Wall clock time and date at job start Sat Mar 6 2021 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47073 * 2 1 4 4 C 1.50699 * 109.47078 * 120.00000 * 2 1 3 5 5 C 1.38337 * 119.87371 * 65.00319 * 4 2 1 6 6 C 1.38001 * 120.12821 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87156 * 0.02562 * 6 5 4 8 8 C 1.48269 * 120.12732 * 180.02562 * 7 6 5 9 9 C 1.39515 * 119.97177 * 179.97438 * 8 7 6 10 10 C 1.37639 * 120.03249 * 179.97438 * 9 8 7 11 11 C 1.39761 * 119.97072 * 0.02562 * 10 9 8 12 12 C 1.47592 * 120.03305 * 179.97438 * 11 10 9 13 13 O 1.21487 * 120.00099 * 179.97438 * 12 11 10 14 14 O 1.34733 * 119.99811 * 359.97288 * 12 11 10 15 15 C 1.45204 * 116.99968 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47274 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.47531 * 305.00329 * 16 15 14 18 18 C 1.52998 * 109.47090 * 65.00109 * 16 15 14 19 19 C 1.53006 * 109.47066 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47319 * 300.00226 * 19 18 16 21 21 H 1.09000 * 109.47163 * 299.99993 * 20 19 18 22 22 O 1.42900 * 109.47528 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47236 * 59.99878 * 20 19 18 24 24 C 1.52998 * 109.47243 * 299.99868 * 23 20 19 25 25 C 1.39763 * 119.94192 * 359.97331 * 11 10 9 26 26 C 1.37654 * 119.96742 * 0.02562 * 25 11 10 27 27 C 1.39413 * 119.74840 * 0.26755 * 7 6 5 28 28 C 1.38009 * 119.86595 * 359.45700 * 27 7 6 29 29 H 0.96703 * 114.00218 * 299.99859 * 1 2 3 30 30 H 1.08997 * 109.46943 * 240.00034 * 2 1 3 31 31 H 1.48504 * 110.00236 * 178.68195 * 3 2 1 32 32 H 1.48498 * 109.99924 * 299.99913 * 3 2 1 33 33 H 1.07996 * 119.93111 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.05950 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.98404 * 359.71648 * 9 8 7 36 36 H 1.08002 * 120.01839 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47407 * 300.00318 * 15 14 12 38 38 H 1.09006 * 109.46703 * 60.00447 * 15 14 12 39 39 H 1.08999 * 109.47088 * 300.00057 * 18 16 15 40 40 H 1.09000 * 109.46951 * 60.00241 * 18 16 15 41 41 H 1.09008 * 109.46928 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46998 * 60.00321 * 19 18 16 43 43 H 0.96696 * 114.00054 * 59.99064 * 22 20 19 44 44 H 1.08999 * 109.47088 * 180.02562 * 23 20 19 45 45 H 1.08994 * 109.47302 * 60.00236 * 23 20 19 46 46 H 1.09000 * 109.47242 * 299.99938 * 24 23 20 47 47 H 1.09003 * 109.47106 * 179.97438 * 24 23 20 48 48 H 1.08002 * 120.02222 * 179.97438 * 25 11 10 49 49 H 1.08000 * 119.98347 * 180.02562 * 26 25 11 50 50 H 1.08000 * 120.07018 * 179.70274 * 27 7 6 51 51 H 1.07999 * 119.93666 * 180.27297 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6831 -2.0612 1.3958 6 6 2.1401 -2.7169 2.5208 7 6 2.8528 -2.0152 3.4919 8 6 3.3470 -2.7141 4.7025 9 6 4.0604 -2.0088 5.6721 10 6 4.5193 -2.6563 6.7966 11 6 4.2709 -4.0211 6.9668 12 6 4.7628 -4.7168 8.1719 13 8 4.5461 -5.9031 8.3194 14 8 5.4523 -4.0363 9.1083 15 6 5.9048 -4.7847 10.2674 16 6 6.6626 -3.8510 11.2134 17 1 7.4704 -3.3607 10.6701 18 6 5.7030 -2.7940 11.7636 19 6 6.4606 -1.8607 12.7101 20 6 7.0436 -2.6725 13.8684 21 1 6.2356 -3.1628 14.4113 22 8 7.7508 -1.8007 14.7527 23 6 8.0032 -3.7295 13.3182 24 6 7.2457 -4.6629 12.3718 25 6 3.5561 -4.7265 5.9948 26 6 3.0983 -4.0765 4.8711 27 6 3.0947 -0.6527 3.3228 28 6 2.6376 -0.0088 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7704 0.0321 32 1 1.5614 2.4678 -1.2085 33 1 1.1298 -2.6035 0.6434 34 1 1.9454 -3.7714 2.6489 35 1 4.2562 -0.9552 5.5382 36 1 5.0719 -2.1101 7.5469 37 1 5.0441 -5.2067 10.7863 38 1 6.5652 -5.5898 9.9449 39 1 5.2873 -2.2159 10.9383 40 1 4.8952 -3.2843 12.3069 41 1 5.7770 -1.1073 13.1017 42 1 7.2686 -1.3704 12.1671 43 1 7.2029 -1.1042 15.1396 44 1 8.4183 -4.3081 14.1434 45 1 8.8113 -3.2393 12.7752 46 1 6.4377 -5.1532 12.9148 47 1 7.9294 -5.4157 11.9795 48 1 3.3637 -5.7813 6.1248 49 1 2.5456 -4.6213 4.1200 50 1 3.6421 -0.1030 4.0742 51 1 2.8282 1.0458 2.0568 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13158368_16737258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:24:40 Heat of formation + Delta-G solvation = -129.375794 kcal Electronic energy + Delta-G solvation = -31502.331317 eV Core-core repulsion = 27104.148077 eV Total energy + Delta-G solvation = -4398.183240 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.69353 -41.00645 -40.16934 -39.51619 -37.76934 -37.51142 -36.54102 -34.18130 -32.73238 -32.08905 -31.91581 -31.68049 -30.93716 -27.51913 -26.49298 -24.77844 -24.62262 -23.88520 -22.84610 -22.56612 -22.20525 -21.49695 -20.94390 -19.23545 -18.63933 -18.24748 -18.02779 -17.66160 -17.45496 -16.89783 -16.51926 -16.48890 -16.09410 -15.71805 -15.56197 -15.50888 -15.35286 -15.22567 -15.02293 -14.89032 -14.54952 -14.40467 -14.33603 -14.11078 -13.93883 -13.71340 -13.60907 -13.31228 -13.24619 -13.14280 -12.78423 -12.66752 -12.57936 -12.21678 -12.07156 -12.03968 -11.92436 -11.75991 -11.70888 -11.57357 -11.43901 -11.17740 -10.84959 -10.76721 -10.47995 -10.16578 -10.07231 -9.20080 -5.09922 -0.83258 0.25236 0.28548 0.37179 1.22263 1.54218 1.56768 1.58642 1.92164 2.48136 2.89752 3.10401 3.29646 3.41183 3.46439 3.52433 3.55011 3.64216 3.66416 3.73097 3.78256 3.87948 3.93505 3.99739 4.08312 4.15360 4.17262 4.20345 4.22831 4.27305 4.31867 4.37973 4.40907 4.42053 4.50922 4.54073 4.58368 4.70927 4.78086 4.80365 4.86116 4.94261 4.96548 4.98539 5.02251 5.07415 5.07702 5.09600 5.17828 5.23616 5.27045 5.33291 5.39212 5.44386 5.54254 5.67243 5.80633 6.49700 6.67182 6.74250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.070 4.070 3 Si 0.686 3.314 4 C -0.112 4.112 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.052 4.052 8 C -0.007 4.007 9 C -0.125 4.125 10 C -0.056 4.056 11 C -0.128 4.128 12 C 0.509 3.491 13 O -0.504 6.504 14 O -0.350 6.350 15 C 0.072 3.928 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.112 4.112 19 C -0.152 4.152 20 C 0.102 3.898 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.049 4.049 26 C -0.123 4.123 27 C -0.098 4.098 28 C -0.114 4.114 29 H 0.380 0.620 30 H 0.114 0.886 31 H -0.257 1.257 32 H -0.254 1.254 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.379 0.621 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.133 0.867 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 3.636 1.516 4.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.588 3.412 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.052 4.052 8 C -0.007 4.007 9 C -0.143 4.143 10 C -0.074 4.074 11 C -0.129 4.129 12 C 0.354 3.646 13 O -0.393 6.393 14 O -0.267 6.267 15 C -0.001 4.001 16 C -0.107 4.107 17 H 0.105 0.895 18 C -0.150 4.150 19 C -0.190 4.190 20 C 0.044 3.956 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.067 4.067 26 C -0.141 4.141 27 C -0.116 4.116 28 C -0.131 4.131 29 H 0.227 0.773 30 H 0.132 0.868 31 H -0.182 1.182 32 H -0.179 1.179 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.226 0.774 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.150 0.850 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.225 3.169 0.455 3.209 hybrid contribution -0.385 -0.462 0.039 0.603 sum -0.610 2.707 0.494 2.818 Atomic orbital electron populations 1.86518 1.16948 1.81701 1.49259 1.25085 0.85355 1.10181 0.97467 0.94778 0.81100 0.77968 0.87366 1.20474 0.99020 0.95035 0.96731 1.20986 0.98585 0.93739 0.97555 1.21342 0.97083 1.00199 0.93417 1.18814 0.99053 0.93520 0.93854 1.19069 0.95327 0.93262 0.93035 1.21234 0.98848 1.00606 0.93625 1.21404 0.96044 0.92879 0.97089 1.19172 1.04937 0.94578 0.94214 1.21132 0.75286 0.85323 0.82845 1.90862 1.54700 1.16154 1.77630 1.86507 1.66049 1.43354 1.30816 1.23190 0.99095 0.94181 0.83683 1.21275 0.98342 0.96135 0.94980 0.89546 1.21533 0.97589 0.96770 0.99067 1.22276 1.00520 0.98581 0.97576 1.21847 0.93831 0.90499 0.89462 0.92707 1.86519 1.41032 1.46198 1.63747 1.21437 0.98137 0.96157 0.99119 1.21480 1.00256 0.97735 0.95357 1.21224 0.93299 1.00634 0.91561 1.21201 1.01125 0.93703 0.98079 1.21228 0.99271 0.93536 0.97586 1.20946 0.98739 0.99373 0.94092 0.77315 0.86834 1.18191 1.17886 0.85245 0.85198 0.84589 0.84066 0.90845 0.90781 0.90707 0.91692 0.91484 0.90901 0.77386 0.90772 0.90905 0.91155 0.90639 0.84113 0.84532 0.84972 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.13 12.83 -35.23 -0.45 -0.32 16 2 C -0.07 0.06 2.80 36.01 0.10 0.16 16 3 Si 0.69 -1.08 29.79 -169.99 -5.06 -6.14 16 4 C -0.11 0.07 5.36 -104.55 -0.56 -0.49 16 5 C -0.09 0.02 9.67 -39.63 -0.38 -0.36 16 6 C -0.10 0.05 9.43 -39.24 -0.37 -0.32 16 7 C -0.05 0.02 5.88 -104.90 -0.62 -0.60 16 8 C -0.01 0.00 5.88 -104.82 -0.62 -0.61 16 9 C -0.13 0.12 9.41 -39.32 -0.37 -0.24 16 10 C -0.06 0.02 9.60 -39.23 -0.38 -0.36 16 11 C -0.13 -0.17 5.88 -104.94 -0.62 -0.79 16 12 C 0.51 1.43 7.89 34.55 0.27 1.70 16 13 O -0.50 -2.73 16.12 -19.26 -0.31 -3.04 16 14 O -0.35 -0.46 9.00 -40.58 -0.37 -0.83 16 15 C 0.07 0.01 4.85 37.16 0.18 0.19 16 16 C -0.09 0.12 2.44 -90.62 -0.22 -0.10 16 17 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 18 C -0.11 0.16 5.10 -26.73 -0.14 0.03 16 19 C -0.15 0.22 5.54 -26.73 -0.15 0.07 16 20 C 0.10 -0.06 3.47 -26.74 -0.09 -0.15 16 21 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 22 O -0.57 -0.44 13.32 -35.23 -0.47 -0.91 16 23 C -0.11 0.06 5.57 -26.73 -0.15 -0.09 16 24 C -0.11 0.19 5.20 -26.73 -0.14 0.05 16 25 C -0.05 -0.04 9.58 -39.23 -0.38 -0.42 16 26 C -0.12 0.04 9.41 -39.32 -0.37 -0.33 16 27 C -0.10 0.12 9.43 -39.23 -0.37 -0.25 16 28 C -0.11 0.16 8.65 -39.63 -0.34 -0.18 16 29 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 30 H 0.11 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H -0.26 -0.21 7.11 56.52 0.40 0.20 16 32 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 33 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 34 H 0.13 -0.28 6.19 -52.49 -0.33 -0.60 16 35 H 0.14 -0.44 6.19 -52.48 -0.32 -0.76 16 36 H 0.14 -0.26 7.60 -52.49 -0.40 -0.66 16 37 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 -0.08 7.82 -51.93 -0.41 -0.49 16 40 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 41 H 0.07 -0.14 8.14 -51.92 -0.42 -0.56 16 42 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 43 H 0.38 -1.16 9.08 45.56 0.41 -0.75 16 44 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 46 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 47 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 48 H 0.14 0.07 7.64 -52.49 -0.40 -0.33 16 49 H 0.14 -0.29 6.19 -52.49 -0.32 -0.62 16 50 H 0.13 -0.44 6.19 -52.49 -0.33 -0.77 16 51 H 0.13 -0.44 4.89 -52.49 -0.26 -0.69 16 LS Contribution 412.36 15.07 6.21 6.21 Total: 0.00 -8.37 412.36 -12.78 -21.15 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -6.64 Total: -13.02 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -5.70 Total: -3.11 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -1.60 Total: -5.10 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.06 Total: -6.14 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -8.37 -12.78 -21.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158368_16737258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.222 kcal (2) G-P(sol) polarization free energy of solvation -8.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds