Wall clock time and date at job start Sat Mar 6 2021 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.46718 * 2 1 4 4 H 1.48506 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47334 * 59.99815 * 3 2 1 6 6 H 1.48500 * 109.47376 * 299.99812 * 3 2 1 7 7 C 1.50701 * 109.47079 * 119.99759 * 2 1 3 8 8 C 1.34542 * 120.20411 * 249.72686 * 7 2 1 9 9 O 1.33714 * 122.84717 * 179.72609 * 8 7 2 10 10 C 1.34876 * 122.41461 * 0.58529 * 9 8 7 11 11 C 1.40418 * 119.67741 * 359.69889 * 10 9 8 12 12 C 1.39385 * 120.23864 * 180.02562 * 11 10 9 13 13 C 1.37848 * 119.52708 * 359.96077 * 12 11 10 14 14 Br 1.89096 * 119.86335 * 180.02562 * 13 12 11 15 15 C 1.38833 * 120.27240 * 0.03824 * 13 12 11 16 16 C 1.37828 * 120.70799 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.04408 * 179.97438 * 16 15 13 18 18 O 1.45200 * 109.46850 * 0.02562 * 17 16 15 19 19 C 1.34229 * 116.99914 * 180.02562 * 18 17 16 20 20 O 1.20833 * 119.99909 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00236 * 180.02562 * 19 18 17 22 22 S 1.81402 * 109.47041 * 179.97438 * 21 19 18 23 23 O 1.42094 * 109.47289 * 289.05166 * 22 21 19 24 24 C 1.76202 * 102.99746 * 179.97438 * 22 21 19 25 25 C 1.38238 * 119.99148 * 269.72308 * 24 22 21 26 26 C 1.38217 * 120.01456 * 179.76656 * 25 24 22 27 27 C 1.38354 * 119.98418 * 0.53407 * 26 25 24 28 28 Cl 1.73601 * 120.01168 * 179.70118 * 27 26 25 29 29 C 1.38348 * 119.97159 * 359.72444 * 27 26 25 30 30 C 1.38210 * 119.99311 * 359.97438 * 29 27 26 31 31 C 1.41994 * 120.20405 * 70.00700 * 7 2 1 32 32 O 1.21920 * 121.40853 * 359.95478 * 31 7 2 33 33 H 0.96696 * 114.00435 * 299.99868 * 1 2 3 34 34 H 1.09001 * 109.47507 * 240.00284 * 2 1 3 35 35 H 1.08000 * 118.57531 * 0.02562 * 8 7 2 36 36 H 1.08005 * 120.23794 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.64759 * 179.97438 * 15 13 12 38 38 H 1.09006 * 109.47239 * 120.02323 * 17 16 15 39 39 H 1.08994 * 109.47224 * 240.02103 * 17 16 15 40 40 H 1.09001 * 109.46875 * 299.99346 * 21 19 18 41 41 H 1.08995 * 109.47217 * 59.99854 * 21 19 18 42 42 H 1.08005 * 119.98987 * 0.02917 * 25 24 22 43 43 H 1.07994 * 120.00580 * 180.25920 * 26 25 24 44 44 H 1.08006 * 120.00458 * 179.97438 * 29 27 26 45 45 H 1.08000 * 119.99690 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 1 3.5349 1.7567 0.0006 5 1 1.5548 2.4566 1.2125 6 1 1.5549 2.4566 -1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.5367 -0.0176 2.2122 9 8 2.9974 -0.5928 3.3280 10 6 2.9001 -1.9195 3.5507 11 6 2.2905 -2.7428 2.5903 12 6 2.1832 -4.1153 2.8086 13 6 2.6805 -4.6587 3.9737 14 35 2.5407 -6.5196 4.2794 15 6 3.2834 -3.8455 4.9238 16 6 3.3948 -2.4871 4.7188 17 6 4.0515 -1.6182 5.7604 18 8 4.4801 -2.4414 6.8771 19 6 5.0874 -1.8158 7.8976 20 8 5.2558 -0.6199 7.8588 21 6 5.5604 -2.6050 9.0911 22 16 6.3345 -1.4840 10.2890 23 8 7.5788 -1.0285 9.7759 24 6 6.8154 -2.5677 11.5924 25 6 5.9455 -2.8218 12.6363 26 6 6.3203 -3.6756 13.6565 27 6 7.5708 -4.2673 13.6386 28 17 8.0453 -5.3337 14.9236 29 6 8.4430 -4.0085 12.5963 30 6 8.0647 -3.1595 11.5735 31 6 1.7738 -2.1157 1.3583 32 8 1.2341 -2.7764 0.4873 33 1 -0.3934 0.4416 0.7650 34 1 1.7924 -0.5138 -0.8900 35 1 2.6515 1.0499 2.0961 36 1 1.7140 -4.7485 2.0701 37 1 3.6692 -4.2819 5.8333 38 1 4.9166 -1.1188 5.3241 39 1 3.3397 -0.8713 6.1117 40 1 4.7104 -3.1040 9.5566 41 1 6.2875 -3.3503 8.7689 42 1 4.9710 -2.3563 12.6524 43 1 5.6390 -3.8772 14.4698 44 1 9.4195 -4.4698 12.5820 45 1 8.7457 -2.9570 10.7601 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_12912122_484008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:16:55 Heat of formation + Delta-G solvation = -137.633437 kcal Electronic energy + Delta-G solvation = -37793.392332 eV Core-core repulsion = 32215.299777 eV Total energy + Delta-G solvation = -5578.092555 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 513.958 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.38537 -41.79053 -40.36111 -40.07431 -39.89780 -38.01627 -37.75737 -37.63859 -37.04557 -34.66640 -33.73240 -33.20858 -32.34335 -32.14572 -31.58167 -30.72126 -28.18817 -27.50660 -25.91512 -24.48242 -24.18381 -24.12360 -22.98252 -22.33797 -20.77353 -19.75552 -19.56046 -19.07688 -18.89422 -18.31035 -18.16887 -17.83120 -17.75318 -17.58281 -16.92676 -16.77710 -16.73758 -16.49440 -16.30302 -16.21537 -15.94566 -15.82115 -15.61445 -15.57727 -15.13559 -15.07484 -14.81503 -14.67879 -14.60176 -14.50361 -14.42328 -14.03378 -13.96535 -13.59514 -13.32017 -13.11764 -12.83734 -12.80862 -12.75633 -12.57661 -12.43459 -12.37638 -12.02444 -11.99078 -11.93911 -11.88354 -11.65204 -11.50077 -11.18635 -10.72457 -10.46435 -10.44653 -10.31479 -10.24277 -9.70360 -9.59329 -0.85179 -0.72750 -0.61143 -0.02176 0.02959 0.32538 0.33529 0.84564 0.84992 0.89237 0.90362 1.11722 1.25099 1.30082 1.37105 1.42919 1.70433 2.25398 2.30836 2.58983 2.68617 2.81462 3.05459 3.14758 3.30691 3.40725 3.49605 3.59822 3.62774 3.70200 3.71920 3.78244 3.83569 3.95155 4.01742 4.04326 4.09423 4.13444 4.22364 4.25289 4.33337 4.50164 4.57987 4.62944 4.65123 4.72779 4.76756 4.91678 4.95946 4.97665 5.06308 5.47877 5.69189 6.31914 6.41825 6.46211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.053 4.053 3 Si 0.926 3.074 4 H -0.241 1.241 5 H -0.244 1.244 6 H -0.236 1.236 7 C -0.310 4.310 8 C 0.130 3.870 9 O -0.212 6.212 10 C 0.163 3.837 11 C -0.211 4.211 12 C 0.003 3.997 13 C -0.120 4.120 14 Br -0.023 7.023 15 C -0.013 4.013 16 C -0.107 4.107 17 C 0.116 3.884 18 O -0.349 6.349 19 C 0.499 3.501 20 O -0.498 6.498 21 C -0.481 4.481 22 S 1.397 4.603 23 O -0.822 6.822 24 C -0.480 4.480 25 C -0.026 4.026 26 C -0.128 4.128 27 C 0.003 3.997 28 Cl -0.058 7.058 29 C -0.127 4.127 30 C -0.038 4.038 31 C 0.434 3.566 32 O -0.436 6.436 33 H 0.373 0.627 34 H 0.124 0.876 35 H 0.197 0.803 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 2.620 5.120 6.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.164 4.164 3 Si 0.747 3.253 4 H -0.164 1.164 5 H -0.167 1.167 6 H -0.159 1.159 7 C -0.313 4.313 8 C 0.065 3.935 9 O -0.116 6.116 10 C 0.117 3.883 11 C -0.213 4.213 12 C -0.016 4.016 13 C -0.200 4.200 14 Br 0.062 6.938 15 C -0.033 4.033 16 C -0.108 4.108 17 C 0.043 3.957 18 O -0.266 6.266 19 C 0.341 3.659 20 O -0.386 6.386 21 C -0.612 4.612 22 S 1.588 4.412 23 O -0.817 6.817 24 C -0.576 4.576 25 C -0.045 4.045 26 C -0.148 4.148 27 C -0.024 4.024 28 Cl -0.029 7.029 29 C -0.146 4.146 30 C -0.057 4.057 31 C 0.316 3.684 32 O -0.315 6.315 33 H 0.220 0.780 34 H 0.142 0.858 35 H 0.213 0.787 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.177 0.823 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.589 3.431 4.340 6.108 hybrid contribution 1.345 -1.753 -0.121 2.213 sum -1.244 1.678 4.219 4.707 Atomic orbital electron populations 1.86626 1.16621 1.81366 1.48506 1.24652 0.85483 1.09335 0.96897 0.86081 0.81151 0.75130 0.82979 1.16429 1.16748 1.15892 1.22080 1.10557 0.97421 1.01197 1.23870 0.89391 0.97898 0.82382 1.83092 1.69094 1.21291 1.38097 1.18872 0.95606 0.80228 0.93557 1.20739 1.07245 0.95008 0.98355 1.21153 0.92363 0.93139 0.94988 1.21844 1.07086 0.92829 0.98237 1.96853 1.97437 1.03168 1.96313 1.21044 0.92891 0.90888 0.98444 1.18770 1.04414 0.94042 0.93614 1.21600 1.00119 0.90920 0.83108 1.86400 1.69657 1.42312 1.28241 1.22423 0.74208 0.86529 0.82728 1.90777 1.52681 1.15656 1.79476 1.28289 1.12103 1.15155 1.05603 1.70819 1.00363 0.85554 0.84435 1.93137 1.42944 1.68160 1.77481 1.28049 1.00870 1.14851 1.13825 1.20879 0.98624 0.93950 0.91081 1.21276 0.95182 0.97945 1.00409 1.21277 0.95456 0.94625 0.91061 1.98422 1.91914 1.63574 1.48962 1.21238 1.00179 0.99688 0.93544 1.21173 0.94961 0.92013 0.97551 1.18198 0.77630 0.87834 0.84779 1.90787 1.34004 1.66364 1.40302 0.78030 0.85783 0.78673 0.82574 0.82144 0.88509 0.88219 0.82276 0.85095 0.83234 0.83907 0.84394 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.30 12.88 -35.23 -0.45 -0.76 16 2 C -0.05 0.04 2.46 36.01 0.09 0.13 16 3 Si 0.93 -2.58 25.30 -169.99 -4.30 -6.88 16 4 H -0.24 0.64 7.11 56.52 0.40 1.05 16 5 H -0.24 0.97 6.91 56.52 0.39 1.36 16 6 H -0.24 0.21 7.11 56.52 0.40 0.61 16 7 C -0.31 0.10 5.32 -104.49 -0.56 -0.46 16 8 C 0.13 -0.33 9.99 29.43 0.29 -0.04 16 9 O -0.21 0.35 9.21 5.66 0.05 0.40 16 10 C 0.16 -0.06 6.74 -38.49 -0.26 -0.32 16 11 C -0.21 -0.23 5.89 -104.84 -0.62 -0.85 16 12 C 0.00 0.00 9.40 -39.30 -0.37 -0.37 16 13 C -0.12 0.00 6.22 -39.50 -0.25 -0.25 16 14 Br -0.02 0.00 33.69 -68.01 -2.29 -2.29 16 15 C -0.01 0.01 9.10 -39.51 -0.36 -0.35 16 16 C -0.11 0.12 5.89 -104.50 -0.62 -0.50 16 17 C 0.12 -0.20 5.38 36.00 0.19 -0.01 16 18 O -0.35 0.50 8.68 -39.26 -0.34 0.16 16 19 C 0.50 -0.50 7.98 36.01 0.29 -0.21 16 20 O -0.50 -0.77 15.61 -18.76 -0.29 -1.06 16 21 C -0.48 1.85 6.48 36.01 0.23 2.08 16 22 S 1.40 -3.57 12.68 -107.50 -1.36 -4.93 16 23 O -0.82 -3.28 16.90 -35.23 -0.60 -3.88 16 24 C -0.48 1.01 5.61 -39.58 -0.22 0.79 16 25 C -0.03 0.10 9.75 -39.59 -0.39 -0.28 16 26 C -0.13 0.29 9.83 -39.55 -0.39 -0.10 16 27 C 0.00 0.00 6.32 -39.50 -0.25 -0.25 16 28 Cl -0.06 -0.01 28.96 -51.86 -1.50 -1.51 16 29 C -0.13 0.02 9.83 -39.55 -0.39 -0.37 16 30 C -0.04 0.00 9.44 -39.59 -0.37 -0.37 16 31 C 0.43 1.06 6.98 -34.34 -0.24 0.82 16 32 O -0.44 -2.50 16.93 4.99 0.08 -2.41 16 33 H 0.37 -1.33 8.70 45.56 0.40 -0.93 16 34 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 35 H 0.20 -1.07 4.64 -52.49 -0.24 -1.31 16 36 H 0.16 0.14 7.81 -52.48 -0.41 -0.27 16 37 H 0.16 -0.36 6.96 -52.48 -0.37 -0.72 16 38 H 0.10 -0.17 8.13 -51.93 -0.42 -0.59 16 39 H 0.10 -0.28 8.13 -51.93 -0.42 -0.70 16 40 H 0.16 -1.21 8.14 -51.92 -0.42 -1.64 16 41 H 0.13 -0.47 8.14 -51.93 -0.42 -0.90 16 42 H 0.15 -1.24 8.06 -52.48 -0.42 -1.66 16 43 H 0.14 -0.58 8.06 -52.49 -0.42 -1.00 16 44 H 0.14 -0.15 8.06 -52.48 -0.42 -0.57 16 45 H 0.14 0.07 7.45 -52.49 -0.39 -0.32 16 LS Contribution 440.81 15.07 6.64 6.64 Total: 0.00 -13.71 440.81 -11.73 -25.43 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: -3.19 Total: -8.01 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.17 Total: -0.90 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -1.55 Total: -7.55 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: -4.30 Total: -6.88 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.36 Total: -4.93 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.50 Total: -1.51 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.29 kcal Total LS contribution 6.64 Total: 6.64 kcal Total: -13.71 -11.73 -25.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12912122_484008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.202 kcal (2) G-P(sol) polarization free energy of solvation -13.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds