Wall clock time and date at job start Sat Mar 6 2021 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47073 * 2 1 4 4 C 1.50699 * 109.47078 * 120.00000 * 2 1 3 5 5 C 1.38337 * 119.87371 * 65.00319 * 4 2 1 6 6 C 1.38001 * 120.12821 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87156 * 0.02562 * 6 5 4 8 8 C 1.48269 * 120.12732 * 180.02562 * 7 6 5 9 9 C 1.39515 * 119.97177 * 179.97438 * 8 7 6 10 10 C 1.37639 * 120.03249 * 179.97438 * 9 8 7 11 11 C 1.39761 * 119.97072 * 0.02562 * 10 9 8 12 12 C 1.47592 * 120.03305 * 179.97438 * 11 10 9 13 13 O 1.21487 * 120.00099 * 179.97438 * 12 11 10 14 14 O 1.34733 * 119.99811 * 359.97288 * 12 11 10 15 15 C 1.45204 * 116.99968 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47274 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.47531 * 305.00329 * 16 15 14 18 18 C 1.52998 * 109.47090 * 65.00109 * 16 15 14 19 19 C 1.53006 * 109.47066 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47319 * 300.00226 * 19 18 16 21 21 H 1.09000 * 109.47163 * 299.99993 * 20 19 18 22 22 O 1.42900 * 109.47528 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47236 * 59.99878 * 20 19 18 24 24 C 1.52998 * 109.47243 * 299.99868 * 23 20 19 25 25 C 1.39763 * 119.94192 * 359.97331 * 11 10 9 26 26 C 1.37654 * 119.96742 * 0.02562 * 25 11 10 27 27 C 1.39413 * 119.74840 * 0.26755 * 7 6 5 28 28 C 1.38009 * 119.86595 * 359.45700 * 27 7 6 29 29 H 0.96703 * 114.00218 * 299.99859 * 1 2 3 30 30 H 1.08997 * 109.46943 * 240.00034 * 2 1 3 31 31 H 1.48504 * 110.00236 * 178.68195 * 3 2 1 32 32 H 1.48498 * 109.99924 * 299.99913 * 3 2 1 33 33 H 1.07996 * 119.93111 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.05950 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.98404 * 359.71648 * 9 8 7 36 36 H 1.08002 * 120.01839 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47407 * 300.00318 * 15 14 12 38 38 H 1.09006 * 109.46703 * 60.00447 * 15 14 12 39 39 H 1.08999 * 109.47088 * 300.00057 * 18 16 15 40 40 H 1.09000 * 109.46951 * 60.00241 * 18 16 15 41 41 H 1.09008 * 109.46928 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46998 * 60.00321 * 19 18 16 43 43 H 0.96696 * 114.00054 * 59.99064 * 22 20 19 44 44 H 1.08999 * 109.47088 * 180.02562 * 23 20 19 45 45 H 1.08994 * 109.47302 * 60.00236 * 23 20 19 46 46 H 1.09000 * 109.47242 * 299.99938 * 24 23 20 47 47 H 1.09003 * 109.47106 * 179.97438 * 24 23 20 48 48 H 1.08002 * 120.02222 * 179.97438 * 25 11 10 49 49 H 1.08000 * 119.98347 * 180.02562 * 26 25 11 50 50 H 1.08000 * 120.07018 * 179.70274 * 27 7 6 51 51 H 1.07999 * 119.93666 * 180.27297 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6831 -2.0612 1.3958 6 6 2.1401 -2.7169 2.5208 7 6 2.8528 -2.0152 3.4919 8 6 3.3470 -2.7141 4.7025 9 6 4.0604 -2.0088 5.6721 10 6 4.5193 -2.6563 6.7966 11 6 4.2709 -4.0211 6.9668 12 6 4.7628 -4.7168 8.1719 13 8 4.5461 -5.9031 8.3194 14 8 5.4523 -4.0363 9.1083 15 6 5.9048 -4.7847 10.2674 16 6 6.6626 -3.8510 11.2134 17 1 7.4704 -3.3607 10.6701 18 6 5.7030 -2.7940 11.7636 19 6 6.4606 -1.8607 12.7101 20 6 7.0436 -2.6725 13.8684 21 1 6.2356 -3.1628 14.4113 22 8 7.7508 -1.8007 14.7527 23 6 8.0032 -3.7295 13.3182 24 6 7.2457 -4.6629 12.3718 25 6 3.5561 -4.7265 5.9948 26 6 3.0983 -4.0765 4.8711 27 6 3.0947 -0.6527 3.3228 28 6 2.6376 -0.0088 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7704 0.0321 32 1 1.5614 2.4678 -1.2085 33 1 1.1298 -2.6035 0.6434 34 1 1.9454 -3.7714 2.6489 35 1 4.2562 -0.9552 5.5382 36 1 5.0719 -2.1101 7.5469 37 1 5.0441 -5.2067 10.7863 38 1 6.5652 -5.5898 9.9449 39 1 5.2873 -2.2159 10.9383 40 1 4.8952 -3.2843 12.3069 41 1 5.7770 -1.1073 13.1017 42 1 7.2686 -1.3704 12.1671 43 1 7.2029 -1.1042 15.1396 44 1 8.4183 -4.3081 14.1434 45 1 8.8113 -3.2393 12.7752 46 1 6.4377 -5.1532 12.9148 47 1 7.9294 -5.4157 11.9795 48 1 3.3637 -5.7813 6.1248 49 1 2.5456 -4.6213 4.1200 50 1 3.6421 -0.1030 4.0742 51 1 2.8282 1.0458 2.0568 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158368_16737258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:24:38 Heat of formation + Delta-G solvation = -124.635017 kcal Electronic energy + Delta-G solvation = -31502.125742 eV Core-core repulsion = 27104.148077 eV Total energy + Delta-G solvation = -4397.977665 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.171 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.79121 -40.94719 -40.11478 -39.48075 -37.83817 -37.49881 -36.56335 -34.13618 -32.64735 -32.06197 -31.82093 -31.60262 -30.88890 -27.50125 -26.45444 -24.69824 -24.60688 -23.79226 -22.79218 -22.50543 -22.18076 -21.48469 -20.86546 -19.24454 -18.62895 -18.21803 -18.06949 -17.64624 -17.56467 -16.82099 -16.47162 -16.42746 -16.03773 -15.69642 -15.50102 -15.41754 -15.30412 -15.19563 -14.90307 -14.85143 -14.50468 -14.36514 -14.29381 -14.07838 -13.94175 -13.68929 -13.57949 -13.22900 -13.19983 -13.11062 -12.75992 -12.58453 -12.55401 -12.13793 -12.10919 -11.98664 -11.93613 -11.73227 -11.64322 -11.60410 -11.50414 -11.09617 -10.81517 -10.70383 -10.41349 -10.10961 -9.96047 -9.14221 -5.00238 -0.81843 0.30932 0.38363 0.41212 1.31111 1.45741 1.49272 1.64146 1.97444 2.52337 2.96315 3.20417 3.35483 3.49521 3.56080 3.62039 3.63535 3.73218 3.74339 3.79598 3.85881 4.01169 4.03800 4.04620 4.15168 4.23091 4.24261 4.27086 4.34206 4.35034 4.37227 4.47016 4.47804 4.48513 4.56074 4.62832 4.65235 4.81111 4.88062 4.90215 4.95237 5.03092 5.06666 5.07632 5.09611 5.15328 5.17712 5.18294 5.21793 5.28118 5.32507 5.39725 5.45101 5.49668 5.62635 5.73729 5.92156 6.58473 6.76183 6.86975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.077 4.077 3 Si 0.777 3.223 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.064 4.064 8 C -0.009 4.009 9 C -0.124 4.124 10 C -0.053 4.053 11 C -0.147 4.147 12 C 0.509 3.491 13 O -0.540 6.540 14 O -0.346 6.346 15 C 0.070 3.930 16 C -0.081 4.081 17 H 0.085 0.915 18 C -0.110 4.110 19 C -0.145 4.145 20 C 0.100 3.900 21 H 0.060 0.940 22 O -0.590 6.590 23 C -0.112 4.112 24 C -0.106 4.106 25 C -0.060 4.060 26 C -0.127 4.127 27 C -0.099 4.099 28 C -0.118 4.118 29 H 0.395 0.605 30 H 0.105 0.895 31 H -0.284 1.284 32 H -0.303 1.303 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.393 0.607 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.135 0.865 49 H 0.150 0.850 50 H 0.156 0.844 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 5.036 1.884 5.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.187 4.187 3 Si 0.684 3.316 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.009 4.009 9 C -0.141 4.141 10 C -0.071 4.071 11 C -0.148 4.148 12 C 0.356 3.644 13 O -0.431 6.431 14 O -0.263 6.263 15 C -0.004 4.004 16 C -0.100 4.100 17 H 0.103 0.897 18 C -0.147 4.147 19 C -0.183 4.183 20 C 0.041 3.959 21 H 0.078 0.922 22 O -0.399 6.399 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.078 4.078 26 C -0.145 4.145 27 C -0.117 4.117 28 C -0.135 4.135 29 H 0.245 0.755 30 H 0.122 0.878 31 H -0.211 1.211 32 H -0.231 1.231 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.243 0.757 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.153 0.847 49 H 0.168 0.832 50 H 0.173 0.827 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.285 4.575 0.857 4.663 hybrid contribution -0.387 -0.865 -0.130 0.956 sum -0.672 3.710 0.727 3.840 Atomic orbital electron populations 1.86478 1.17227 1.82194 1.50523 1.25218 0.85314 1.10931 0.97217 0.93758 0.77849 0.75164 0.84867 1.20556 0.99233 0.95025 0.96955 1.21081 0.99173 0.94180 0.97860 1.21511 0.97024 1.00851 0.93366 1.18920 0.99487 0.94128 0.93832 1.19223 0.95154 0.93255 0.93281 1.21526 0.97942 1.01787 0.92848 1.21576 0.95741 0.92103 0.97646 1.19253 1.06071 0.95518 0.93964 1.21469 0.74683 0.84991 0.83217 1.90837 1.56263 1.17595 1.78446 1.86507 1.65625 1.43229 1.30895 1.23296 0.99096 0.94497 0.83497 1.21218 0.98125 0.95918 0.94694 0.89667 1.21514 0.97529 0.96643 0.99037 1.22204 1.00384 0.98571 0.97112 1.21914 0.93799 0.90500 0.89683 0.92186 1.86480 1.42271 1.46986 1.64149 1.21443 0.98149 0.96327 0.99032 1.21446 1.00380 0.97550 0.95004 1.21271 0.93844 1.00589 0.92113 1.21370 1.01084 0.94086 0.97965 1.21532 0.98841 0.93266 0.98025 1.21174 0.98247 1.00326 0.93765 0.75451 0.87789 1.21128 1.23143 0.85421 0.84275 0.82006 0.82622 0.91019 0.91091 0.90783 0.91439 0.90486 0.91602 0.75713 0.91313 0.91663 0.90652 0.90194 0.84714 0.83208 0.82659 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.34 12.83 -148.98 -1.91 -1.57 16 2 C -0.08 0.13 2.80 71.24 0.20 0.33 16 3 Si 0.78 -2.74 29.79 68.60 2.04 -0.70 16 4 C -0.12 0.20 5.36 -19.82 -0.11 0.09 16 5 C -0.10 0.04 9.67 22.24 0.21 0.26 16 6 C -0.11 0.14 9.43 22.49 0.21 0.35 16 7 C -0.06 0.10 5.88 -20.05 -0.12 -0.01 16 8 C -0.01 0.01 5.88 -19.99 -0.12 -0.11 16 9 C -0.12 0.43 9.41 22.44 0.21 0.64 16 10 C -0.05 0.08 9.60 22.50 0.22 0.29 16 11 C -0.15 -0.48 5.88 -20.07 -0.12 -0.59 16 12 C 0.51 3.41 7.89 70.29 0.55 3.97 16 13 O -0.54 -6.79 16.12 19.88 0.32 -6.47 16 14 O -0.35 -1.07 9.00 -56.43 -0.51 -1.58 16 15 C 0.07 0.05 4.85 71.98 0.35 0.40 16 16 C -0.08 0.21 2.44 -10.79 -0.03 0.18 16 17 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 18 C -0.11 0.36 5.10 30.60 0.16 0.52 16 19 C -0.14 0.48 5.54 30.59 0.17 0.65 16 20 C 0.10 -0.12 3.47 30.59 0.11 -0.02 16 21 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 22 O -0.59 -0.87 13.32 -148.98 -1.98 -2.85 16 23 C -0.11 0.10 5.57 30.59 0.17 0.27 16 24 C -0.11 0.35 5.20 30.59 0.16 0.51 16 25 C -0.06 -0.15 9.58 22.50 0.22 0.06 16 26 C -0.13 0.05 9.41 22.44 0.21 0.27 16 27 C -0.10 0.43 9.43 22.50 0.21 0.64 16 28 C -0.12 0.50 8.65 22.24 0.19 0.69 16 29 H 0.40 -3.47 8.70 -74.06 -0.64 -4.11 16 30 H 0.10 -0.01 7.96 -2.39 -0.02 -0.03 16 31 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 32 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 33 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 34 H 0.14 -0.58 6.19 -2.91 -0.02 -0.60 16 35 H 0.16 -1.50 6.19 -2.91 -0.02 -1.51 16 36 H 0.16 -0.77 7.60 -2.91 -0.02 -0.79 16 37 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 39 H 0.07 -0.21 7.82 -2.39 -0.02 -0.23 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 43 H 0.39 -2.51 9.08 -74.06 -0.67 -3.18 16 44 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.08 -0.33 8.14 -2.39 -0.02 -0.34 16 48 H 0.13 0.40 7.64 -2.91 -0.02 0.38 16 49 H 0.15 -0.62 6.19 -2.91 -0.02 -0.63 16 50 H 0.16 -1.49 6.19 -2.91 -0.02 -1.51 16 51 H 0.15 -1.32 4.89 -2.91 -0.01 -1.33 16 Total: 0.00 -20.15 412.36 0.72 -19.43 By element: Atomic # 1 Polarization: -15.34 SS G_CDS: -0.31 Total: -15.65 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 3.06 Total: 9.38 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -4.08 Total: -12.47 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.04 Total: -0.70 kcal Total: -20.15 0.72 -19.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158368_16737258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.203 kcal (2) G-P(sol) polarization free energy of solvation -20.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds