Wall clock time and date at job start Sat Mar 6 2021 04:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.46955 * 2 1 4 4 C 1.50696 * 109.46869 * 240.00552 * 2 1 3 5 5 C 1.38905 * 119.67775 * 120.00264 * 4 2 1 6 6 C 1.36465 * 120.61713 * 179.72201 * 5 4 2 7 7 C 1.40082 * 119.82960 * 359.97438 * 6 5 4 8 8 C 1.41558 * 133.36420 * 179.97438 * 7 6 5 9 9 C 1.35948 * 107.71845 * 180.02562 * 8 7 6 10 10 C 1.46900 * 125.43454 * 179.97438 * 9 8 7 11 11 O 1.21572 * 119.99909 * 0.02562 * 10 9 8 12 12 O 1.34838 * 120.00174 * 180.02562 * 10 9 8 13 13 C 1.45201 * 117.00322 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47203 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.85313 * 316.19881 * 14 13 12 16 16 C 1.53779 * 113.61311 * 87.50670 * 14 13 12 17 17 C 1.53781 * 87.08272 * 139.97991 * 16 14 13 18 18 H 1.09000 * 113.61431 * 89.10972 * 17 16 14 19 19 O 1.42893 * 113.61386 * 220.01800 * 17 16 14 20 20 C 1.53780 * 113.61452 * 185.00461 * 14 13 12 21 21 N 1.38193 * 109.13060 * 0.02562 * 9 8 7 22 22 C 1.37474 * 108.78125 * 359.97438 * 21 9 8 23 23 C 1.37713 * 119.66956 * 299.72034 * 4 2 1 24 24 H 0.96700 * 113.99927 * 59.99550 * 1 2 3 25 25 H 1.08994 * 109.47380 * 120.00150 * 2 1 3 26 26 H 1.48503 * 110.00317 * 298.68036 * 3 2 1 27 27 H 1.48502 * 110.00068 * 60.00638 * 3 2 1 28 28 H 1.07995 * 119.68631 * 359.73793 * 5 4 2 29 29 H 1.08003 * 120.08168 * 180.02562 * 6 5 4 30 30 H 1.08000 * 126.13586 * 0.06670 * 8 7 6 31 31 H 1.08992 * 109.46950 * 300.00601 * 13 12 10 32 32 H 1.09002 * 109.46699 * 60.00024 * 13 12 10 33 33 H 1.09000 * 113.61175 * 254.52586 * 16 14 13 34 34 H 1.09001 * 113.61595 * 25.42751 * 16 14 13 35 35 H 0.96703 * 114.00204 * 277.49667 * 19 17 16 36 36 H 1.09006 * 113.61091 * 334.56476 * 20 14 13 37 37 H 1.08992 * 113.61797 * 105.47217 * 20 14 13 38 38 H 0.96999 * 125.61289 * 180.02562 * 21 9 8 39 39 H 1.08001 * 120.09484 * 0.26139 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7295 -0.0287 -2.1404 6 6 3.1995 -0.6548 -3.2581 7 6 2.8761 -1.9975 -3.4927 8 6 3.1962 -2.9077 -4.5286 9 6 2.6016 -4.0944 -4.2349 10 6 2.6799 -5.3119 -5.0533 11 8 3.3179 -5.3086 -6.0882 12 8 2.0443 -6.4330 -4.6567 13 6 2.1649 -7.5979 -5.5150 14 6 1.3836 -8.7636 -4.9054 15 1 1.5405 -8.8627 -3.8313 16 6 -0.0971 -8.7959 -5.3191 17 6 0.0478 -10.3230 -5.4275 18 1 -0.1619 -10.8487 -4.4959 19 8 -0.6363 -10.8847 -6.5493 20 6 1.5465 -10.0843 -5.6761 21 7 1.9107 -3.9725 -3.0443 22 6 2.0667 -2.6912 -2.5713 23 6 1.5992 -2.0304 -1.4389 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5138 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5616 2.4678 1.2086 28 1 2.9807 1.0062 -1.9613 29 1 3.8198 -0.1168 -3.9597 30 1 3.8041 -2.6972 -5.3960 31 1 1.7621 -7.3660 -6.5008 32 1 3.2154 -7.8739 -5.6074 33 1 -0.7780 -8.4769 -4.5300 34 1 -0.2947 -8.3072 -6.2732 35 1 -1.5793 -11.0372 -6.3990 36 1 1.7982 -9.9478 -6.7279 37 1 2.1924 -10.8053 -5.1753 38 1 1.4003 -4.6755 -2.6128 39 1 0.9783 -2.5518 -0.7254 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13158384_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:12:10 Heat of formation + Delta-G solvation = -77.033213 kcal Electronic energy + Delta-G solvation = -23598.171073 eV Core-core repulsion = 19859.896804 eV Total energy + Delta-G solvation = -3738.274269 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.75315 -41.36064 -40.31054 -39.14247 -37.60206 -37.02137 -36.06913 -33.36274 -31.47789 -30.47129 -29.78236 -27.13434 -26.88802 -24.88193 -23.60958 -23.07331 -22.11583 -21.44718 -20.71699 -19.52973 -18.76399 -18.60529 -18.16304 -17.61603 -17.42174 -16.85068 -16.53792 -16.30507 -15.74353 -15.68360 -15.57948 -15.16461 -14.94270 -14.80254 -14.58435 -14.25685 -14.02264 -13.75312 -13.60669 -13.20549 -12.91614 -12.63688 -12.58948 -12.54668 -12.27088 -12.09025 -11.88486 -11.73518 -11.59956 -11.35440 -11.02920 -10.88158 -10.64046 -9.41270 -8.90613 -4.95235 -0.50344 0.47277 0.78355 1.25483 1.32811 1.60829 1.83288 1.97934 1.98593 2.70657 3.05346 3.26769 3.32616 3.37469 3.49809 3.56925 3.64769 3.75038 3.76790 3.94211 4.02985 4.10345 4.17244 4.20283 4.30361 4.38856 4.43431 4.50059 4.58403 4.62379 4.62606 4.80055 4.81439 4.89698 4.95523 5.13613 5.25313 5.29186 5.34823 5.46936 5.51056 5.91757 6.24171 6.37150 6.57087 6.59769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.076 4.076 3 Si 0.690 3.310 4 C -0.082 4.082 5 C -0.146 4.146 6 C -0.047 4.047 7 C -0.121 4.121 8 C -0.090 4.090 9 C 0.030 3.970 10 C 0.532 3.468 11 O -0.487 6.487 12 O -0.357 6.357 13 C 0.082 3.918 14 C -0.112 4.112 15 H 0.107 0.893 16 C -0.165 4.165 17 C 0.077 3.923 18 H 0.085 0.915 19 O -0.559 6.559 20 C -0.120 4.120 21 N -0.567 5.567 22 C 0.120 3.880 23 C -0.104 4.104 24 H 0.377 0.623 25 H 0.120 0.880 26 H -0.259 1.259 27 H -0.258 1.258 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.381 0.619 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.426 0.574 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -0.508 2.316 2.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.185 4.185 3 Si 0.591 3.409 4 C -0.085 4.085 5 C -0.164 4.164 6 C -0.066 4.066 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.078 4.078 10 C 0.376 3.624 11 O -0.374 6.374 12 O -0.275 6.275 13 C 0.008 3.992 14 C -0.130 4.130 15 H 0.125 0.875 16 C -0.203 4.203 17 C 0.018 3.982 18 H 0.103 0.897 19 O -0.365 6.365 20 C -0.157 4.157 21 N -0.171 5.171 22 C 0.009 3.991 23 C -0.125 4.125 24 H 0.225 0.775 25 H 0.137 0.863 26 H -0.184 1.184 27 H -0.183 1.183 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.180 0.820 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.265 0.735 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.724 -0.171 2.283 2.401 hybrid contribution -1.842 -0.721 -0.168 1.985 sum -1.118 -0.892 2.115 2.553 Atomic orbital electron populations 1.86601 1.17640 1.80017 1.49415 1.25071 0.84020 1.11208 0.98242 0.94842 0.91695 0.74158 0.80212 1.20014 0.98099 0.93664 0.96680 1.20495 1.00679 0.99990 0.95286 1.20377 0.97659 0.91846 0.96716 1.18172 1.03079 0.94973 0.96280 1.21001 1.01012 0.89854 0.99774 1.18998 1.04860 0.93845 0.90057 1.19903 0.76689 0.82288 0.83542 1.90947 1.39179 1.84042 1.23201 1.86526 1.68121 1.20559 1.52261 1.23159 1.01607 0.81503 0.92893 1.22384 0.96022 0.93264 1.01342 0.87515 1.23807 0.96073 0.97695 1.02703 1.23274 0.93278 0.92134 0.89554 0.89674 1.86531 1.26241 1.85045 1.38672 1.23073 0.95356 0.95368 1.01918 1.41912 1.44597 1.11056 1.19501 1.18349 0.99730 0.84510 0.96465 1.19889 1.02558 0.94094 0.95942 0.77544 0.86256 1.18373 1.18340 0.85170 0.84857 0.82045 0.90401 0.90343 0.90755 0.88965 0.77143 0.88596 0.89931 0.73464 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.33 12.76 -35.23 -0.45 -0.78 16 2 C -0.08 0.06 2.81 36.00 0.10 0.17 16 3 Si 0.69 -1.02 29.75 -169.99 -5.06 -6.08 16 4 C -0.08 0.03 5.39 -104.57 -0.56 -0.54 16 5 C -0.15 0.12 8.59 -39.97 -0.34 -0.23 16 6 C -0.05 0.01 10.06 -39.53 -0.40 -0.38 16 7 C -0.12 -0.15 6.16 -106.93 -0.66 -0.81 16 8 C -0.09 -0.13 10.53 -39.14 -0.41 -0.55 16 9 C 0.03 0.05 6.99 -82.31 -0.58 -0.52 16 10 C 0.53 1.38 7.94 34.24 0.27 1.65 16 11 O -0.49 -2.45 16.63 -19.32 -0.32 -2.77 16 12 O -0.36 -0.39 10.23 -40.87 -0.42 -0.81 16 13 C 0.08 0.00 5.31 37.16 0.20 0.20 16 14 C -0.11 0.17 4.02 -89.81 -0.36 -0.19 16 15 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 16 C -0.17 0.23 7.46 -25.92 -0.19 0.03 16 17 C 0.08 -0.09 5.21 -25.92 -0.14 -0.23 16 18 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 19 O -0.56 -0.16 13.67 -35.23 -0.48 -0.65 16 20 C -0.12 0.15 7.47 -25.92 -0.19 -0.05 16 21 N -0.57 -0.14 6.19 -7.37 -0.05 -0.19 16 22 C 0.12 0.12 7.25 -83.97 -0.61 -0.49 16 23 C -0.10 -0.03 9.62 -39.42 -0.38 -0.41 16 24 H 0.38 -0.77 8.70 45.56 0.40 -0.38 16 25 H 0.12 -0.19 7.96 -51.93 -0.41 -0.61 16 26 H -0.26 -0.12 7.10 56.52 0.40 0.28 16 27 H -0.26 -0.51 7.11 56.52 0.40 -0.10 16 28 H 0.13 -0.35 4.82 -52.49 -0.25 -0.60 16 29 H 0.13 -0.31 8.06 -52.48 -0.42 -0.74 16 30 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 31 H 0.08 0.03 7.84 -51.93 -0.41 -0.38 16 32 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 34 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 35 H 0.38 -1.41 9.12 45.56 0.42 -0.99 16 36 H 0.10 -0.04 8.10 -51.93 -0.42 -0.46 16 37 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 38 H 0.43 -0.80 8.96 -40.82 -0.37 -1.17 16 39 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 LS Contribution 336.55 15.07 5.07 5.07 Total: 0.00 -7.91 336.55 -9.99 -17.90 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: -4.04 Total: -9.36 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.25 Total: -2.34 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.05 Total: -0.19 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -1.67 Total: -5.01 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.06 Total: -6.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -7.91 -9.99 -17.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13158384_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.129 kcal (2) G-P(sol) polarization free energy of solvation -7.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds