Wall clock time and date at job start Sat Mar 6 2021 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.47203 * 2 1 4 4 H 1.48501 * 109.46818 * 299.99808 * 3 2 1 5 5 H 1.48499 * 109.47154 * 59.99741 * 3 2 1 6 6 H 1.48497 * 109.47479 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.47333 * 240.00042 * 2 1 3 8 8 C 1.34533 * 120.20724 * 119.97842 * 7 2 1 9 9 O 1.33717 * 122.85218 * 180.02562 * 8 7 2 10 10 C 1.34879 * 122.40807 * 359.95795 * 9 8 7 11 11 C 1.40415 * 119.68354 * 0.04031 * 10 9 8 12 12 C 1.39390 * 120.23967 * 179.97438 * 11 10 9 13 13 C 1.37841 * 119.52366 * 0.02562 * 12 11 10 14 14 Br 1.89101 * 119.86136 * 180.02562 * 13 12 11 15 15 C 1.38838 * 120.27797 * 359.78183 * 13 12 11 16 16 C 1.37824 * 120.70416 * 0.45675 * 15 13 12 17 17 C 1.50703 * 120.04269 * 179.80197 * 16 15 13 18 18 O 1.42893 * 109.46784 * 359.72179 * 17 16 15 19 19 C 1.35257 * 116.99912 * 179.97438 * 18 17 16 20 20 O 1.21780 * 119.99767 * 0.27680 * 19 18 17 21 21 C 1.40015 * 120.00161 * 180.02562 * 19 18 17 22 22 S 1.55355 * 119.99917 * 180.02562 * 21 19 18 23 23 O 1.52197 * 102.99944 * 286.87377 * 22 21 19 24 24 C 1.76197 * 103.00071 * 179.97438 * 22 21 19 25 25 C 1.38231 * 119.98829 * 269.72587 * 24 22 21 26 26 C 1.38223 * 120.01299 * 179.76672 * 25 24 22 27 27 C 1.38352 * 119.98354 * 0.52843 * 26 25 24 28 28 Cl 1.73603 * 120.00898 * 179.70374 * 27 26 25 29 29 C 1.38346 * 119.97294 * 359.72533 * 27 26 25 30 30 C 1.38215 * 119.99115 * 359.97438 * 29 27 26 31 31 C 1.42002 * 120.19752 * 299.99768 * 7 2 1 32 32 O 1.21910 * 121.41031 * 359.95507 * 31 7 2 33 33 H 0.96701 * 113.99255 * 60.00415 * 1 2 3 34 34 H 1.09001 * 109.47313 * 119.99275 * 2 1 3 35 35 H 1.08002 * 118.57510 * 0.02562 * 8 7 2 36 36 H 1.08001 * 120.23445 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.65167 * 180.25836 * 15 13 12 38 38 H 1.08997 * 109.47036 * 239.72002 * 17 16 15 39 39 H 1.08998 * 109.46923 * 119.72363 * 17 16 15 40 40 H 1.07999 * 120.00009 * 0.02562 * 21 19 18 41 41 H 1.07997 * 119.99728 * 0.02562 * 25 24 22 42 42 H 1.07999 * 120.00342 * 180.25629 * 26 25 24 43 43 H 1.08011 * 120.00390 * 179.97438 * 29 27 26 44 44 H 1.08000 * 119.99566 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 -1.2126 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7566 -0.0006 7 6 1.9314 -0.7104 -1.2305 8 6 2.7048 -0.0605 -2.1189 9 8 3.1787 -0.6385 -3.2276 10 6 2.9171 -1.9240 -3.5411 11 6 2.1191 -2.6999 -2.6850 12 6 1.8409 -4.0295 -2.9979 13 6 2.3552 -4.5773 -4.1535 14 35 1.9832 -6.3798 -4.5876 15 6 3.1410 -3.8097 -5.0025 16 6 3.4267 -2.4956 -4.7010 17 6 4.2849 -1.6774 -5.6311 18 8 4.6827 -2.4817 -6.7432 19 6 5.4626 -1.8934 -7.6787 20 8 5.7981 -0.7301 -7.5477 21 6 5.8884 -2.6235 -8.7950 22 16 6.7847 -1.9479 -9.8691 23 8 5.8155 -1.0227 -10.5910 24 6 7.0450 -3.2404 -11.0380 25 6 8.1280 -4.0884 -10.9006 26 6 8.3301 -5.1054 -11.8145 27 6 7.4543 -5.2678 -12.8732 28 17 7.7118 -6.5402 -14.0257 29 6 6.3735 -4.4155 -13.0131 30 6 6.1690 -3.4027 -12.0951 31 6 1.5910 -2.0699 -1.4593 32 8 0.8929 -2.6906 -0.6760 33 1 -0.3932 0.4417 -0.7651 34 1 1.7924 -0.5137 0.8900 35 1 2.9536 0.9731 -1.9285 36 1 1.2267 -4.6260 -2.3396 37 1 3.5353 -4.2480 -5.9074 38 1 5.1703 -1.3310 -5.0980 39 1 3.7168 -0.8186 -5.9885 40 1 5.5938 -3.6562 -8.9093 41 1 8.8141 -3.9588 -10.0767 42 1 9.1739 -5.7704 -11.7047 43 1 5.6897 -4.5416 -13.8396 44 1 5.3256 -2.7371 -12.2045 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12912122_484008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:17:03 Heat of formation + Delta-G solvation = -218.504490 kcal Electronic energy + Delta-G solvation = -37642.606559 eV Core-core repulsion = 32074.662912 eV Total energy + Delta-G solvation = -5567.943648 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 512.951 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.36023 -40.93617 -40.15352 -40.03059 -39.73612 -37.80290 -37.47194 -37.05653 -34.57147 -34.07627 -33.66470 -33.10687 -32.00208 -31.69734 -30.81375 -30.40962 -27.83997 -27.41459 -25.84734 -24.43634 -23.83843 -23.76500 -22.67806 -22.00297 -20.72280 -19.57991 -19.17915 -18.86995 -18.11812 -17.92922 -17.76757 -17.51615 -17.12614 -16.96260 -16.68465 -16.42890 -16.31205 -16.25070 -16.12252 -15.99829 -15.78266 -15.25612 -15.18832 -14.92291 -14.69427 -14.53273 -14.46547 -14.43314 -14.37693 -14.10520 -13.93499 -13.63745 -13.13565 -12.88139 -12.69096 -12.53982 -12.48344 -12.39868 -12.37953 -12.13281 -12.08014 -11.82294 -11.78696 -11.58518 -11.55067 -11.27628 -10.99408 -10.73268 -10.60019 -10.44506 -10.32587 -10.02033 -9.87143 -9.58680 -9.29372 -7.98262 -0.86663 -0.73091 -0.07695 0.01882 0.26711 0.31605 0.95493 1.01878 1.07686 1.38829 1.45949 1.50964 1.62072 1.90836 2.21437 2.27371 2.33452 2.52557 2.72551 2.96751 3.21405 3.26593 3.29187 3.50284 3.65348 3.68881 3.77058 3.86697 3.92687 4.02958 4.07928 4.11623 4.18936 4.27715 4.35177 4.44314 4.54827 4.58171 4.63670 4.63889 4.65961 4.74908 4.96505 5.00666 5.04466 5.16598 5.29512 5.39948 5.46742 5.77236 5.81251 6.06731 6.31592 6.70537 7.57944 Molecular weight = 512.95amu Principal moments of inertia in cm(-1) A = 0.006316 B = 0.001235 C = 0.001052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4432.079295 B =22660.550638 C =26613.992000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.064 4.064 3 Si 0.970 3.030 4 H -0.229 1.229 5 H -0.255 1.255 6 H -0.231 1.231 7 C -0.328 4.328 8 C 0.151 3.849 9 O -0.210 6.210 10 C 0.167 3.833 11 C -0.223 4.223 12 C 0.000 4.000 13 C -0.118 4.118 14 Br -0.021 7.021 15 C -0.017 4.017 16 C -0.099 4.099 17 C 0.116 3.884 18 O -0.378 6.378 19 C 0.530 3.470 20 O -0.637 6.637 21 C -1.040 5.040 22 S 1.506 4.494 23 O -1.000 7.000 24 C -0.440 4.440 25 C -0.035 4.035 26 C -0.123 4.123 27 C -0.019 4.019 28 Cl -0.061 7.061 29 C -0.135 4.135 30 C -0.073 4.073 31 C 0.435 3.565 32 O -0.477 6.477 33 H 0.386 0.614 34 H 0.115 0.885 35 H 0.230 0.770 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.180 0.820 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -2.495 12.998 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.152 1.152 5 H -0.178 1.178 6 H -0.154 1.154 7 C -0.331 4.331 8 C 0.086 3.914 9 O -0.113 6.113 10 C 0.121 3.879 11 C -0.225 4.225 12 C -0.019 4.019 13 C -0.198 4.198 14 Br 0.065 6.935 15 C -0.036 4.036 16 C -0.100 4.100 17 C 0.041 3.959 18 O -0.298 6.298 19 C 0.396 3.604 20 O -0.544 6.544 21 C -1.166 5.166 22 S 1.710 4.290 23 O -0.996 6.996 24 C -0.537 4.537 25 C -0.054 4.054 26 C -0.142 4.142 27 C -0.046 4.046 28 Cl -0.032 7.032 29 C -0.155 4.155 30 C -0.092 4.092 31 C 0.320 3.680 32 O -0.359 6.359 33 H 0.235 0.765 34 H 0.133 0.867 35 H 0.246 0.754 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.197 0.803 42 H 0.189 0.811 43 H 0.159 0.841 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.028 -1.819 13.582 13.742 hybrid contribution -2.931 -1.511 -1.136 3.488 sum -1.903 -3.331 12.446 13.024 Atomic orbital electron populations 1.86540 1.17647 1.82054 1.49445 1.25034 0.84979 1.11516 0.95614 0.85484 0.81068 0.72081 0.82609 1.15226 1.17841 1.15382 1.22108 1.09712 0.97541 1.03759 1.24412 0.88346 0.97929 0.80751 1.83177 1.64488 1.23903 1.39768 1.18795 0.94456 0.81677 0.92945 1.20834 1.05459 0.96399 0.99837 1.21142 0.94227 0.92852 0.93729 1.21780 1.05271 0.93910 0.98828 1.96754 1.94249 1.08665 1.93877 1.21074 0.92583 0.91605 0.98359 1.18949 1.02138 0.94826 0.94130 1.20861 0.97645 0.91959 0.85444 1.86148 1.65884 1.44828 1.32950 1.18007 0.76060 0.84670 0.81633 1.90674 1.63813 1.19472 1.80395 1.26656 1.55147 1.12719 1.22089 1.65699 1.07148 0.76949 0.79158 1.94383 1.68438 1.61436 1.75357 1.28225 1.00978 1.14700 1.09763 1.21313 0.94802 0.90958 0.98340 1.21553 1.00031 0.99465 0.93153 1.21149 0.97410 0.92316 0.93754 1.98352 1.96209 1.49764 1.58858 1.21196 0.98351 0.95432 1.00526 1.21063 0.97929 0.96098 0.94133 1.18473 0.78452 0.87905 0.83176 1.90727 1.32383 1.66695 1.46066 0.76498 0.86724 0.75395 0.81987 0.83425 0.89666 0.91383 0.88257 0.80256 0.81101 0.84103 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -9.86 12.52 -147.90 -1.85 -11.71 16 2 C -0.06 -0.95 2.54 71.24 0.18 -0.77 16 3 Si 0.97 8.34 25.09 68.60 1.72 10.07 16 4 H -0.23 -1.57 7.11 99.48 0.71 -0.86 16 5 H -0.25 -2.86 7.11 99.48 0.71 -2.15 16 6 H -0.23 -1.66 7.11 99.48 0.71 -0.96 16 7 C -0.33 -6.08 5.40 -19.78 -0.11 -6.19 16 8 C 0.15 2.33 10.00 66.97 0.67 3.00 16 9 O -0.21 -4.67 9.21 -2.70 -0.02 -4.70 16 10 C 0.17 4.47 6.74 22.98 0.15 4.62 16 11 C -0.22 -5.81 5.89 -20.00 -0.12 -5.92 16 12 C 0.00 0.01 9.40 22.45 0.21 0.22 16 13 C -0.12 -3.18 6.22 22.32 0.14 -3.04 16 14 Br -0.02 -0.51 33.69 -20.37 -0.69 -1.20 16 15 C -0.02 -0.51 9.10 22.32 0.20 -0.31 16 16 C -0.10 -3.11 5.89 -19.78 -0.12 -3.23 16 17 C 0.12 4.43 5.30 71.24 0.38 4.81 16 18 O -0.38 -18.07 8.58 -61.89 -0.53 -18.60 16 19 C 0.53 29.30 7.63 68.25 0.52 29.82 16 20 O -0.64 -37.02 16.06 18.91 0.30 -36.72 16 21 C -1.04 -56.03 8.93 68.25 0.61 -55.42 16 22 S 1.51 71.57 12.78 -56.49 -0.72 70.84 16 23 O -1.00 -62.69 17.08 -148.98 -2.54 -65.23 16 24 C -0.44 -17.50 5.35 22.27 0.12 -17.38 16 25 C -0.03 -1.02 9.75 22.26 0.22 -0.80 16 26 C -0.12 -3.12 9.83 22.29 0.22 -2.90 16 27 C -0.02 -0.55 6.32 22.32 0.14 -0.41 16 28 Cl -0.06 -1.42 28.96 -2.72 -0.08 -1.50 16 29 C -0.14 -4.50 9.83 22.29 0.22 -4.28 16 30 C -0.07 -3.02 9.46 22.27 0.21 -2.81 16 31 C 0.43 11.09 6.91 25.67 0.18 11.27 16 32 O -0.48 -14.70 16.66 -3.94 -0.07 -14.76 16 33 H 0.39 4.01 8.70 -74.06 -0.64 3.37 16 34 H 0.11 1.77 7.96 -2.39 -0.02 1.75 16 35 H 0.23 1.68 4.66 -2.91 -0.01 1.66 16 36 H 0.16 3.78 7.81 -2.91 -0.02 3.76 16 37 H 0.15 5.04 6.97 -2.91 -0.02 5.02 16 38 H 0.09 3.09 8.13 -2.39 -0.02 3.07 16 39 H 0.07 2.68 8.13 -2.39 -0.02 2.66 16 40 H 0.10 5.44 7.87 -7.38 -0.06 5.39 16 41 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.10 4.84 7.24 -2.91 -0.02 4.82 16 Total: -1.00 -85.76 434.07 0.76 -85.00 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 1.21 Total: 38.22 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 4.03 Total: -49.73 kcal Atomic # 8 Polarization: -147.00 SS G_CDS: -4.71 Total: -151.71 kcal Atomic # 14 Polarization: 8.34 SS G_CDS: 1.72 Total: 10.07 kcal Atomic # 16 Polarization: 71.57 SS G_CDS: -0.72 Total: 70.84 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal Total: -85.76 0.76 -85.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12912122_484008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.508 kcal (2) G-P(sol) polarization free energy of solvation -85.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds