266 0.95326 0.98522 1.18798 0.76401 0.89319 0.84509 1.90750 1.37316 1.67704 1.42259 0.75556 0.89338 1.18360 1.22490 0.73759 0.87673 0.87432 0.84077 0.84364 0.84800 0.84812 0.85726 0.86528 0.88584 0.87636 0.85701 0.80991 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.73 12.88 -148.98 -1.92 -3.64 16 2 C -0.06 -0.03 2.46 71.24 0.17 0.15 16 3 Si 0.80 -5.96 29.86 68.60 2.05 -3.91 16 4 C -0.34 0.13 5.32 -19.78 -0.11 0.02 16 5 C 0.18 -1.52 9.99 66.97 0.67 -0.85 16 6 O -0.20 1.29 9.21 -2.79 -0.03 1.26 16 7 C 0.17 -0.30 6.74 22.98 0.15 -0.14 16 8 C -0.10 0.32 5.89 -19.78 -0.12 0.21 16 9 C 0.12 -0.61 5.38 71.24 0.38 -0.23 16 10 O -0.34 1.22 8.51 -51.39 -0.44 0.78 16 11 C 0.50 -0.93 6.75 71.24 0.48 -0.45 16 12 O -0.51 -1.09 15.49 21.98 0.34 -0.75 16 13 C -0.03 0.14 1.03 -53.15 -0.05 0.08 16 14 C -0.08 0.25 4.69 -19.87 -0.09 0.16 16 15 C -0.10 0.44 9.02 22.27 0.20 0.64 16 16 C -0.12 0.45 10.05 22.27 0.22 0.67 16 17 C -0.12 0.34 10.05 22.27 0.22 0.56 16 18 C -0.13 0.29 10.05 22.27 0.22 0.52 16 19 C -0.12 0.25 9.39 22.27 0.21 0.46 16 20 C -0.13 0.44 6.56 31.12 0.20 0.65 16 21 C 0.06 -0.15 5.32 31.10 0.17 0.02 16 22 H 0.12 -0.40 8.06 -2.39 -0.02 -0.42 16 23 F -0.22 -0.65 17.41 44.97 0.78 0.14 16 24 C -0.13 0.80 6.09 31.10 0.19 0.99 16 25 C -0.01 0.02 9.10 22.32 0.20 0.22 16 26 C -0.12 -0.11 6.22 22.32 0.14 0.03 16 27 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.71 16 28 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 29 C -0.23 -0.80 5.89 -20.01 -0.12 -0.92 16 30 C 0.42 3.18 6.98 25.67 0.18 3.36 16 31 O -0.50 -8.12 16.93 -5.02 -0.09 -8.20 16 32 H 0.39 -2.96 8.70 -74.06 -0.64 -3.60 16 33 H 0.09 0.52 7.96 -2.39 -0.02 0.50 16 34 H -0.26 1.45 7.11 99.48 0.71 2.15 16 35 H -0.30 -0.53 7.11 99.48 0.71 0.18 16 36 H 0.25 -4.44 4.77 -2.91 -0.01 -4.46 16 37 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.11 -0.76 8.13 -2.38 -0.02 -0.78 16 39 H 0.14 -1.10 7.03 -2.91 -0.02 -1.12 16 40 H 0.14 -0.92 8.06 -2.91 -0.02 -0.95 16 41 H 0.13 -0.74 8.06 -2.91 -0.02 -0.76 16 42 H 0.13 -0.67 8.06 -2.91 -0.02 -0.69 16 43 H 0.12 -0.43 8.03 -2.91 -0.02 -0.45 16 44 H 0.12 -0.47 8.09 -2.39 -0.02 -0.49 16 45 H 0.10 -0.23 7.44 -2.39 -0.02 -0.25 16 46 H 0.11 -0.90 8.09 -2.39 -0.02 -0.92 16 47 H 0.12 -0.91 7.45 -2.39 -0.02 -0.93 16 48 H 0.17 -0.78 6.96 -2.91 -0.02 -0.80 16 49 H 0.14 0.82 7.81 -2.91 -0.02 0.80 16 Total: 0.00 -26.63 441.36 4.21 -22.41 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: 0.45 Total: -13.70 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 3.75 Total: 6.33 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -2.13 Total: -10.56 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.78 Total: 0.14 kcal Atomic # 14 Polarization: -5.96 SS G_CDS: 2.05 Total: -3.91 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -26.63 4.21 -22.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12904926_484008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.988 kcal (2) G-P(sol) polarization free energy of solvation -26.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds