Wall clock time and date at job start Sat Mar 6 2021 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99945 * 2 1 4 4 C 1.52990 * 112.90945 * 294.08008 * 3 2 1 5 5 F 1.39900 * 109.47381 * 195.61980 * 4 3 2 6 6 F 1.39903 * 109.47435 * 315.61975 * 4 3 2 7 7 F 1.39905 * 109.47491 * 75.62282 * 4 3 2 8 8 C 1.53776 * 113.61252 * 162.82387 * 3 2 1 9 9 C 1.53773 * 87.08476 * 270.88647 * 8 3 2 10 10 H 1.09005 * 113.69483 * 220.00922 * 9 8 3 11 11 C 1.53005 * 113.61321 * 89.11944 * 9 8 3 12 12 O 1.45195 * 109.47296 * 87.50552 * 11 9 8 13 13 C 1.34735 * 117.00117 * 180.02562 * 12 11 9 14 14 O 1.21499 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.47589 * 120.00467 * 179.97438 * 13 12 11 16 16 C 1.39768 * 120.02723 * 359.72405 * 15 13 12 17 17 C 1.37649 * 119.96938 * 179.74071 * 16 15 13 18 18 C 1.39509 * 120.03000 * 0.55379 * 17 16 15 19 19 C 1.48270 * 119.97166 * 179.71771 * 18 17 16 20 20 C 1.39411 * 120.12740 * 179.70755 * 19 18 17 21 21 C 1.38001 * 119.86700 * 179.74572 * 20 19 18 22 22 C 1.38332 * 120.12831 * 0.50632 * 21 20 19 23 23 C 1.50702 * 119.87079 * 179.74159 * 22 21 20 24 24 O 1.42894 * 109.47219 * 245.02323 * 23 22 21 25 25 Si 1.86303 * 109.47111 * 5.02609 * 23 22 21 26 26 C 1.38334 * 120.25866 * 359.76890 * 22 21 20 27 27 C 1.38003 * 120.12596 * 359.97438 * 26 22 21 28 28 C 1.39512 * 120.05955 * 359.70173 * 18 17 16 29 29 C 1.37646 * 120.02999 * 0.02562 * 28 18 17 30 30 C 1.53775 * 87.08305 * 334.56743 * 9 8 3 31 31 H 1.09003 * 109.47086 * 182.99385 * 1 2 3 32 32 H 1.08997 * 109.47090 * 302.99410 * 1 2 3 33 33 H 1.09002 * 109.47136 * 62.99287 * 1 2 3 34 34 H 1.09002 * 113.61628 * 25.43749 * 8 3 2 35 35 H 1.09005 * 113.61246 * 156.33737 * 8 3 2 36 36 H 1.09007 * 109.46815 * 207.50558 * 11 9 8 37 37 H 1.08997 * 109.46863 * 327.49645 * 11 9 8 38 38 H 1.08003 * 120.01285 * 0.02562 * 16 15 13 39 39 H 1.08004 * 119.98148 * 180.27544 * 17 16 15 40 40 H 1.07994 * 120.06383 * 359.97438 * 20 19 18 41 41 H 1.07996 * 119.93285 * 180.22887 * 21 20 19 42 42 H 1.09004 * 109.46605 * 125.02161 * 23 22 21 43 43 H 0.96700 * 114.00004 * 179.97438 * 24 23 22 44 44 H 1.48501 * 109.99877 * 299.99930 * 25 23 22 45 45 H 1.48497 * 110.00081 * 61.31454 * 25 23 22 46 46 H 1.07998 * 119.93538 * 179.97438 * 26 22 21 47 47 H 1.08005 * 120.06166 * 179.97438 * 27 26 22 48 48 H 1.08004 * 119.98954 * 180.02562 * 28 18 17 49 49 H 1.08009 * 120.01649 * 180.02562 * 29 28 18 50 50 H 1.09002 * 113.62027 * 270.88325 * 30 9 8 51 51 H 1.08999 * 113.61545 * 139.97882 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7272 2.0835 -1.2866 5 9 2.5973 3.1756 -1.3723 6 9 1.9204 1.2457 -2.3903 7 9 0.4050 2.5406 -1.2739 8 6 3.4905 1.3207 0.4161 9 6 3.0004 1.4808 1.8648 10 1 3.5975 2.1761 2.4549 11 6 2.7582 0.1503 2.5804 12 8 3.9936 -0.3002 3.1960 13 6 3.9515 -1.4658 3.8704 14 8 2.9107 -2.0886 3.9426 15 6 5.1695 -1.9862 4.5216 16 6 6.3684 -1.2732 4.4340 17 6 7.5024 -1.7570 5.0463 18 6 7.4581 -2.9642 5.7441 19 6 8.6818 -3.4872 6.3978 20 6 8.6398 -4.6901 7.1012 21 6 9.7833 -5.1746 7.7031 22 6 10.9670 -4.4638 7.6184 23 6 12.2108 -4.9954 8.2828 24 8 12.6070 -4.1086 9.3309 25 14 11.8625 -6.6815 8.9944 26 6 11.0133 -3.2667 6.9266 27 6 9.8775 -2.7751 6.3162 28 6 6.2633 -3.6796 5.8278 29 6 5.1265 -3.1953 5.2212 30 6 1.7235 2.1074 1.2805 31 1 -0.3633 -1.0263 0.0537 32 1 -0.3633 0.5596 0.8619 33 1 -0.3633 0.4667 -0.9156 34 1 4.0058 0.3782 0.2311 35 1 4.0401 2.1850 0.0430 36 1 1.9971 0.2845 3.3491 37 1 2.4191 -0.5935 1.8594 38 1 6.4040 -0.3408 3.8902 39 1 8.4279 -1.2040 4.9825 40 1 7.7152 -5.2436 7.1717 41 1 9.7528 -6.1082 8.2451 42 1 13.0120 -5.0698 7.5474 43 1 13.4026 -4.3890 9.8037 44 1 10.7719 -6.5937 9.9984 45 1 11.4801 -7.6213 7.9101 46 1 11.9402 -2.7159 6.8642 47 1 9.9147 -1.8402 5.7768 48 1 6.2302 -4.6138 6.3687 49 1 4.2015 -3.7491 5.2865 50 1 1.7898 3.1868 1.1438 51 1 0.8121 1.8000 1.7934 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158368_17321610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:52:53 Heat of formation + Delta-G solvation = -211.442810 kcal Electronic energy + Delta-G solvation = -39645.274700 eV Core-core repulsion = 33835.170840 eV Total energy + Delta-G solvation = -5810.103860 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.142 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -51.27377 -48.80365 -48.74724 -41.95628 -41.32556 -40.86887 -39.53246 -37.84269 -37.50701 -36.91850 -34.28863 -32.75133 -31.75570 -31.38405 -30.52937 -28.28967 -27.72512 -26.88328 -26.76370 -24.80866 -24.65375 -23.38747 -22.76404 -22.50930 -21.52678 -20.69464 -19.84088 -19.56717 -19.29787 -19.18085 -18.45824 -18.37551 -17.86883 -17.59107 -17.19168 -16.94061 -16.82591 -16.52828 -16.03422 -15.82319 -15.69249 -15.67693 -15.61908 -15.48229 -15.28218 -15.15770 -15.07801 -14.98662 -14.90321 -14.83148 -14.79358 -14.47653 -14.30639 -14.19674 -14.03866 -13.83776 -13.68586 -13.40279 -13.29179 -13.17451 -12.93310 -12.79419 -12.59112 -12.40391 -12.29333 -12.07640 -11.92358 -11.80091 -11.76289 -11.72556 -11.59136 -10.89906 -10.82747 -10.28372 -10.15589 -10.09983 -9.22485 -4.95899 -0.88372 0.22914 0.26204 0.32094 1.28983 1.40914 1.42693 1.51119 1.62636 1.95313 2.06222 2.42736 2.54216 2.60521 2.86089 2.86634 3.20021 3.27607 3.31904 3.41160 3.43328 3.52453 3.60609 3.73897 3.78253 3.82315 3.88193 3.99110 4.15046 4.19092 4.19435 4.20685 4.21023 4.24869 4.33853 4.41915 4.43681 4.49188 4.52680 4.58947 4.60730 4.66814 4.74510 4.78605 4.80915 4.81463 4.93346 4.97029 5.02797 5.09490 5.17576 5.22930 5.32758 5.37236 5.52488 5.67861 5.68083 5.79402 6.56396 6.89823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.030 3.970 4 C 0.434 3.566 5 F -0.174 7.174 6 F -0.189 7.189 7 F -0.185 7.185 8 C -0.112 4.112 9 C -0.091 4.091 10 H 0.126 0.874 11 C 0.076 3.924 12 O -0.345 6.345 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.144 4.144 16 C -0.050 4.050 17 C -0.123 4.123 18 C -0.011 4.011 19 C -0.063 4.063 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.086 4.086 23 C -0.078 4.078 24 O -0.563 6.563 25 Si 0.768 3.232 26 C -0.097 4.097 27 C -0.101 4.101 28 C -0.128 4.128 29 C -0.058 4.058 30 C -0.135 4.135 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.404 0.596 44 H -0.298 1.298 45 H -0.290 1.290 46 H 0.146 0.854 47 H 0.157 0.843 48 H 0.148 0.852 49 H 0.137 0.863 50 H 0.130 0.870 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 1.490 2.953 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.012 4.012 4 C 0.380 3.620 5 F -0.155 7.155 6 F -0.170 7.170 7 F -0.166 7.166 8 C -0.148 4.148 9 C -0.109 4.109 10 H 0.144 0.856 11 C 0.002 3.998 12 O -0.261 6.261 13 C 0.358 3.642 14 O -0.429 6.429 15 C -0.145 4.145 16 C -0.068 4.068 17 C -0.140 4.140 18 C -0.011 4.011 19 C -0.063 4.063 20 C -0.124 4.124 21 C -0.161 4.161 22 C -0.086 4.086 23 C -0.188 4.188 24 O -0.373 6.373 25 Si 0.675 3.325 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.146 4.146 29 C -0.077 4.077 30 C -0.172 4.172 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.255 0.745 44 H -0.226 1.226 45 H -0.218 1.218 46 H 0.164 0.836 47 H 0.174 0.826 48 H 0.166 0.834 49 H 0.155 0.845 50 H 0.148 0.852 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.036 0.874 2.819 5.837 hybrid contribution -1.196 0.236 -0.878 1.502 sum 3.840 1.109 1.941 4.444 Atomic orbital electron populations 1.23258 0.78802 1.05109 1.01821 1.88083 1.22051 1.22700 1.93856 1.24267 1.00898 0.86218 0.89837 1.21471 0.74150 0.78730 0.87692 1.93174 1.69526 1.56190 1.96636 1.93189 1.94798 1.71527 1.57496 1.93182 1.36736 1.89856 1.96856 1.23358 0.90343 1.05970 0.95174 1.22043 0.98177 0.95454 0.95237 0.85555 1.23118 0.83527 0.96281 0.96848 1.86470 1.39475 1.37185 1.62976 1.21394 0.88532 0.78733 0.75556 1.90844 1.33503 1.59067 1.59444 1.19255 0.92165 0.98345 1.04766 1.21610 0.90265 0.99391 0.95562 1.21512 0.99828 0.95380 0.97313 1.19181 0.92263 0.94501 0.95201 1.18921 0.93186 0.95317 0.98835 1.21399 0.98681 0.95755 0.96566 1.20982 0.93493 1.00108 1.01481 1.19859 0.94195 0.96252 0.98300 1.24787 0.96676 1.03811 0.93520 1.86438 1.51053 1.50776 1.49027 0.94430 0.85214 0.73924 0.78916 1.21215 0.99596 0.94756 0.95936 1.21651 0.91252 1.00384 0.98530 1.21345 0.91316 1.01221 1.00706 1.21263 0.99334 0.93558 0.93512 1.23657 0.99706 1.01731 0.92078 0.87376 0.91216 0.93380 0.89159 0.85030 0.90488 0.90344 0.82146 0.82156 0.83904 0.86567 0.88472 0.74474 1.22646 1.21778 0.83631 0.82573 0.83407 0.84528 0.85204 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 113.37 1.17 1.17 16 2 O -0.35 -0.85 8.37 -148.98 -1.25 -2.10 16 3 C 0.03 -0.02 0.84 -10.27 -0.01 -0.03 16 4 C 0.43 1.07 2.52 71.98 0.18 1.25 16 5 F -0.17 -0.29 15.80 44.97 0.71 0.42 16 6 F -0.19 -1.29 17.11 44.97 0.77 -0.52 16 7 F -0.18 -0.58 15.34 44.97 0.69 0.11 16 8 C -0.11 0.37 6.89 31.12 0.21 0.58 16 9 C -0.09 0.43 4.21 -10.27 -0.04 0.39 16 10 H 0.13 -1.00 8.14 -2.38 -0.02 -1.02 16 11 C 0.08 0.05 5.06 71.98 0.36 0.42 16 12 O -0.34 -1.05 9.46 -56.45 -0.53 -1.59 16 13 C 0.51 3.64 7.89 70.29 0.55 4.19 16 14 O -0.54 -6.97 16.12 19.84 0.32 -6.65 16 15 C -0.14 -0.58 5.88 -20.07 -0.12 -0.70 16 16 C -0.05 0.03 9.60 22.50 0.22 0.25 16 17 C -0.12 0.21 9.41 22.44 0.21 0.42 16 18 C -0.01 -0.01 5.88 -19.99 -0.12 -0.13 16 19 C -0.06 -0.13 5.88 -20.05 -0.12 -0.25 16 20 C -0.11 -0.33 9.43 22.50 0.21 -0.12 16 21 C -0.14 -0.68 8.65 22.24 0.19 -0.49 16 22 C -0.09 -0.30 5.39 -19.82 -0.11 -0.40 16 23 C -0.08 0.12 2.79 71.24 0.20 0.32 16 24 O -0.56 0.77 12.81 -148.98 -1.91 -1.13 16 25 Si 0.77 -1.70 29.84 68.60 2.05 0.35 16 26 C -0.10 -0.13 9.67 22.24 0.21 0.08 16 27 C -0.10 0.00 9.43 22.49 0.21 0.21 16 28 C -0.13 -0.19 9.41 22.44 0.21 0.02 16 29 C -0.06 -0.22 9.58 22.50 0.22 0.00 16 30 C -0.13 0.75 6.52 31.12 0.20 0.95 16 31 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.07 -0.30 6.60 -2.39 -0.02 -0.31 16 33 H 0.05 0.00 6.56 -2.39 -0.02 -0.01 16 34 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 35 H 0.13 -0.82 7.03 -2.38 -0.02 -0.83 16 36 H 0.08 0.04 8.14 -2.38 -0.02 0.02 16 37 H 0.08 0.31 6.11 -2.39 -0.01 0.30 16 38 H 0.16 -0.76 7.60 -2.91 -0.02 -0.78 16 39 H 0.16 -1.14 6.19 -2.91 -0.02 -1.16 16 40 H 0.14 -0.09 6.19 -2.91 -0.02 -0.11 16 41 H 0.12 0.52 4.85 -2.91 -0.01 0.51 16 42 H 0.10 -0.57 7.96 -2.38 -0.02 -0.59 16 43 H 0.40 -4.77 8.74 -74.06 -0.65 -5.42 16 44 H -0.30 -1.66 7.04 99.48 0.70 -0.96 16 45 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 46 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 47 H 0.16 -0.89 6.19 -2.91 -0.02 -0.91 16 48 H 0.15 -0.29 6.19 -2.91 -0.02 -0.31 16 49 H 0.14 0.53 7.64 -2.91 -0.02 0.51 16 50 H 0.13 -1.09 8.03 -2.39 -0.02 -1.11 16 51 H 0.10 -0.68 6.64 -2.39 -0.02 -0.69 16 Total: 0.00 -22.29 427.34 5.32 -16.97 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: 0.41 Total: -13.98 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.06 Total: 8.12 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -3.37 Total: -11.47 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 2.17 Total: 0.01 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.05 Total: 0.35 kcal Total: -22.29 5.32 -16.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158368_17321610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.472 kcal (2) G-P(sol) polarization free energy of solvation -22.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds