Wall clock time and date at job start Sat Mar 6 2021 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.46718 * 2 1 4 4 H 1.48506 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47334 * 59.99815 * 3 2 1 6 6 H 1.48500 * 109.47376 * 299.99812 * 3 2 1 7 7 C 1.50701 * 109.47079 * 119.99759 * 2 1 3 8 8 C 1.34542 * 120.20411 * 249.72686 * 7 2 1 9 9 O 1.33714 * 122.84717 * 179.72609 * 8 7 2 10 10 C 1.34876 * 122.41461 * 0.58529 * 9 8 7 11 11 C 1.40418 * 119.67741 * 359.69889 * 10 9 8 12 12 C 1.39385 * 120.23864 * 180.02562 * 11 10 9 13 13 C 1.37848 * 119.52708 * 359.96077 * 12 11 10 14 14 Br 1.89096 * 119.86335 * 180.02562 * 13 12 11 15 15 C 1.38833 * 120.27240 * 0.03824 * 13 12 11 16 16 C 1.37828 * 120.70799 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.04408 * 179.97438 * 16 15 13 18 18 O 1.45200 * 109.46850 * 0.02562 * 17 16 15 19 19 C 1.34229 * 116.99914 * 180.02562 * 18 17 16 20 20 O 1.20833 * 119.99909 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00236 * 180.02562 * 19 18 17 22 22 S 1.81402 * 109.47041 * 179.97438 * 21 19 18 23 23 O 1.42094 * 109.47289 * 289.05166 * 22 21 19 24 24 C 1.76202 * 102.99746 * 179.97438 * 22 21 19 25 25 C 1.38238 * 119.99148 * 269.72308 * 24 22 21 26 26 C 1.38217 * 120.01456 * 179.76656 * 25 24 22 27 27 C 1.38354 * 119.98418 * 0.53407 * 26 25 24 28 28 Cl 1.73601 * 120.01168 * 179.70118 * 27 26 25 29 29 C 1.38348 * 119.97159 * 359.72444 * 27 26 25 30 30 C 1.38210 * 119.99311 * 359.97438 * 29 27 26 31 31 C 1.41994 * 120.20405 * 70.00700 * 7 2 1 32 32 O 1.21920 * 121.40853 * 359.95478 * 31 7 2 33 33 H 0.96696 * 114.00435 * 299.99868 * 1 2 3 34 34 H 1.09001 * 109.47507 * 240.00284 * 2 1 3 35 35 H 1.08000 * 118.57531 * 0.02562 * 8 7 2 36 36 H 1.08005 * 120.23794 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.64759 * 179.97438 * 15 13 12 38 38 H 1.09006 * 109.47239 * 120.02323 * 17 16 15 39 39 H 1.08994 * 109.47224 * 240.02103 * 17 16 15 40 40 H 1.09001 * 109.46875 * 299.99346 * 21 19 18 41 41 H 1.08995 * 109.47217 * 59.99854 * 21 19 18 42 42 H 1.08005 * 119.98987 * 0.02917 * 25 24 22 43 43 H 1.07994 * 120.00580 * 180.25920 * 26 25 24 44 44 H 1.08006 * 120.00458 * 179.97438 * 29 27 26 45 45 H 1.08000 * 119.99690 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 1 3.5349 1.7567 0.0006 5 1 1.5548 2.4566 1.2125 6 1 1.5549 2.4566 -1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.5367 -0.0176 2.2122 9 8 2.9974 -0.5928 3.3280 10 6 2.9001 -1.9195 3.5507 11 6 2.2905 -2.7428 2.5903 12 6 2.1832 -4.1153 2.8086 13 6 2.6805 -4.6587 3.9737 14 35 2.5407 -6.5196 4.2794 15 6 3.2834 -3.8455 4.9238 16 6 3.3948 -2.4871 4.7188 17 6 4.0515 -1.6182 5.7604 18 8 4.4801 -2.4414 6.8771 19 6 5.0874 -1.8158 7.8976 20 8 5.2558 -0.6199 7.8588 21 6 5.5604 -2.6050 9.0911 22 16 6.3345 -1.4840 10.2890 23 8 7.5788 -1.0285 9.7759 24 6 6.8154 -2.5677 11.5924 25 6 5.9455 -2.8218 12.6363 26 6 6.3203 -3.6756 13.6565 27 6 7.5708 -4.2673 13.6386 28 17 8.0453 -5.3337 14.9236 29 6 8.4430 -4.0085 12.5963 30 6 8.0647 -3.1595 11.5735 31 6 1.7738 -2.1157 1.3583 32 8 1.2341 -2.7764 0.4873 33 1 -0.3934 0.4416 0.7650 34 1 1.7924 -0.5138 -0.8900 35 1 2.6515 1.0499 2.0961 36 1 1.7140 -4.7485 2.0701 37 1 3.6692 -4.2819 5.8333 38 1 4.9166 -1.1188 5.3241 39 1 3.3397 -0.8713 6.1117 40 1 4.7104 -3.1040 9.5566 41 1 6.2875 -3.3503 8.7689 42 1 4.9710 -2.3563 12.6524 43 1 5.6390 -3.8772 14.4698 44 1 9.4195 -4.4698 12.5820 45 1 8.7457 -2.9570 10.7601 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12912122_484008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:16:54 Heat of formation + Delta-G solvation = -140.021662 kcal Electronic energy + Delta-G solvation = -37793.495894 eV Core-core repulsion = 32215.299777 eV Total energy + Delta-G solvation = -5578.196116 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 513.958 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.35697 -41.69557 -40.19661 -40.16257 -39.87764 -37.96182 -37.73328 -37.56679 -37.09653 -34.65616 -33.71285 -33.19314 -32.16422 -31.98483 -31.39568 -30.71793 -28.08578 -27.46067 -25.90056 -24.44427 -24.01930 -23.96322 -22.91010 -22.26461 -20.73799 -19.69200 -19.43874 -19.01779 -18.78303 -18.17971 -18.06746 -17.74848 -17.66932 -17.52011 -16.78920 -16.78779 -16.63470 -16.44815 -16.24835 -16.17235 -15.83911 -15.72054 -15.46695 -15.41870 -15.28270 -15.00606 -14.61617 -14.56393 -14.49144 -14.45320 -14.33025 -13.97399 -13.94683 -13.49941 -13.28016 -12.95384 -12.78812 -12.71778 -12.62781 -12.45709 -12.33146 -12.16912 -11.92469 -11.91288 -11.84402 -11.76687 -11.60132 -11.52690 -11.26709 -10.70713 -10.44021 -10.38239 -10.14399 -10.13926 -9.59178 -9.55882 -0.86110 -0.71482 -0.44846 0.01971 0.19875 0.32890 0.49994 0.94162 0.97560 0.99978 1.05664 1.35749 1.39452 1.47275 1.51142 1.57199 1.93509 2.27316 2.41129 2.67399 2.76881 2.85569 3.17339 3.26119 3.43564 3.55182 3.66107 3.68050 3.72933 3.83361 3.85482 3.95866 4.04143 4.09336 4.14167 4.24845 4.28481 4.31601 4.32029 4.47750 4.52098 4.58454 4.63128 4.65071 4.78810 4.86324 4.90091 5.01136 5.07780 5.15608 5.19210 5.68411 5.73035 6.32471 6.43888 6.72354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.236 1.236 5 H -0.209 1.209 6 H -0.268 1.268 7 C -0.333 4.333 8 C 0.159 3.841 9 O -0.202 6.202 10 C 0.166 3.834 11 C -0.226 4.226 12 C -0.008 4.008 13 C -0.121 4.121 14 Br -0.025 7.025 15 C -0.009 4.009 16 C -0.098 4.098 17 C 0.113 3.887 18 O -0.347 6.347 19 C 0.498 3.502 20 O -0.527 6.527 21 C -0.475 4.475 22 S 1.442 4.558 23 O -0.895 6.895 24 C -0.478 4.478 25 C -0.011 4.011 26 C -0.131 4.131 27 C -0.012 4.012 28 Cl -0.071 7.071 29 C -0.143 4.143 30 C -0.060 4.060 31 C 0.426 3.574 32 O -0.490 6.490 33 H 0.389 0.611 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.207 0.793 41 H 0.133 0.867 42 H 0.203 0.797 43 H 0.164 0.836 44 H 0.134 0.866 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 4.134 7.365 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.159 1.159 5 H -0.131 1.131 6 H -0.193 1.193 7 C -0.335 4.335 8 C 0.094 3.906 9 O -0.105 6.105 10 C 0.120 3.880 11 C -0.229 4.229 12 C -0.028 4.028 13 C -0.201 4.201 14 Br 0.060 6.940 15 C -0.028 4.028 16 C -0.100 4.100 17 C 0.040 3.960 18 O -0.264 6.264 19 C 0.342 3.658 20 O -0.417 6.417 21 C -0.607 4.607 22 S 1.637 4.363 23 O -0.891 6.891 24 C -0.575 4.575 25 C -0.030 4.030 26 C -0.151 4.151 27 C -0.039 4.039 28 Cl -0.042 7.042 29 C -0.163 4.163 30 C -0.080 4.080 31 C 0.312 3.688 32 O -0.373 6.373 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.250 0.750 36 H 0.163 0.837 37 H 0.194 0.806 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.224 0.776 41 H 0.151 0.849 42 H 0.220 0.780 43 H 0.182 0.818 44 H 0.152 0.848 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.590 4.938 6.640 9.020 hybrid contribution 1.604 -2.286 -0.830 2.913 sum -1.986 2.653 5.809 6.688 Atomic orbital electron populations 1.86570 1.17765 1.82078 1.49752 1.25016 0.84906 1.11766 0.95963 0.85480 0.80800 0.71830 0.82938 1.15924 1.13111 1.19275 1.22019 1.12718 0.96210 1.02589 1.24400 0.86476 0.98916 0.80803 1.83145 1.68521 1.20562 1.38277 1.18872 0.95228 0.80554 0.93355 1.20747 1.08231 0.95346 0.98544 1.21127 0.93016 0.93293 0.95374 1.21862 1.07208 0.92853 0.98157 1.96847 1.97471 1.03433 1.96223 1.21237 0.92131 0.90884 0.98543 1.18839 1.03709 0.94025 0.93401 1.21689 1.00504 0.90875 0.82923 1.86391 1.69509 1.42256 1.28199 1.22849 0.73525 0.86345 0.83097 1.90779 1.53846 1.16997 1.80030 1.28257 1.13608 1.14461 1.04406 1.69930 0.97938 0.84726 0.83745 1.93033 1.45830 1.71037 1.79161 1.28081 1.00412 1.14384 1.14608 1.21485 1.00085 0.92365 0.89040 1.21666 0.94531 0.97536 1.01353 1.21459 0.96456 0.95199 0.90783 1.98412 1.92173 1.64123 1.49450 1.21257 1.00527 1.00367 0.94150 1.21161 0.96080 0.93224 0.97502 1.18713 0.76498 0.89124 0.84514 1.90755 1.36940 1.67548 1.42036 0.76226 0.87950 0.75015 0.83653 0.80582 0.88361 0.86686 0.77593 0.84928 0.77977 0.81839 0.84783 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.51 12.88 -148.98 -1.92 -3.43 16 2 C -0.07 0.02 2.46 71.24 0.17 0.20 16 3 Si 0.97 -6.63 25.30 68.60 1.74 -4.90 16 4 H -0.24 1.78 7.11 99.48 0.71 2.49 16 5 H -0.21 2.53 6.91 99.48 0.69 3.21 16 6 H -0.27 0.39 7.11 99.48 0.71 1.09 16 7 C -0.33 0.02 5.32 -19.78 -0.11 -0.08 16 8 C 0.16 -1.07 9.99 66.97 0.67 -0.40 16 9 O -0.20 1.03 9.21 -2.65 -0.02 1.01 16 10 C 0.17 -0.23 6.74 22.98 0.15 -0.08 16 11 C -0.23 -0.77 5.89 -20.01 -0.12 -0.88 16 12 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 13 C -0.12 -0.05 6.22 22.32 0.14 0.09 16 14 Br -0.03 -0.01 33.69 -20.37 -0.69 -0.70 16 15 C -0.01 0.03 9.10 22.32 0.20 0.23 16 16 C -0.10 0.34 5.89 -19.78 -0.12 0.22 16 17 C 0.11 -0.62 5.38 71.24 0.38 -0.23 16 18 O -0.35 1.77 8.68 -51.41 -0.45 1.32 16 19 C 0.50 -1.97 7.98 71.24 0.57 -1.41 16 20 O -0.53 -0.96 15.61 21.94 0.34 -0.62 16 21 C -0.47 4.81 6.48 71.24 0.46 5.28 16 22 S 1.44 -9.00 12.68 -56.49 -0.72 -9.72 16 23 O -0.89 -7.98 16.90 -148.98 -2.52 -10.50 16 24 C -0.48 2.60 5.61 22.27 0.12 2.72 16 25 C -0.01 0.12 9.75 22.26 0.22 0.34 16 26 C -0.13 0.87 9.83 22.29 0.22 1.09 16 27 C -0.01 0.01 6.32 22.32 0.14 0.15 16 28 Cl -0.07 -0.05 28.96 -2.72 -0.08 -0.13 16 29 C -0.14 -0.12 9.83 22.29 0.22 0.10 16 30 C -0.06 -0.05 9.44 22.27 0.21 0.16 16 31 C 0.43 3.01 6.98 25.67 0.18 3.19 16 32 O -0.49 -7.46 16.93 -5.06 -0.09 -7.54 16 33 H 0.39 -2.51 8.70 -74.06 -0.64 -3.16 16 34 H 0.10 0.29 7.96 -2.39 -0.02 0.27 16 35 H 0.23 -3.37 4.64 -2.91 -0.01 -3.38 16 36 H 0.15 0.72 7.81 -2.91 -0.02 0.70 16 37 H 0.18 -1.10 6.96 -2.91 -0.02 -1.12 16 38 H 0.10 -0.51 8.13 -2.38 -0.02 -0.53 16 39 H 0.12 -0.93 8.13 -2.39 -0.02 -0.95 16 40 H 0.21 -4.10 8.14 -2.39 -0.02 -4.12 16 41 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H 0.20 -4.45 8.06 -2.91 -0.02 -4.47 16 43 H 0.16 -1.79 8.06 -2.91 -0.02 -1.81 16 44 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 45 H 0.12 0.43 7.45 -2.91 -0.02 0.41 16 Total: 0.00 -37.70 440.81 0.75 -36.95 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: 1.21 Total: -12.61 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 3.94 Total: 10.86 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -4.65 Total: -19.76 kcal Atomic # 14 Polarization: -6.63 SS G_CDS: 1.74 Total: -4.90 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -0.72 Total: -9.72 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -37.70 0.75 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12912122_484008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.069 kcal (2) G-P(sol) polarization free energy of solvation -37.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds