Wall clock time and date at job start Sat Mar 6 2021 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86289 * 1 3 3 C 1.86302 * 109.47510 * 2 1 4 4 C 1.86307 * 109.47051 * 239.99873 * 2 1 3 5 5 C 1.86308 * 109.47047 * 120.00178 * 2 1 3 6 6 O 1.45201 * 109.46988 * 59.99757 * 5 2 1 7 7 C 1.34733 * 117.00014 * 74.99978 * 6 5 2 8 8 O 1.21494 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.47596 * 120.00268 * 179.97438 * 7 6 5 10 10 C 1.39760 * 120.03373 * 180.02562 * 9 7 6 11 11 C 1.37643 * 119.96960 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.03209 * 0.02562 * 11 10 9 13 13 C 1.48276 * 119.97132 * 179.97438 * 12 11 10 14 14 C 1.39402 * 120.12362 * 359.72423 * 13 12 11 15 15 C 1.38006 * 119.86718 * 179.78723 * 14 13 12 16 16 C 1.38337 * 120.12456 * 0.48758 * 15 14 13 17 17 C 1.50707 * 119.86992 * 179.72100 * 16 15 14 18 18 O 1.42900 * 109.46947 * 245.02648 * 17 16 15 19 19 Si 1.86303 * 109.46728 * 5.02219 * 17 16 15 20 20 H 1.48500 * 109.47296 * 60.00159 * 19 17 16 21 21 H 1.48507 * 109.46707 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47105 * 299.99840 * 19 17 16 23 23 C 1.38333 * 120.25795 * 359.74305 * 16 15 14 24 24 C 1.37995 * 120.13006 * 0.02562 * 23 16 15 25 25 C 1.39519 * 120.06152 * 0.27570 * 12 11 10 26 26 C 1.37651 * 120.02320 * 359.44165 * 25 12 11 27 27 H 1.09004 * 109.47029 * 300.00173 * 1 2 3 28 28 H 1.09005 * 109.47412 * 59.99464 * 1 2 3 29 29 H 1.09003 * 109.47539 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47097 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46872 * 299.99953 * 3 2 1 32 32 H 1.09000 * 109.46627 * 59.99889 * 3 2 1 33 33 H 1.08993 * 109.46930 * 299.99919 * 4 2 1 34 34 H 1.08999 * 109.46952 * 60.00561 * 4 2 1 35 35 H 1.08998 * 109.46832 * 180.02562 * 4 2 1 36 36 H 1.08995 * 109.46948 * 299.99469 * 5 2 1 37 37 H 1.09005 * 109.46913 * 179.97438 * 5 2 1 38 38 H 1.08004 * 120.01195 * 0.04720 * 10 9 7 39 39 H 1.07999 * 119.98130 * 179.97438 * 11 10 9 40 40 H 1.07991 * 120.07045 * 0.02591 * 14 13 12 41 41 H 1.08000 * 119.93830 * 180.21055 * 15 14 13 42 42 H 1.08997 * 109.46789 * 125.02131 * 17 16 15 43 43 H 0.96696 * 114.00579 * 59.99657 * 18 17 16 44 44 H 1.08001 * 119.93413 * 179.97438 * 23 16 15 45 45 H 1.08001 * 120.06188 * 179.97438 * 24 23 16 46 46 H 1.07991 * 119.99015 * 179.70737 * 25 12 11 47 47 H 1.08000 * 120.01435 * 180.28337 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4839 -0.8783 1.5212 6 8 1.9998 -2.2473 1.5211 7 6 2.5962 -3.1069 0.6722 8 8 3.4964 -2.7234 -0.0479 9 6 2.1567 -4.5149 0.6179 10 6 2.7753 -5.4073 -0.2620 11 6 2.3640 -6.7199 -0.3120 12 6 1.3300 -7.1595 0.5148 13 6 0.8877 -8.5737 0.4595 14 6 1.4994 -9.4641 -0.4215 15 6 1.0865 -10.7802 -0.4655 16 6 0.0609 -11.2139 0.3554 17 6 -0.3897 -12.6509 0.2981 18 8 -1.7343 -12.7097 -0.1819 19 14 0.7227 -13.6050 -0.8523 20 1 2.1201 -13.5439 -0.3535 21 1 0.2783 -15.0209 -0.9091 22 1 0.6557 -13.0107 -2.2115 23 6 -0.5530 -10.3336 1.2282 24 6 -0.1454 -9.0165 1.2843 25 6 0.7073 -6.2683 1.3893 26 6 1.1206 -4.9565 1.4454 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8787 -1.5209 36 1 2.1206 -0.3645 2.4111 37 1 3.5739 -0.8787 1.5209 38 1 3.5758 -5.0671 -0.9023 39 1 2.8416 -7.4096 -0.9922 40 1 2.2974 -9.1257 -1.0656 41 1 1.5619 -11.4718 -1.1452 42 1 -0.3405 -13.0871 1.2958 43 1 -1.8528 -12.3381 -1.0667 44 1 -1.3534 -10.6777 1.8664 45 1 -0.6257 -8.3300 1.9658 46 1 -0.0962 -6.6088 2.0254 47 1 0.6416 -4.2678 2.1256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13158368_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:01:44 Heat of formation + Delta-G solvation = -89.001106 kcal Electronic energy + Delta-G solvation = -26480.438897 eV Core-core repulsion = 22717.320902 eV Total energy + Delta-G solvation = -3763.117995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70575 -40.90094 -39.52858 -37.60317 -37.35220 -34.12618 -32.65890 -31.65062 -31.10576 -29.65473 -28.44027 -28.36834 -28.19602 -26.76678 -24.70213 -24.50174 -22.67657 -22.46593 -21.44072 -19.29423 -18.53941 -18.20581 -17.63816 -17.43696 -16.99452 -16.37260 -16.03910 -15.82660 -15.57697 -15.14782 -14.99514 -14.90727 -14.68079 -14.54508 -14.31301 -14.08853 -14.04760 -13.95645 -13.80431 -13.58008 -13.39695 -13.30400 -13.22570 -13.06339 -12.96904 -12.75340 -12.61227 -12.51738 -12.18870 -12.02554 -11.92027 -11.59953 -11.50533 -10.85984 -10.80626 -10.77636 -10.40268 -10.37035 -10.11258 -9.97011 -9.13644 -0.80161 0.30718 0.36944 0.41978 1.17701 1.42114 1.44865 1.51661 1.53017 1.62824 1.88667 1.91313 2.07896 2.52534 2.56684 2.95995 3.38830 3.54678 3.61482 3.70345 3.81025 3.85225 3.97804 4.06081 4.23391 4.24165 4.26433 4.33350 4.57305 4.62585 4.67347 4.69172 4.73997 4.77355 4.80327 4.81468 4.82045 4.86605 4.88448 4.89585 5.05474 5.06521 5.17757 5.21836 5.29126 5.40225 5.48936 5.52054 5.60139 5.61930 5.62803 5.73787 5.91624 6.68657 6.69413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.060 2.940 3 C -0.451 4.451 4 C -0.456 4.456 5 C -0.257 4.257 6 O -0.334 6.334 7 C 0.490 3.510 8 O -0.514 6.514 9 C -0.145 4.145 10 C -0.061 4.061 11 C -0.126 4.126 12 C -0.012 4.012 13 C -0.063 4.063 14 C -0.105 4.105 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.079 4.079 18 O -0.552 6.552 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.251 1.251 23 C -0.097 4.097 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.059 4.059 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.389 0.611 44 H 0.139 0.861 45 H 0.147 0.853 46 H 0.157 0.843 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 0.132 1.224 2.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.252 2.748 3 C -0.559 4.559 4 C -0.561 4.561 5 C -0.374 4.374 6 O -0.250 6.250 7 C 0.336 3.664 8 O -0.405 6.405 9 C -0.146 4.146 10 C -0.079 4.079 11 C -0.144 4.144 12 C -0.012 4.012 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.152 4.152 16 C -0.117 4.117 17 C -0.190 4.190 18 O -0.359 6.359 19 Si 0.804 3.196 20 H -0.182 1.182 21 H -0.203 1.203 22 H -0.175 1.175 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.077 4.077 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.238 0.762 44 H 0.157 0.843 45 H 0.165 0.835 46 H 0.175 0.825 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.382 -0.491 1.075 1.818 hybrid contribution 0.311 0.524 -0.331 0.694 sum -1.071 0.034 0.744 1.305 Atomic orbital electron populations 1.26141 1.20330 1.04455 1.05194 0.78788 0.66703 0.66085 0.63245 1.26073 1.06437 1.17927 1.05495 1.26544 1.06114 1.07008 1.16458 1.28719 1.05158 0.83263 1.20271 1.86450 1.58890 1.21940 1.57702 1.21445 0.80159 0.87340 0.77479 1.90827 1.29807 1.78564 1.41325 1.19311 1.01999 0.90097 1.03226 1.21285 0.98050 0.92708 0.95825 1.21383 0.97419 0.95456 1.00113 1.19215 0.94571 0.92458 0.94970 1.18913 0.97448 0.91958 0.97999 1.21443 0.99870 0.92817 0.98167 1.21177 0.97707 0.96564 0.99724 1.20561 0.96831 0.97034 0.97257 1.25010 0.90368 0.95928 1.07658 1.86494 1.25922 1.84802 1.38661 0.85264 0.77649 0.78059 0.78653 1.18242 1.20311 1.17522 1.21141 0.99493 0.92795 0.98088 1.21571 0.95895 0.96363 0.98497 1.21498 1.00999 0.92458 0.99326 1.21598 0.93527 0.96498 0.96109 0.90050 0.90766 0.91748 0.91180 0.90459 0.89924 0.93160 0.91640 0.91974 0.84871 0.90802 0.84446 0.82941 0.83752 0.85006 0.85672 0.76211 0.84311 0.83502 0.82520 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.91 8.65 113.37 0.98 1.89 16 2 Si 1.06 -2.50 12.12 68.60 0.83 -1.67 16 3 C -0.45 1.42 8.65 113.37 0.98 2.40 16 4 C -0.46 -1.93 7.10 113.37 0.80 -1.13 16 5 C -0.26 0.04 5.40 113.37 0.61 0.65 16 6 O -0.33 -1.29 9.15 -56.43 -0.52 -1.80 16 7 C 0.49 3.32 6.67 70.29 0.47 3.79 16 8 O -0.51 -5.43 12.04 19.86 0.24 -5.19 16 9 C -0.15 -0.62 5.88 -20.07 -0.12 -0.73 16 10 C -0.06 -0.19 9.58 22.50 0.22 0.03 16 11 C -0.13 -0.02 9.41 22.44 0.21 0.19 16 12 C -0.01 0.00 5.88 -19.99 -0.12 -0.12 16 13 C -0.06 0.02 5.88 -20.05 -0.12 -0.10 16 14 C -0.11 0.12 9.43 22.50 0.21 0.33 16 15 C -0.13 0.16 8.65 22.24 0.19 0.35 16 16 C -0.12 0.13 5.36 -19.82 -0.11 0.02 16 17 C -0.08 0.19 2.80 71.24 0.20 0.39 16 18 O -0.55 0.49 12.83 -148.98 -1.91 -1.42 16 19 Si 0.98 -2.08 25.13 68.60 1.72 -0.36 16 20 H -0.26 0.22 7.11 99.48 0.71 0.92 16 21 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 22 H -0.25 0.58 7.04 99.48 0.70 1.28 16 23 C -0.10 0.13 9.67 22.23 0.21 0.34 16 24 C -0.11 0.19 9.43 22.49 0.21 0.40 16 25 C -0.13 0.18 9.41 22.44 0.21 0.39 16 26 C -0.06 -0.02 9.60 22.50 0.22 0.19 16 27 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 29 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 30 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 31 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 32 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 33 H 0.05 0.37 6.28 -2.39 -0.02 0.35 16 34 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 35 H 0.06 0.44 7.42 -2.39 -0.02 0.42 16 36 H 0.13 -0.70 7.96 -2.39 -0.02 -0.71 16 37 H 0.07 0.11 7.52 -2.38 -0.02 0.09 16 38 H 0.14 0.41 7.64 -2.91 -0.02 0.39 16 39 H 0.15 -0.64 6.19 -2.91 -0.02 -0.66 16 40 H 0.14 -0.71 6.19 -2.92 -0.02 -0.73 16 41 H 0.13 -0.48 4.84 -2.91 -0.01 -0.49 16 42 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 43 H 0.39 -2.73 8.70 -74.06 -0.64 -3.38 16 44 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 45 H 0.15 -0.88 6.19 -2.91 -0.02 -0.90 16 46 H 0.16 -1.00 6.19 -2.92 -0.02 -1.02 16 47 H 0.15 -0.44 7.60 -2.91 -0.02 -0.46 16 Total: 0.00 -14.82 384.43 6.73 -8.09 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: 1.09 Total: -6.95 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 5.27 Total: 9.30 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -2.19 Total: -8.42 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.56 Total: -2.03 kcal Total: -14.82 6.73 -8.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158368_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.911 kcal (2) G-P(sol) polarization free energy of solvation -14.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds