Wall clock time and date at job start Sat Mar 6 2021 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86289 * 1 3 3 C 1.86302 * 109.47510 * 2 1 4 4 C 1.86307 * 109.47051 * 239.99873 * 2 1 3 5 5 C 1.86308 * 109.47047 * 120.00178 * 2 1 3 6 6 O 1.45201 * 109.46988 * 59.99757 * 5 2 1 7 7 C 1.34733 * 117.00014 * 74.99978 * 6 5 2 8 8 O 1.21494 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.47596 * 120.00268 * 179.97438 * 7 6 5 10 10 C 1.39760 * 120.03373 * 180.02562 * 9 7 6 11 11 C 1.37643 * 119.96960 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.03209 * 0.02562 * 11 10 9 13 13 C 1.48276 * 119.97132 * 179.97438 * 12 11 10 14 14 C 1.39402 * 120.12362 * 359.72423 * 13 12 11 15 15 C 1.38006 * 119.86718 * 179.78723 * 14 13 12 16 16 C 1.38337 * 120.12456 * 0.48758 * 15 14 13 17 17 C 1.50707 * 119.86992 * 179.72100 * 16 15 14 18 18 O 1.42900 * 109.46947 * 245.02648 * 17 16 15 19 19 Si 1.86303 * 109.46728 * 5.02219 * 17 16 15 20 20 H 1.48500 * 109.47296 * 60.00159 * 19 17 16 21 21 H 1.48507 * 109.46707 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47105 * 299.99840 * 19 17 16 23 23 C 1.38333 * 120.25795 * 359.74305 * 16 15 14 24 24 C 1.37995 * 120.13006 * 0.02562 * 23 16 15 25 25 C 1.39519 * 120.06152 * 0.27570 * 12 11 10 26 26 C 1.37651 * 120.02320 * 359.44165 * 25 12 11 27 27 H 1.09004 * 109.47029 * 300.00173 * 1 2 3 28 28 H 1.09005 * 109.47412 * 59.99464 * 1 2 3 29 29 H 1.09003 * 109.47539 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47097 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46872 * 299.99953 * 3 2 1 32 32 H 1.09000 * 109.46627 * 59.99889 * 3 2 1 33 33 H 1.08993 * 109.46930 * 299.99919 * 4 2 1 34 34 H 1.08999 * 109.46952 * 60.00561 * 4 2 1 35 35 H 1.08998 * 109.46832 * 180.02562 * 4 2 1 36 36 H 1.08995 * 109.46948 * 299.99469 * 5 2 1 37 37 H 1.09005 * 109.46913 * 179.97438 * 5 2 1 38 38 H 1.08004 * 120.01195 * 0.04720 * 10 9 7 39 39 H 1.07999 * 119.98130 * 179.97438 * 11 10 9 40 40 H 1.07991 * 120.07045 * 0.02591 * 14 13 12 41 41 H 1.08000 * 119.93830 * 180.21055 * 15 14 13 42 42 H 1.08997 * 109.46789 * 125.02131 * 17 16 15 43 43 H 0.96696 * 114.00579 * 59.99657 * 18 17 16 44 44 H 1.08001 * 119.93413 * 179.97438 * 23 16 15 45 45 H 1.08001 * 120.06188 * 179.97438 * 24 23 16 46 46 H 1.07991 * 119.99015 * 179.70737 * 25 12 11 47 47 H 1.08000 * 120.01435 * 180.28337 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4839 -0.8783 1.5212 6 8 1.9998 -2.2473 1.5211 7 6 2.5962 -3.1069 0.6722 8 8 3.4964 -2.7234 -0.0479 9 6 2.1567 -4.5149 0.6179 10 6 2.7753 -5.4073 -0.2620 11 6 2.3640 -6.7199 -0.3120 12 6 1.3300 -7.1595 0.5148 13 6 0.8877 -8.5737 0.4595 14 6 1.4994 -9.4641 -0.4215 15 6 1.0865 -10.7802 -0.4655 16 6 0.0609 -11.2139 0.3554 17 6 -0.3897 -12.6509 0.2981 18 8 -1.7343 -12.7097 -0.1819 19 14 0.7227 -13.6050 -0.8523 20 1 2.1201 -13.5439 -0.3535 21 1 0.2783 -15.0209 -0.9091 22 1 0.6557 -13.0107 -2.2115 23 6 -0.5530 -10.3336 1.2282 24 6 -0.1454 -9.0165 1.2843 25 6 0.7073 -6.2683 1.3893 26 6 1.1206 -4.9565 1.4454 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8787 -1.5209 36 1 2.1206 -0.3645 2.4111 37 1 3.5739 -0.8787 1.5209 38 1 3.5758 -5.0671 -0.9023 39 1 2.8416 -7.4096 -0.9922 40 1 2.2974 -9.1257 -1.0656 41 1 1.5619 -11.4718 -1.1452 42 1 -0.3405 -13.0871 1.2958 43 1 -1.8528 -12.3381 -1.0667 44 1 -1.3534 -10.6777 1.8664 45 1 -0.6257 -8.3300 1.9658 46 1 -0.0962 -6.6088 2.0254 47 1 0.6416 -4.2678 2.1256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13158368_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:01:45 Heat of formation + Delta-G solvation = -99.062461 kcal Electronic energy + Delta-G solvation = -26480.875190 eV Core-core repulsion = 22717.320902 eV Total energy + Delta-G solvation = -3763.554288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62269 -40.92820 -39.55335 -37.64529 -37.23230 -34.15385 -32.71476 -31.70502 -31.13063 -29.69467 -28.49342 -28.34658 -28.22308 -26.81551 -24.75981 -24.50789 -22.72172 -22.47240 -21.43269 -19.27906 -18.56032 -18.14876 -17.64498 -17.31779 -17.05667 -16.43669 -16.10637 -15.85647 -15.63538 -15.18353 -15.06342 -14.94538 -14.66674 -14.57618 -14.32699 -14.16225 -14.09687 -13.99979 -13.81057 -13.61296 -13.40694 -13.33382 -13.25316 -13.05679 -12.97043 -12.79306 -12.65435 -12.46421 -12.24448 -12.06628 -11.97630 -11.57923 -11.44836 -10.91616 -10.81211 -10.76359 -10.46303 -10.38093 -10.13453 -10.04682 -9.16803 -0.79684 0.28071 0.30659 0.40201 1.08687 1.37057 1.42623 1.46152 1.52298 1.64772 1.84445 1.85972 2.03587 2.50544 2.54101 2.92769 3.32935 3.43281 3.52854 3.63879 3.76335 3.81912 3.89338 3.98435 4.18257 4.19388 4.21710 4.24612 4.47282 4.55491 4.61544 4.63778 4.66166 4.68308 4.73271 4.75340 4.80428 4.82994 4.89992 4.95644 4.96871 5.03610 5.12532 5.21026 5.29036 5.40605 5.41419 5.45660 5.50558 5.56869 5.70576 5.74381 5.83083 6.47429 6.82213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.000 3.000 3 C -0.446 4.446 4 C -0.436 4.436 5 C -0.238 4.238 6 O -0.333 6.333 7 C 0.492 3.508 8 O -0.489 6.489 9 C -0.126 4.126 10 C -0.050 4.050 11 C -0.124 4.124 12 C -0.008 4.008 13 C -0.052 4.052 14 C -0.098 4.098 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.082 4.082 18 O -0.537 6.537 19 Si 0.948 3.052 20 H -0.250 1.250 21 H -0.253 1.253 22 H -0.251 1.251 23 C -0.088 4.088 24 C -0.103 4.103 25 C -0.125 4.125 26 C -0.059 4.059 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.377 0.623 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.136 0.864 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -0.192 0.491 1.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.554 4.554 4 C -0.544 4.544 5 C -0.357 4.357 6 O -0.249 6.249 7 C 0.337 3.663 8 O -0.379 6.379 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.141 4.141 12 C -0.009 4.009 13 C -0.052 4.052 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.113 4.113 17 C -0.193 4.193 18 O -0.342 6.342 19 Si 0.771 3.229 20 H -0.173 1.173 21 H -0.177 1.177 22 H -0.175 1.175 23 C -0.106 4.106 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.077 4.077 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.224 0.776 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.154 0.846 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.511 -0.806 0.361 1.020 hybrid contribution 0.044 0.676 -0.084 0.683 sum -0.467 -0.130 0.277 0.558 Atomic orbital electron populations 1.26064 1.20070 1.04689 1.04575 0.79695 0.67662 0.67076 0.66029 1.26040 1.06501 1.18071 1.04835 1.26241 1.07028 1.07289 1.13885 1.28366 1.05319 0.83831 1.18152 1.86462 1.59016 1.21249 1.58138 1.21172 0.80497 0.86780 0.77829 1.90844 1.28636 1.78059 1.40320 1.19184 1.00913 0.90477 1.02125 1.21217 0.97819 0.92168 0.95624 1.21191 0.97400 0.95669 0.99882 1.19063 0.94629 0.92181 0.94985 1.18816 0.96917 0.91998 0.97431 1.21205 0.99566 0.92772 0.98076 1.21014 0.97477 0.96282 0.99388 1.20438 0.96840 0.96740 0.97291 1.25008 0.90712 0.96256 1.07302 1.86527 1.25565 1.84578 1.37566 0.85691 0.78505 0.79853 0.78820 1.17327 1.17710 1.17523 1.20982 0.99152 0.92622 0.97837 1.21346 0.96142 0.96069 0.98501 1.21239 1.00736 0.92876 0.99390 1.21436 0.94022 0.95924 0.96324 0.91071 0.90980 0.91077 0.90967 0.90650 0.91054 0.91555 0.91907 0.90422 0.87180 0.90082 0.84063 0.84580 0.85114 0.85843 0.86298 0.77595 0.85021 0.85134 0.84638 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.34 8.65 101.05 0.87 1.21 16 2 Si 1.00 -1.26 12.12 -169.99 -2.06 -3.32 16 3 C -0.45 0.56 8.65 101.05 0.87 1.43 16 4 C -0.44 -0.54 7.10 101.05 0.72 0.18 16 5 C -0.24 0.04 5.40 101.05 0.55 0.58 16 6 O -0.33 -0.54 9.15 -40.58 -0.37 -0.91 16 7 C 0.49 1.30 6.67 34.55 0.23 1.53 16 8 O -0.49 -2.05 12.04 -19.26 -0.23 -2.28 16 9 C -0.13 -0.20 5.88 -104.94 -0.62 -0.81 16 10 C -0.05 -0.04 9.58 -39.23 -0.38 -0.42 16 11 C -0.12 0.01 9.41 -39.33 -0.37 -0.35 16 12 C -0.01 0.00 5.88 -104.82 -0.62 -0.62 16 13 C -0.05 0.00 5.88 -104.90 -0.62 -0.62 16 14 C -0.10 0.04 9.43 -39.23 -0.37 -0.33 16 15 C -0.12 0.05 8.65 -39.63 -0.34 -0.29 16 16 C -0.11 0.04 5.36 -104.55 -0.56 -0.52 16 17 C -0.08 0.09 2.80 36.01 0.10 0.19 16 18 O -0.54 0.15 12.83 -35.23 -0.45 -0.30 16 19 Si 0.95 -1.05 25.13 -169.99 -4.27 -5.32 16 20 H -0.25 0.11 7.11 56.52 0.40 0.52 16 21 H -0.25 -0.13 7.11 56.52 0.40 0.28 16 22 H -0.25 0.25 7.04 56.52 0.40 0.65 16 23 C -0.09 0.03 9.67 -39.64 -0.38 -0.35 16 24 C -0.10 0.05 9.43 -39.24 -0.37 -0.32 16 25 C -0.12 0.06 9.41 -39.32 -0.37 -0.31 16 26 C -0.06 -0.01 9.60 -39.23 -0.38 -0.38 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 0.16 6.28 -51.93 -0.33 -0.16 16 34 H 0.06 0.04 7.96 -51.93 -0.41 -0.38 16 35 H 0.08 0.18 7.42 -51.93 -0.39 -0.21 16 36 H 0.11 -0.23 7.96 -51.93 -0.41 -0.65 16 37 H 0.08 0.03 7.52 -51.93 -0.39 -0.36 16 38 H 0.14 0.06 7.64 -52.48 -0.40 -0.34 16 39 H 0.14 -0.29 6.19 -52.49 -0.32 -0.61 16 40 H 0.13 -0.29 6.19 -52.49 -0.33 -0.62 16 41 H 0.12 -0.20 4.84 -52.49 -0.25 -0.46 16 42 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 43 H 0.38 -1.27 8.70 45.56 0.40 -0.88 16 44 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 45 H 0.13 -0.30 6.19 -52.49 -0.33 -0.63 16 46 H 0.14 -0.34 6.19 -52.49 -0.32 -0.66 16 47 H 0.14 -0.18 7.60 -52.49 -0.40 -0.58 16 LS Contribution 384.43 15.07 5.79 5.79 Total: 0.00 -6.17 384.43 -9.62 -15.79 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: -6.00 Total: -9.25 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.02 Total: -0.21 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -1.06 Total: -3.49 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: -6.33 Total: -8.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -6.17 -9.62 -15.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158368_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.272 kcal (2) G-P(sol) polarization free energy of solvation -6.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds